FFCP PHASE1:Hg19::chr9:126777702..126777716,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:126777702..126777716,+ to FFCP PHASE1:Hg19::chr9:126777702..126777716,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9355 | |EntrezGene=9355 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6594 | |HGNC=6594 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_ENST00000488674_5end | |||
|cluster_id=chr9:126777702..126777716,+ | |||
|coexpression_cluster_id=C4632 | |||
|description=CAGE_peak_5_at_LHX2_5end | |||
|id=chr9:126777702..126777716,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.86e-09!25;CL:0002605!2.00e-07!3;CL:0000133!2.07e-07!59;CL:0002586!4.55e-07!3;CL:0000064!9.36e-07!3;CL:0005012!9.36e-07!3;CL:0000067!9.36e-07!3;CL:0002304!9.36e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.04e-35;3!CL:0002319;9.24e-21;25!CL:0000540;2.78e-18;6!CL:0000404;2.78e-18;6!CL:0000128;1.04e-15;7!CL:0000126;1.04e-15;7!CL:0000127;1.04e-15;7!CL:0000047;2.66e-07;2!CL:0000243;8.76e-07;15!CL:0000125;8.76e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.11e-35,3;CL:0000047,5.24e-24,8;CL:0002319,8.19e-21,25;CL:0000540,2.20e-18,6;CL:0000031,2.20e-18,6;CL:0000404,2.20e-18,6;CL:0000128,1.07e-15,7;CL:0000126,1.07e-15,7;CL:0000127,1.07e-15,7;CL:0002453,1.07e-15,7;CL:0000133,1.66e-11,59;CL:0000221,2.48e-09,72;CL:0000243,8.85e-07,15;CL:0000125,8.85e-07,15;CL:0000030,8.85e-07,15;CL:0000339,8.85e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000031;2.78e-18;6!CL:0000133;5.58e-08;59!CL:0000339;8.76e-07;15 | |||
|ontology_enrichment_disease=DOID:5409!7.33e-07!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!4.93e-43!32;UBERON:0003056!6.01e-42!61;UBERON:0001893!5.10e-40!34;UBERON:0002791!1.67e-38!33;UBERON:0002020!3.88e-37!34;UBERON:0003528!3.88e-37!34;UBERON:0000956!3.61e-35!25;UBERON:0000203!3.61e-35!25;UBERON:0002780!2.96e-34!41;UBERON:0001890!2.96e-34!41;UBERON:0006240!2.96e-34!41;UBERON:0003080!3.14e-33!42;UBERON:0002619!1.59e-29!22;UBERON:0005743!1.68e-29!86;UBERON:0003075!2.21e-29!86;UBERON:0007284!2.21e-29!86;UBERON:0000073!2.65e-28!94;UBERON:0001016!2.65e-28!94;UBERON:0002346!1.68e-27!90;UBERON:0001950!5.04e-26!20;UBERON:0001017!1.21e-24!82;UBERON:0001049!3.78e-22!57;UBERON:0005068!3.78e-22!57;UBERON:0006241!3.78e-22!57;UBERON:0007135!3.78e-22!57;UBERON:0000955!6.07e-22!69;UBERON:0006238!6.07e-22!69;UBERON:0002616!4.24e-21!59;UBERON:0004121!1.01e-19!169;UBERON:0000924!6.52e-19!173;UBERON:0006601!6.52e-19!173;UBERON:0000033!1.78e-18!123;UBERON:0000153!4.90e-17!129;UBERON:0007811!4.90e-17!129;UBERON:0007625!5.02e-13!11;UBERON:0001871!1.43e-12!7;UBERON:0000200!1.07e-11!6;UBERON:0000970!3.40e-11!20;UBERON:0002104!1.62e-10!21;UBERON:0000349!1.84e-10!5;UBERON:0000064!3.26e-10!219;UBERON:0002420!5.26e-10!9;UBERON:0007245!5.26e-10!9;UBERON:0010009!5.26e-10!9;UBERON:0010011!5.26e-10!9;UBERON:0000454!5.26e-10!9;UBERON:0000019!6.09e-10!19;UBERON:0000047!6.09e-10!19;UBERON:0004088!6.09e-10!19;UBERON:0003072!6.09e-10!19;UBERON:0003071!6.09e-10!19;UBERON:0004128!6.09e-10!19;UBERON:0000966!7.22e-10!5;UBERON:0005388!7.22e-10!5;UBERON:0001802!7.22e-10!5;UBERON:0000020!2.42e-09!23;UBERON:0001032!7.85e-09!24;UBERON:0004456!7.85e-09!24;UBERON:0001456!9.59e-09!21;UBERON:0000369!3.39e-08!4;UBERON:0002435!3.39e-08!4;UBERON:0000204!3.39e-08!4;UBERON:0010082!3.39e-08!4;UBERON:0000488!4.40e-08!4;UBERON:0002771!3.81e-07!3;UBERON:0001781!4.55e-07!3;UBERON:0001782!4.55e-07!3;UBERON:0005424!4.55e-07!3;UBERON:0005383!9.18e-07!3;UBERON:0005382!9.18e-07!3;UBERON:0001778!9.36e-07!3;UBERON:0001775!9.36e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;8.94e-44;25!UBERON:0000203;8.94e-44;25!UBERON:0002791;3.71e-33;32!UBERON:0001869;5.33e-33;32!UBERON:0001893;3.30e-30;34!UBERON:0003528;1.02e-29;34!UBERON:0002020;1.02e-29;34!UBERON:0001871;2.53e-27;6!UBERON:0001950;8.09e-27;20!UBERON:0002619;1.91e-24;22!UBERON:0001876;3.34e-24;2!UBERON:0002780;3.78e-18;41!UBERON:0001890;3.78e-18;41!UBERON:0000073;1.26e-13;53!UBERON:0002616;1.26e-13;53!UBERON:0000349;2.84e-10;5!UBERON:0000955;1.74e-09;68!UBERON:0000200;8.24e-09;6!UBERON:0001017;2.42e-08;75!UBERON:0001016;3.46e-08;83!UBERON:0002771;2.28e-07;2!UBERON:0002702;4.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.00e-43,25;UBERON:0000203,1.00e-43,25;UBERON:0002791,3.19e-34,32;UBERON:0001869,3.19e-34,32;UBERON:0003528,3.33e-32,34;UBERON:0002020,3.33e-32,34;UBERON:0001893,3.33e-32,34;UBERON:0001871,2.54e-27,6;UBERON:0001950,8.75e-27,20;UBERON:0002780,1.20e-26,41;UBERON:0001890,1.20e-26,41;UBERON:0003080,1.20e-26,41;UBERON:0006240,1.20e-26,41;UBERON:0001017,5.76e-26,81;UBERON:0002619,2.06e-24,22;UBERON:0001876,3.34e-24,2;UBERON:0001016,2.95e-23,89;UBERON:0003056,2.03e-21,61;UBERON:0000073,1.82e-20,53;UBERON:0002616,1.82e-20,53;UBERON:0001049,2.51e-19,56;UBERON:0005068,2.51e-19,56;UBERON:0006241,2.51e-19,56;UBERON:0007135,2.51e-19,56;UBERON:0003075,1.20e-15,82;UBERON:0007284,1.20e-15,82;UBERON:0000955,1.64e-15,68;UBERON:0006238,1.64e-15,68;UBERON:0002346,7.30e-15,86;UBERON:0004121,2.65e-13,171;UBERON:0000924,2.65e-13,171;UBERON:0006601,2.65e-13,171;UBERON:0010371,4.56e-12,104;UBERON:0000349,2.84e-10,5;UBERON:0011216,1.01e-09,223;UBERON:0010314,3.25e-09,132;UBERON:0000200,8.91e-09,6;UBERON:0002771,2.43e-07,2;UBERON:0002702,4.98e-07,2 | |||
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| ||
|short_description=p5@LHX2 | |||
}} | }} |
Latest revision as of 23:22, 24 September 2015
Short description: | p5@LHX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LHX2_5end |
Coexpression cluster: | C4632_Neurons_parietal_medial_Neural_occipital_Astrocyte_duodenum |
Association with transcript: | 26bp_to_ENST00000488674_5end |
EntrezGene: | LHX2 |
HGNC: | 6594 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.11e-35 | 3 |
neuronal stem cell | 5.24e-24 | 8 |
neural cell | 8.19e-21 | 25 |
neuron | 2.20e-18 | 6 |
neuroblast | 2.20e-18 | 6 |
electrically signaling cell | 2.20e-18 | 6 |
oligodendrocyte | 1.07e-15 | 7 |
macroglial cell | 1.07e-15 | 7 |
astrocyte | 1.07e-15 | 7 |
oligodendrocyte precursor cell | 1.07e-15 | 7 |
neurectodermal cell | 1.66e-11 | 59 |
ectodermal cell | 2.48e-09 | 72 |
glial cell (sensu Vertebrata) | 8.85e-07 | 15 |
glial cell | 8.85e-07 | 15 |
glioblast | 8.85e-07 | 15 |
glioblast (sensu Vertebrata) | 8.85e-07 | 15 |