FFCP PHASE1:Hg19::chr17:42200997..42201033,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:42200997..42201033,-
|short_description=p1@HDAC5
|description=CAGE_peak_1_at_HDAC5_5end
|association_with_transcript=0bp_to_ENST00000225983,ENST0000033605...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10014 | |EntrezGene=10014 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14068 | |HGNC=14068 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQL6,Q5W9G6 | |UniProt=Q9UQL6,Q5W9G6 | ||
|association_with_transcript=0bp_to_ENST00000225983,ENST00000336057,ENST00000393622,NM_001015053,NM_005474,uc002ife.1,uc002iff.1,uc002ifh.2,uc010czp.1_5end | |||
|cluster_id=chr17:42200997..42201033,- | |||
|description=CAGE_peak_1_at_HDAC5_5end | |||
|id=chr17:42200997..42201033,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.60e-33!115;UBERON:0001049!1.18e-19!57;UBERON:0005068!1.18e-19!57;UBERON:0006241!1.18e-19!57;UBERON:0007135!1.18e-19!57;UBERON:0000955!1.33e-16!69;UBERON:0006238!1.33e-16!69;UBERON:0002616!1.92e-16!59;UBERON:0000073!2.50e-16!94;UBERON:0001016!2.50e-16!94;UBERON:0001017!1.01e-15!82;UBERON:0003080!1.59e-15!42;UBERON:0005743!2.08e-15!86;UBERON:0002780!4.78e-15!41;UBERON:0001890!4.78e-15!41;UBERON:0006240!4.78e-15!41;UBERON:0002346!6.59e-14!90;UBERON:0003075!7.43e-13!86;UBERON:0007284!7.43e-13!86;UBERON:0001893!1.06e-12!34;UBERON:0002020!1.39e-12!34;UBERON:0003528!1.39e-12!34;UBERON:0002791!3.79e-12!33;UBERON:0002619!5.39e-12!22;UBERON:0001869!7.38e-12!32;UBERON:0001950!2.29e-11!20;UBERON:0003056!4.14e-10!61;UBERON:0000956!2.56e-09!25;UBERON:0000203!2.56e-09!25;UBERON:0000924!8.58e-09!173;UBERON:0006601!8.58e-09!173;UBERON:0000153!3.14e-08!129;UBERON:0007811!3.14e-08!129;UBERON:0000033!3.47e-08!123;UBERON:0004121!4.96e-08!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;5.49e-12;22!UBERON:0001950;2.30e-11;20!UBERON:0002780;2.37e-11;41!UBERON:0001890;2.37e-11;41!UBERON:0000073;5.68e-11;53!UBERON:0002616;5.68e-11;53!UBERON:0001893;5.80e-11;34!UBERON:0001869;1.16e-10;32!UBERON:0003528;1.31e-10;34!UBERON:0002020;1.31e-10;34!UBERON:0002791;1.68e-10;32!UBERON:0000956;2.40e-09;25!UBERON:0000203;2.40e-09;25!UBERON:0007023;1.42e-08;114!UBERON:0000955;9.40e-08;68!UBERON:0001017;2.75e-07;75!UBERON:0001016;3.00e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.90e-32,114;UBERON:0001049,3.62e-19,56;UBERON:0005068,3.62e-19,56;UBERON:0006241,3.62e-19,56;UBERON:0007135,3.62e-19,56;UBERON:0000073,1.07e-18,53;UBERON:0002616,1.07e-18,53;UBERON:0001016,3.41e-16,89;UBERON:0000955,3.75e-16,68;UBERON:0006238,3.75e-16,68;UBERON:0001017,2.69e-15,81;UBERON:0002780,4.78e-15,41;UBERON:0001890,4.78e-15,41;UBERON:0003080,4.78e-15,41;UBERON:0006240,4.78e-15,41;UBERON:0002346,5.91e-15,86;UBERON:0003075,7.12e-14,82;UBERON:0007284,7.12e-14,82;UBERON:0001893,1.06e-12,34;UBERON:0003528,1.39e-12,34;UBERON:0002020,1.39e-12,34;UBERON:0002619,5.39e-12,22;UBERON:0001869,7.38e-12,32;UBERON:0002791,1.14e-11,32;UBERON:0001950,2.29e-11,20;UBERON:0003056,3.58e-10,61;UBERON:0010371,1.28e-09,104;UBERON:0000956,2.56e-09,25;UBERON:0000203,2.56e-09,25;UBERON:0004121,3.15e-09,171;UBERON:0000924,3.15e-09,171;UBERON:0006601,3.15e-09,171;UBERON:0010314,1.53e-08,132 | |||
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| ||
|short_description=p1@HDAC5 | |||
}} | }} |
Latest revision as of 19:39, 24 September 2015
Short description: | p1@HDAC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HDAC5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000225983, ENST00000336057, ENST00000393622, NM_001015053, NM_005474, uc002ife.1, uc002iff.1, uc002ifh.2, uc010czp.1_5end |
EntrezGene: | HDAC5 |
HGNC: | 14068 |
UniProt: | Q9UQL6Q5W9G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.90e-32 | 114 |
neural tube | 3.62e-19 | 56 |
neural rod | 3.62e-19 | 56 |
future spinal cord | 3.62e-19 | 56 |
neural keel | 3.62e-19 | 56 |
regional part of nervous system | 1.07e-18 | 53 |
regional part of brain | 1.07e-18 | 53 |
nervous system | 3.41e-16 | 89 |
brain | 3.75e-16 | 68 |
future brain | 3.75e-16 | 68 |
central nervous system | 2.69e-15 | 81 |
regional part of forebrain | 4.78e-15 | 41 |
forebrain | 4.78e-15 | 41 |
anterior neural tube | 4.78e-15 | 41 |
future forebrain | 4.78e-15 | 41 |
neurectoderm | 5.91e-15 | 86 |
neural plate | 7.12e-14 | 82 |
presumptive neural plate | 7.12e-14 | 82 |
telencephalon | 1.06e-12 | 34 |
brain grey matter | 1.39e-12 | 34 |
gray matter | 1.39e-12 | 34 |
regional part of cerebral cortex | 5.39e-12 | 22 |
cerebral hemisphere | 7.38e-12 | 32 |
regional part of telencephalon | 1.14e-11 | 32 |
neocortex | 2.29e-11 | 20 |
pre-chordal neural plate | 3.58e-10 | 61 |
ecto-epithelium | 1.28e-09 | 104 |
cerebral cortex | 2.56e-09 | 25 |
pallium | 2.56e-09 | 25 |
ectoderm-derived structure | 3.15e-09 | 171 |
ectoderm | 3.15e-09 | 171 |
presumptive ectoderm | 3.15e-09 | 171 |
structure with developmental contribution from neural crest | 1.53e-08 | 132 |