FFCP PHASE1:Hg19::chr12:78333942..78333956,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89795 | |EntrezGene=89795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15998 | |HGNC=15998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-90bp_to_ENST00000549369_5end | |association_with_transcript=-90bp_to_ENST00000549369_5end | ||
|cluster_id=chr12:78333942..78333956,+ | |||
|coexpression_cluster_id=C1687 | |||
|description=CAGE_peak_4_at_NAV3_5end | |description=CAGE_peak_4_at_NAV3_5end | ||
|id=chr12:78333942..78333956,+ | |id=chr12:78333942..78333956,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.24e-28!180;CL:0000057!8.97e-22!75;CL:0000548!3.49e-16!679;CL:0000004!3.49e-16!679;CL:0000255!3.49e-16!679;CL:0000012!1.05e-15!682;CL:0000222!2.26e-15!119;CL:0000680!4.71e-15!57;CL:0000056!4.71e-15!57;CL:0000355!4.71e-15!57;CL:0000187!3.20e-13!54;CL:0000144!5.49e-12!625;CL:0000183!2.17e-11!59;CL:0002620!7.98e-11!23;CL:0002371!1.87e-10!591;CL:0000393!1.99e-10!60;CL:0000211!1.99e-10!60;CL:0000220!3.09e-10!246;CL:0000003!3.15e-10!722;CL:0002321!6.78e-10!248;CL:0000723!9.69e-10!436;CL:0000048!1.55e-09!430;CL:0000034!1.04e-08!444;CL:0000192!1.21e-08!42;CL:0000514!1.21e-08!42;CL:0000077!1.22e-07!19;CL:0002334!2.43e-07!12 | |ontology_enrichment_celltype=CL:0000055!1.24e-28!180;CL:0000057!8.97e-22!75;CL:0000548!3.49e-16!679;CL:0000004!3.49e-16!679;CL:0000255!3.49e-16!679;CL:0000012!1.05e-15!682;CL:0000222!2.26e-15!119;CL:0000680!4.71e-15!57;CL:0000056!4.71e-15!57;CL:0000355!4.71e-15!57;CL:0000187!3.20e-13!54;CL:0000144!5.49e-12!625;CL:0000183!2.17e-11!59;CL:0002620!7.98e-11!23;CL:0002371!1.87e-10!591;CL:0000393!1.99e-10!60;CL:0000211!1.99e-10!60;CL:0000220!3.09e-10!246;CL:0000003!3.15e-10!722;CL:0002321!6.78e-10!248;CL:0000723!9.69e-10!436;CL:0000048!1.55e-09!430;CL:0000034!1.04e-08!444;CL:0000192!1.21e-08!42;CL:0000514!1.21e-08!42;CL:0000077!1.22e-07!19;CL:0002334!2.43e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;2.06e-10;12!CL:0000134;6.65e-10;55!CL:0002620;1.42e-09;23!CL:0000048;1.07e-08;58!CL:0000723;3.06e-07;61!CL:0000056;6.06e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.26e-15,76;CL:0002334,2.76e-10,12;CL:0002620,2.02e-09,23;CL:0000048,5.95e-09,427;CL:0000723,5.99e-09,433;CL:0000034,2.40e-08,441;CL:0000515,6.24e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000515;6.06e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!1.68e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.81e-14;14!DOID:193;6.03e-07;29!DOID:17;9.53e-07;5!DOID:450;9.53e-07;5!DOID:66;9.53e-07;5!DOID:423;9.53e-07;5!DOID:0080000;9.53e-07;5!DOID:11722;9.53e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.21e-14,14;DOID:193,5.47e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.05e-19!83;UBERON:0002329!2.05e-19!83;UBERON:0003077!2.05e-19!83;UBERON:0003059!2.05e-19!83;UBERON:0007282!2.05e-19!83;UBERON:0009618!2.05e-19!83;UBERON:0007285!2.05e-19!83;UBERON:0004290!2.85e-16!70;UBERON:0000486!6.24e-15!82;UBERON:0002100!4.49e-13!216;UBERON:0001134!5.60e-13!61;UBERON:0002036!5.60e-13!61;UBERON:0003082!5.60e-13!61;UBERON:0002385!4.66e-12!63;UBERON:0001015!4.66e-12!63;UBERON:0000383!4.66e-12!63;UBERON:0005256!1.82e-10!143;UBERON:0003102!8.91e-10!95;UBERON:0002199!6.53e-09!45;UBERON:0002416!6.53e-09!45;UBERON:0002097!1.45e-08!40;UBERON:0000475!1.67e-08!365;UBERON:0000490!4.44e-08!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;1.68e-08;13!UBERON:0002118;8.69e-08;5!UBERON:0002119;3.50e-07;4!UBERON:0002097;7.83e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.45e-09,46;UBERON:0002416,1.45e-09,46;UBERON:0002097,3.40e-09,41;UBERON:0000992,2.23e-08,13;UBERON:0007524,3.87e-08,73;UBERON:0002329,7.57e-08,71;UBERON:0003059,7.57e-08,71;UBERON:0007282,7.57e-08,71;UBERON:0004290,7.57e-08,71;UBERON:0009618,7.57e-08,71;UBERON:0002118,9.65e-08,5;UBERON:0003077,1.22e-07,72;UBERON:0007285,1.22e-07,72;UBERON:0002119,4.97e-07,4 | |||
|phase1_expression=2.54349730978779,3.8538094300377,2.25527046553554,2.00146596706261,0.893922188854576,0.872338524100369,0,0.631719873426831,0,0.245733936501509,0,0,0,0,0.331397375727916,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,2.75826367343678,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.870627715885752,0.56738522469114,0,0,0,0,0.605399502633369,1.10483290796269,1.58231193720442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,0.511450247374121,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58391129576717,0,0,0.56530794192401,0.419499436209906,0,0.208994966536811,0.516833518338658,1.06729878806013,0,0,0,0,0.367663080345869,0,0.446498641420399,0.44905874525234,0.675668882899933,0,0.949265659568129,0,0,0,0,0.496971951695318,0.633152558322899,5.29636723252875,0.860509862246441,0.354668382198357,0.560677600142307,0,0.49333509683432,1.55605517699883,0.404132016209064,0.980771418680752,0.151357427644931,0,0.468642863667593,1.5608003841516,0.570471821544449,0.448346041655403,1.996386476944,1.61872944368132,3.23036855415172,1.63323337003915,1.22834317311768,0.619954687054593,1.18800285728205,0.989067717114227,1.82032272387605,0.718618141816238,0.673344455816265,1.87677779807946,4.71008996323111,1.31693286264251,4.29082914118628,0.751190294532984,0.226864366320042,2.69084453533293,1.06778694409284,1.05965950579781,2.10063767259082,1.44273540933814,2.31876486041066,0.930584281657949,1.0126579934476,1.46155507741798,0.757301322732344,1.84099797284599,0.161646056818812,2.13005755509969,0.806016785821122,0.508681776931463,3.47869535693934,0,0.573609190778008,0,0,0,0,0,0,3.12899064659632,1.92972281457866,0,2.3218396401599,0.721879481669586,0,0.168584690078102,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.514703430895577,0.548751427043128,0,2.11110842064425,0.185176890317059,0,1.03993478527958,0,0.115930404975077,0.587043471179108,1.29929802984966,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0.335964256397719,0.141775097242386,1.52249488594842,0.581267877027924,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.102827492703324,0,0,0.672786506072164,0,0.51336800074665,1.55126058909333,0,0.845302752556,1.06375246633948,1.04007436911366,0,0,0,0.428933980974443,0,0,1.62868092146868,0,1.58390374586686,0.301439377059586,0.871533458600294,0.899756920638513,0,0,0,1.67737398844108,0,4.27910715122155,3.18518874668674,2.4657158706046,2.68591444859843,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,1.03985430765404,3.7470087647404,3.31175071571263,3.16281820480326,1.20378439891088,0,0,1.32845119707087,0.368738337083406,1.21637060255316,0,0,0,0,0,0,0,0,3.47350930946288,4.75732117192994,1.96462066103151,3.71603532841533,1.02341449813341,1.44768529029247,0,2.92998418225046,1.24293207719189,4.10635780069046,1.03850885836724,0.929683027679674,0,0,0,0.68888668898764,2.1850940160806,0.655622074797121,0,0.308061348417659,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.0915694648183434,0,0,0,0,0.290012154876366,1.3864375540318,0.767518373630648,3.1702411671442,0.322260734604821,0.580066775656914,1.87498580315422,0.623224249527161,0.165284915360978,0,0.255225424989168,0,0,3.77774816196768,1.3940745403212,1.23213432070436,0,1.73986598415015,0.55597265731176,0.429374660225974,1.116475108079,1.58189712359363,1.33441135746677,0.767693373934002,0,0.95460974377781,0.78494864019923,2.69808686374972,1.92175920815238,1.88499843753098,0.606547444719948,0,0,0,1.21856744815642,0,0.409499734223957,0.424216295861138,0,0.551365343546124,0.66343897524122,1.31535265576129,0.578775534266688,0,0.608731130888112,0.30982349809975,0.281695602532241,1.00387946542836,0.491245205065606,0,9.22378766583554,0.422215270595328,0,0,0,0.865999014529609,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0.23874448473769,1.78178808499583,0,0.994147647766298,0,1.33570446027487,0.16480387422676,0,0,0,0,0,0,1.55519793830904,0.359473404589307,0.716084698702437,0,0.0986434056369336,0,3.33410970433911,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.683652335082007,0,0,0,0,0.732780747214898,0.533034776018635,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,2.1045278718029,0,0.664653872707185,0.992975867626496,3.7671950208867,2.38944859545918,0,0.277349346026277,0,0.195984794828755,0.34823682632161,0,0,0,0,0.0821154570532092,0,0,0,0.685209623233754,3.97429223405979,0,0,1.84365286578528,0,0.19980960958213,0,0,0,0.576219191952599,1.73953549791606,0,0.951329442515298,2.61507115780833,1.01998217636322,0,0,0,0,1.71906176567983,0,0,0,0,0,0,0,0,1.44119953416961,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002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| ||
|short_description=p4@NAV3 | |short_description=p4@NAV3 | ||
}} | }} |
Latest revision as of 22:32, 24 September 2015
Short description: | p4@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NAV3_5end |
Coexpression cluster: | C1687_liposarcoma_basal_Preadipocyte_Fibroblast_mesenchymal_Smooth_leiomyoma |
Association with transcript: | -90bp_to_ENST00000549369_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.26e-15 | 76 |
preadipocyte | 2.76e-10 | 12 |
skin fibroblast | 2.02e-09 | 23 |
multi fate stem cell | 5.95e-09 | 427 |
somatic stem cell | 5.99e-09 | 433 |
stem cell | 2.40e-08 | 441 |
skeletal muscle myoblast | 6.24e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
integument | 1.45e-09 | 46 |
integumental system | 1.45e-09 | 46 |
skin of body | 3.40e-09 | 41 |
female gonad | 2.23e-08 | 13 |
dense mesenchyme tissue | 3.87e-08 | 73 |
somite | 7.57e-08 | 71 |
presomitic mesoderm | 7.57e-08 | 71 |
presumptive segmental plate | 7.57e-08 | 71 |
dermomyotome | 7.57e-08 | 71 |
trunk paraxial mesoderm | 7.57e-08 | 71 |
right ovary | 9.65e-08 | 5 |
paraxial mesoderm | 1.22e-07 | 72 |
presumptive paraxial mesoderm | 1.22e-07 | 72 |
left ovary | 4.97e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.21e-14 | 14 |
reproductive organ cancer | 5.47e-07 | 29 |