FFCP PHASE1:Hg19::chr22:41957054..41957063,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27254 | |EntrezGene=27254 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30359 | |HGNC=30359 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y534 | |UniProt=Q9Y534 | ||
|association_with_transcript=40bp_to_NM_014460,uc003bak.1_5end | |association_with_transcript=40bp_to_NM_014460,uc003bak.1_5end | ||
|cluster_id=chr22:41957054..41957063,+ | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_4_at_CSDC2_5end | |description=CAGE_peak_4_at_CSDC2_5end | ||
|id=chr22:41957054..41957063,+ | |id=chr22:41957054..41957063,+ | ||
|ontology_enrichment_celltype=CL:0002598;2.13e-14;2!CL:0000222;3.11e-08;1 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0002598;2.13e-14;2!CL:0000222;3.11e-08;1 | ||
|ontology_enrichment_disease=DOID:114;4.88e-15;2!DOID:178;3.11e-08;1!DOID:326;3.11e-08;1!DOID:3978;3.11e-08;1!DOID:3394;3.11e-08;1!DOID:5844;3.11e-08;1!DOID:1287;5.99e-08;4 | |ontology_enrichment_celltype_v019_2=CL:0002598,9.74e-15,2 | ||
|ontology_enrichment_uberon=UBERON:0002298;1.53e-10;6!UBERON:0000988;6.71e-10;3!UBERON:0007100;1.52e-09;25!UBERON:0002084;2.04e-08;1!UBERON:0002082;2.04e-08;1!UBERON:0004732;2.51e-08;13!UBERON:0002135;3.11e-08;1!UBERON:0001874;7.33e-08;1!UBERON:0000941;7.33e-08;1!UBERON:0001785;7.33e-08;1!UBERON:0002464;7.33e-08;1!UBERON:0004904;7.33e-08;1!UBERON:0001021;7.33e-08;1 | |ontology_enrichment_development_v019=UBERON:0010226;2.04e-08;1!UBERON:0000358;3.11e-08;1!UBERON:0005425;7.33e-08;1 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;4.88e-15;2!DOID:178;3.11e-08;1!DOID:326;3.11e-08;1!DOID:3978;3.11e-08;1!DOID:3394;3.11e-08;1!DOID:5844;3.11e-08;1!DOID:1287;5.99e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,6.02e-15,2;DOID:178,3.83e-08,1;DOID:326,3.83e-08,1;DOID:3978,3.83e-08,1;DOID:3394,3.83e-08,1;DOID:5844,3.83e-08,1;DOID:1287,6.65e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.29e-37!115;UBERON:0003075!5.58e-27!86;UBERON:0007284!5.58e-27!86;UBERON:0001049!2.53e-25!57;UBERON:0005068!2.53e-25!57;UBERON:0006241!2.53e-25!57;UBERON:0007135!2.53e-25!57;UBERON:0002346!3.76e-25!90;UBERON:0005743!7.05e-25!86;UBERON:0000073!8.77e-24!94;UBERON:0001016!8.77e-24!94;UBERON:0002020!3.13e-23!34;UBERON:0003528!3.13e-23!34;UBERON:0000955!1.17e-22!69;UBERON:0006238!1.17e-22!69;UBERON:0001893!1.40e-22!34;UBERON:0001017!1.75e-22!82;UBERON:0002616!2.80e-22!59;UBERON:0003056!5.49e-22!61;UBERON:0002791!1.51e-21!33;UBERON:0002780!4.53e-21!41;UBERON:0001890!4.53e-21!41;UBERON:0006240!4.53e-21!41;UBERON:0001869!1.03e-20!32;UBERON:0003080!2.22e-20!42;UBERON:0000033!9.12e-19!123;UBERON:0000153!3.15e-17!129;UBERON:0007811!3.15e-17!129;UBERON:0004121!5.68e-16!169;UBERON:0000924!3.09e-15!173;UBERON:0006601!3.09e-15!173;UBERON:0000956!6.41e-15!25;UBERON:0000203!6.41e-15!25;UBERON:0002619!5.99e-14!22;UBERON:0000481!1.77e-12!347;UBERON:0000475!9.13e-12!365;UBERON:0001950!9.24e-12!20;UBERON:0000064!1.55e-10!219;UBERON:0000062!2.59e-10!511;UBERON:0002308!3.23e-10!9;UBERON:0000125!3.23e-10!9;UBERON:0000483!3.78e-09!309;UBERON:0000119!6.87e-09!312;UBERON:0000025!2.42e-08!194;UBERON:0000468!3.18e-08!659;UBERON:0002420!7.26e-08!9;UBERON:0007245!7.26e-08!9;UBERON:0010009!7.26e-08!9;UBERON:0010011!7.26e-08!9;UBERON:0000454!7.26e-08!9;UBERON:0000467!1.17e-07!625;UBERON:0000480!1.33e-07!626;UBERON:0009663!1.99e-07!7;UBERON:0004732!2.03e-07!13;UBERON:0002298!3.72e-07!8;UBERON:0001871!4.82e-07!7;UBERON:0000369!6.39e-07!4;UBERON:0002435!6.39e-07!4;UBERON:0000204!6.39e-07!4;UBERON:0010082!6.39e-07!4;UBERON:0007100!8.73e-07!27;UBERON:0000923!9.05e-07!604;UBERON:0005291!9.05e-07!604;UBERON:0006598!9.05e-07!604;UBERON:0002532!9.05e-07!604;UBERON:0004111!9.85e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.53e-10;6!UBERON:0000988;6.71e-10;3!UBERON:0007100;1.52e-09;25!UBERON:0002084;2.04e-08;1!UBERON:0002082;2.04e-08;1!UBERON:0004732;2.51e-08;13!UBERON:0002135;3.11e-08;1!UBERON:0001874;7.33e-08;1!UBERON:0000941;7.33e-08;1!UBERON:0001785;7.33e-08;1!UBERON:0002464;7.33e-08;1!UBERON:0004904;7.33e-08;1!UBERON:0001021;7.33e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.07e-19,114;UBERON:0002298,1.26e-10,6;UBERON:0000988,4.58e-10,3;UBERON:0003075,2.27e-09,82;UBERON:0007284,2.27e-09,82;UBERON:0002346,7.71e-09,86;UBERON:0007100,9.32e-09,27;UBERON:0004732,2.13e-08,13;UBERON:0002084,2.19e-08,1;UBERON:0002082,2.19e-08,1;UBERON:0010226,2.19e-08,1;UBERON:0002135,3.11e-08,1;UBERON:0001049,3.83e-08,56;UBERON:0005068,3.83e-08,56;UBERON:0006241,3.83e-08,56;UBERON:0007135,3.83e-08,56;UBERON:0000941,6.19e-08,1;UBERON:0001785,6.19e-08,1;UBERON:0002464,6.19e-08,1;UBERON:0004904,6.19e-08,1;UBERON:0001021,6.19e-08,1;UBERON:0003902,6.19e-08,1;UBERON:0005425,6.19e-08,1;UBERON:0001874,1.14e-07,1;UBERON:0003076,2.18e-07,15;UBERON:0003057,2.18e-07,15;UBERON:0010314,3.50e-07,132;UBERON:0010371,5.91e-07,104;UBERON:0001016,7.89e-07,89;UBERON:0000073,7.96e-07,53;UBERON:0002616,7.96e-07,53 | |||
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| ||
|short_description=p4@CSDC2 | |short_description=p4@CSDC2 | ||
}} | }} |
Latest revision as of 21:56, 24 September 2015
Short description: | p4@CSDC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CSDC2_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 40bp_to_NM_014460, uc003bak.1_5end |
EntrezGene: | CSDC2 |
HGNC: | 30359 |
UniProt: | Q9Y534 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial smooth muscle cell | 9.74e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.07e-19 | 114 |
brainstem | 1.26e-10 | 6 |
pons | 4.58e-10 | 3 |
neural plate | 2.27e-09 | 82 |
presumptive neural plate | 2.27e-09 | 82 |
neurectoderm | 7.71e-09 | 86 |
primary circulatory organ | 9.32e-09 | 27 |
segmental subdivision of nervous system | 2.13e-08 | 13 |
heart left ventricle | 2.19e-08 | 1 |
cardiac ventricle | 2.19e-08 | 1 |
future cardiac ventricle | 2.19e-08 | 1 |
mitral valve | 3.11e-08 | 1 |
neural tube | 3.83e-08 | 56 |
neural rod | 3.83e-08 | 56 |
future spinal cord | 3.83e-08 | 56 |
neural keel | 3.83e-08 | 56 |
cranial nerve II | 6.19e-08 | 1 |
cranial nerve | 6.19e-08 | 1 |
nerve trunk | 6.19e-08 | 1 |
nerve connecting eye with brain | 6.19e-08 | 1 |
nerve | 6.19e-08 | 1 |
retinal neural layer | 6.19e-08 | 1 |
presumptive neural retina | 6.19e-08 | 1 |
putamen | 1.14e-07 | 1 |
posterior neural tube | 2.18e-07 | 15 |
chordal neural plate | 2.18e-07 | 15 |
structure with developmental contribution from neural crest | 3.50e-07 | 132 |
ecto-epithelium | 5.91e-07 | 104 |
nervous system | 7.89e-07 | 89 |
regional part of nervous system | 7.96e-07 | 53 |
regional part of brain | 7.96e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
heart disease | 6.02e-15 | 2 |
vascular disease | 3.83e-08 | 1 |
ischemia | 3.83e-08 | 1 |
extrinsic cardiomyopathy | 3.83e-08 | 1 |
myocardial ischemia | 3.83e-08 | 1 |
myocardial infarction | 3.83e-08 | 1 |
cardiovascular system disease | 6.65e-08 | 4 |