FFCP PHASE1:Hg19::chr6:129204219..129204228,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:129204219..129204228,+ to FFCP PHASE1:Hg19::chr6:129204219..129204228,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3908 | |EntrezGene=3908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |HGNC=6482 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | |UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | ||
|association_with_transcript=-57bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | |||
|cluster_id=chr6:129204219..129204228,+ | |||
|description=CAGE_peak_6_at_LAMA2_5end | |||
|id=chr6:129204219..129204228,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.30e-23!180;CL:0000057!3.48e-21!75;CL:0002620!1.32e-12!23;CL:0000680!1.60e-10!57;CL:0000056!1.60e-10!57;CL:0000355!1.60e-10!57;CL:0000187!1.39e-09!54;CL:0000183!3.81e-09!59;CL:0000136!9.11e-09!15;CL:0000393!3.65e-08!60;CL:0000211!3.65e-08!60;CL:0002334!6.06e-08!12;CL:0000048!8.39e-08!430;CL:0002494!9.31e-08!16;CL:0000723!3.38e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002494;1.87e-10;16!CL:0002580;4.99e-10;3!CL:0000136;5.94e-10;13!CL:0002615;1.61e-09;3!CL:0002620;1.33e-08;23!CL:0002334;1.57e-08;12!CL:0000569;6.25e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.52e-14,76;CL:0000136,3.95e-11,15;CL:0002494,2.86e-10,16;CL:0002580,8.97e-10,3;CL:0002615,2.79e-09,3;CL:0002620,6.92e-09,23;CL:0000048,8.02e-09,427;CL:0000723,1.61e-08,433;CL:0000034,3.94e-08,441;CL:0002334,4.02e-08,12;CL:0000569,6.46e-07,4;CL:0000011,6.46e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000011;6.25e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!2.34e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.39e-13!83;UBERON:0002329!1.39e-13!83;UBERON:0003077!1.39e-13!83;UBERON:0003059!1.39e-13!83;UBERON:0007282!1.39e-13!83;UBERON:0009618!1.39e-13!83;UBERON:0007285!1.39e-13!83;UBERON:0004290!1.66e-13!70;UBERON:0000475!7.61e-12!365;UBERON:0002385!7.64e-12!63;UBERON:0001015!7.64e-12!63;UBERON:0000383!7.64e-12!63;UBERON:0000486!2.05e-11!82;UBERON:0001134!2.19e-11!61;UBERON:0002036!2.19e-11!61;UBERON:0003082!2.19e-11!61;UBERON:0003102!4.19e-11!95;UBERON:0002199!1.09e-10!45;UBERON:0002416!1.09e-10!45;UBERON:0002097!2.75e-10!40;UBERON:0007100!9.36e-08!27;UBERON:0000948!1.63e-07!24;UBERON:0005498!1.63e-07!24;UBERON:0004140!1.63e-07!24;UBERON:0009881!1.63e-07!24;UBERON:0004141!1.63e-07!24;UBERON:0003084!1.63e-07!24;UBERON:0007005!1.63e-07!24;UBERON:0004139!1.63e-07!24;UBERON:0004291!1.63e-07!24;UBERON:0004458!1.98e-07!49;UBERON:0004457!2.51e-07!12;UBERON:0000042!2.51e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.48e-12;6!UBERON:0002358;2.48e-12;6!UBERON:0003684;2.48e-12;6!UBERON:0001178;2.48e-12;6!UBERON:0000948;3.04e-11;22!UBERON:0007100;1.20e-09;25!UBERON:0004457;4.33e-08;9!UBERON:0000042;4.33e-08;9!UBERON:0000310;2.78e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000948,5.92e-12,24;UBERON:0005498,5.92e-12,24;UBERON:0004140,5.92e-12,24;UBERON:0009881,5.92e-12,24;UBERON:0004141,5.92e-12,24;UBERON:0003084,5.92e-12,24;UBERON:0007005,5.92e-12,24;UBERON:0004139,5.92e-12,24;UBERON:0004291,5.92e-12,24;UBERON:0003688,7.05e-12,6;UBERON:0002358,7.05e-12,6;UBERON:0003684,7.05e-12,6;UBERON:0001178,7.05e-12,6;UBERON:0007100,2.29e-10,27;UBERON:0002097,7.77e-08,41;UBERON:0000310,3.27e-07,10 | |||
|phase1_expression=1.45342703416445,1.2846031433459,1.40954404095971,1.0007329835313,2.23480547213644,1.74467704820074,0,0,0.783556884599516,0,0,0,0,0.123766352960047,0.994192127183747,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.383587685530591,0.361439152384566,0.50133791063589,0,0,0.486634870302636,0.189069634328136,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.759783069987479,3.17782033951725,4.58938593198102,0.354668382198357,0,0,0.49333509683432,1.24484414159907,1.21239604862719,1.14423332179421,0.908144565869588,0.576175924479999,0,0.312160076830321,0,0.448346041655403,0.352303495931295,0.323745888736263,0.280901613404497,0.408308342509787,0.245668634623536,0.619954687054593,1.18800285728205,0.741800787835671,0,0,0,0.125118519871964,0.554128230968366,0,0.30648779579902,0.45071417671979,0.226864366320042,1.79389635688862,0.640672166455702,1.27159140695737,1.20036438433761,0.412210116953756,1.54584324027377,1.30281799432113,1.85653965465393,0.584622030967192,1.7670364197088,2.11714766877288,0.969876340912871,2.4850671476163,0.906768884048762,0.339121184620975,0,0,0,0,0.132529768321485,0,0,0,0,1.56449532329816,1.92972281457866,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0.234817388471643,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0.517086863031111,0,0.845302752556,1.32969058292435,0,0,0,0,0.714889968290738,0.542621605391443,0,0.65147236858747,0.355391948742546,0,0.602878754119172,0,0,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0,0,1.57702415033935,1.40569697991256,1.20378439891088,0,0,0.664225598535437,0.184369168541703,0.781952530212746,0.391602314925481,0.343143423810856,0,0,0,0,0,0,3.72161711728165,2.14846762603287,1.12264037773229,2.43464383585832,1.02341449813341,0.64341568457443,0,0.308419387605311,0.710246901252508,0.410635780069046,1.03850885836724,0.697262270759755,0,0,0,0.803701137152247,0.364182336013434,1.57349297951309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.206082023295445,0,0,0,0,0,1.16004861950546,0.924291702687866,0.460511024178389,0.275673144969061,1.18162269355101,0.580066775656914,0.170453254832202,0.890320356467374,0,0,0,0,0,6.92587163027408,0.6970372701606,0.308033580176089,1.59691809095107,0,0.74129687641568,0,1.116475108079,0,0.38126038784765,0,0.855877976067841,1.90921948755562,0,0.899362287916574,1.37268514868027,0.706874414074119,0.202182481573316,3.17020642346017,0.842516912477962,0,0.487426979262569,0,0.9554993798559,1.69686518344455,1.13008116620243,1.10273068709225,0,0.876901770507525,0,1.31178950409327,0,0,0,0.430234056612155,0.0982490410131212,0,0.709522128141196,0.211107635297664,0.987884678879706,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0,0.597743964753209,0,0,0.102268682502155,0,0.622079175323615,0,0,0,0.789147245095469,0,1.11136990144637,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0.295547618953547,0,0,0,0.692552326534174,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0.19871461170299,0.189932387867636,0,0,0.640358984218058,0,0,0,0,0,0,0,0.543616824294456,0.523014231561666,0,0,0,0.273810757783986,0,0.429765441419957,0,0,1.14580212005842,0,0.399358000997982,0,0.446342914883745,1.2764859772478,2.16179930125442,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0.157611414598396,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,1.87426823963964,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0.544017803369474,0.2506898940227,1.22538230705385,0.655745261419609,0,0,0.122026264901963,0.1251909307065,0,0.443716206147409,0.248385611765534,0,0,0,0.570930667089935,0,0,0,0.149254802886874,0.701139929541673,0.554805861502613,0.757612021100357,0.50313580350515,0,1.60188047877847,1.05861646634267,0.932623203496683,1.33069634990671,0.955780602982214,1.34940933649081,0.621051827505038,2.90294345488599,0.53168342911599,1.04349012362347,0.751288044986092,0,0.813741466409323,1.27294061441792,0.107410557042488,0.464033759878494,1.59238355479446,0,0.686791410365586,1.6837474438296,0,0,0,0,0,0.231522474323834,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,1.31043939538565,0,0,0,0,0,0,0.552317850755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| ||
|short_description=p6@LAMA2 | |||
}} | }} |
Latest revision as of 16:02, 24 September 2015
Short description: | p6@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LAMA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -57bp_to_ENST00000354729, ENST00000358023, NM_000426, NM_001079823, uc003qbn.2, uc003qbo.2_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | F8WAH5A6NGS5P24043Q59H37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.52e-14 | 76 |
fat cell | 3.95e-11 | 15 |
cardiocyte | 2.86e-10 | 16 |
preadipocyte of the breast | 8.97e-10 | 3 |
adipocyte of omentum tissue | 2.79e-09 | 3 |
skin fibroblast | 6.92e-09 | 23 |
multi fate stem cell | 8.02e-09 | 427 |
somatic stem cell | 1.61e-08 | 433 |
stem cell | 3.94e-08 | 441 |
preadipocyte | 4.02e-08 | 12 |
cardiac mesenchymal cell | 6.46e-07 | 4 |
migratory trunk neural crest cell | 6.46e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
heart | 5.92e-12 | 24 |
primitive heart tube | 5.92e-12 | 24 |
primary heart field | 5.92e-12 | 24 |
anterior lateral plate mesoderm | 5.92e-12 | 24 |
heart tube | 5.92e-12 | 24 |
heart primordium | 5.92e-12 | 24 |
cardiac mesoderm | 5.92e-12 | 24 |
cardiogenic plate | 5.92e-12 | 24 |
heart rudiment | 5.92e-12 | 24 |
omentum | 7.05e-12 | 6 |
peritoneum | 7.05e-12 | 6 |
abdominal cavity | 7.05e-12 | 6 |
visceral peritoneum | 7.05e-12 | 6 |
primary circulatory organ | 2.29e-10 | 27 |
skin of body | 7.77e-08 | 41 |
breast | 3.27e-07 | 10 |