FFCP PHASE1:Hg19::chr3:139396787..139396798,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=349565 | |EntrezGene=349565 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20989 | |HGNC=20989 | ||
|TSSclassifier=strong | |||
|UniProt=Q96T66,D6RHV4 | |UniProt=Q96T66,D6RHV4 | ||
|association_with_transcript=0bp_to_ENST00000296202,ENST00000509291_5end | |association_with_transcript=0bp_to_ENST00000296202,ENST00000509291_5end | ||
|cluster_id=chr3:139396787..139396798,- | |||
|description=CAGE_peak_3_at_NMNAT3_5end | |description=CAGE_peak_3_at_NMNAT3_5end | ||
|id=chr3:139396787..139396798,- | |id=chr3:139396787..139396798,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000764;1.71e-18;2!CL:0000558;1.71e-18;2!CL:0000840;5.15e-14;5!CL:0002032;7.22e-10;1!CL:0000557;7.22e-10;1!CL:0000990;1.62e-09;8!CL:0000451;7.15e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.20e-18,2;CL:0000765,1.20e-18,2;CL:0000050,1.20e-18,2;CL:0000038,1.20e-18,2;CL:0000558,1.20e-18,2;CL:0000547,1.20e-18,2;CL:0000549,1.20e-18,2;CL:0000550,1.20e-18,2;CL:0000552,1.20e-18,2;CL:0000840,5.88e-14,5;CL:0001029,5.88e-14,5;CL:0000763,2.20e-11,108;CL:0000049,2.20e-11,108;CL:0000990,1.77e-09,8;CL:0000451,7.68e-08,10;CL:0002032,6.21e-07,161;CL:0000837,6.21e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!2.31e-08!31 | |ontology_enrichment_disease=DOID:8692!2.31e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.66e-12;31!DOID:3119;4.81e-10;14!DOID:1240;9.24e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,4.11e-13,31;DOID:1240,2.86e-10,39;DOID:3119,4.87e-10,14;DOID:2531,1.13e-07,51;DOID:0060083,1.13e-07,51;DOID:0050686,4.29e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.72e-13!115;UBERON:0001049!3.34e-10!57;UBERON:0005068!3.34e-10!57;UBERON:0006241!3.34e-10!57;UBERON:0007135!3.34e-10!57;UBERON:0005743!5.50e-10!86;UBERON:0002616!1.41e-09!59;UBERON:0002346!1.41e-09!90;UBERON:0002780!1.52e-09!41;UBERON:0001890!1.52e-09!41;UBERON:0006240!1.52e-09!41;UBERON:0003080!3.64e-09!42;UBERON:0003056!7.35e-09!61;UBERON:0000955!9.78e-09!69;UBERON:0006238!9.78e-09!69;UBERON:0003075!2.36e-08!86;UBERON:0007284!2.36e-08!86;UBERON:0000073!4.42e-08!94;UBERON:0001016!4.42e-08!94;UBERON:0000153!4.91e-08!129;UBERON:0007811!4.91e-08!129;UBERON:0000033!6.87e-08!123;UBERON:0001017!8.60e-08!82;UBERON:0001893!4.78e-07!34 | |ontology_enrichment_uberon=UBERON:0007023!3.72e-13!115;UBERON:0001049!3.34e-10!57;UBERON:0005068!3.34e-10!57;UBERON:0006241!3.34e-10!57;UBERON:0007135!3.34e-10!57;UBERON:0005743!5.50e-10!86;UBERON:0002616!1.41e-09!59;UBERON:0002346!1.41e-09!90;UBERON:0002780!1.52e-09!41;UBERON:0001890!1.52e-09!41;UBERON:0006240!1.52e-09!41;UBERON:0003080!3.64e-09!42;UBERON:0003056!7.35e-09!61;UBERON:0000955!9.78e-09!69;UBERON:0006238!9.78e-09!69;UBERON:0003075!2.36e-08!86;UBERON:0007284!2.36e-08!86;UBERON:0000073!4.42e-08!94;UBERON:0001016!4.42e-08!94;UBERON:0000153!4.91e-08!129;UBERON:0007811!4.91e-08!129;UBERON:0000033!6.87e-08!123;UBERON:0001017!8.60e-08!82;UBERON:0001893!4.78e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.54e-18;2!UBERON:0002757;2.54e-18;2!UBERON:0010134;2.54e-18;2!UBERON:0005408;2.54e-18;2!UBERON:0001899;2.54e-18;2!UBERON:0003296;1.25e-09;4!UBERON:0010133;1.25e-09;4!UBERON:0002784;1.25e-09;4!UBERON:0001052;1.81e-09;4!UBERON:0004907;9.54e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.11e-18,2;UBERON:0002757,4.11e-18,2;UBERON:0010134,4.11e-18,2;UBERON:0005408,4.11e-18,2;UBERON:0001899,4.11e-18,2;UBERON:0003296,1.59e-09,4;UBERON:0010133,1.59e-09,4;UBERON:0002784,1.59e-09,4;UBERON:0001052,1.81e-09,4;UBERON:0004907,9.55e-08,5 | |||
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| ||
|short_description=p3@NMNAT3 | |short_description=p3@NMNAT3 | ||
}} | }} |
Latest revision as of 02:08, 25 September 2015
Short description: | p3@NMNAT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NMNAT3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000296202, ENST00000509291_5end |
EntrezGene: | NMNAT3 |
HGNC: | 20989 |
UniProt: | Q96T66D6RHV4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.20e-18 | 2 |
erythroblast | 1.20e-18 | 2 |
megakaryocyte-erythroid progenitor cell | 1.20e-18 | 2 |
erythroid progenitor cell | 1.20e-18 | 2 |
reticulocyte | 1.20e-18 | 2 |
proerythroblast | 1.20e-18 | 2 |
basophilic erythroblast | 1.20e-18 | 2 |
polychromatophilic erythroblast | 1.20e-18 | 2 |
orthochromatic erythroblast | 1.20e-18 | 2 |
immature conventional dendritic cell | 5.88e-14 | 5 |
common dendritic progenitor | 5.88e-14 | 5 |
myeloid cell | 2.20e-11 | 108 |
common myeloid progenitor | 2.20e-11 | 108 |
conventional dendritic cell | 1.77e-09 | 8 |
dendritic cell | 7.68e-08 | 10 |
hematopoietic oligopotent progenitor cell | 6.21e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.21e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
pineal body | 4.11e-18 | 2 |
regional part of epithalamus | 4.11e-18 | 2 |
secretory circumventricular organ | 4.11e-18 | 2 |
circumventricular organ | 4.11e-18 | 2 |
epithalamus | 4.11e-18 | 2 |
gland of diencephalon | 1.59e-09 | 4 |
neuroendocrine gland | 1.59e-09 | 4 |
regional part of diencephalon | 1.59e-09 | 4 |
rectum | 1.81e-09 | 4 |
lower digestive tract | 9.55e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 4.11e-13 | 31 |
leukemia | 2.86e-10 | 39 |
gastrointestinal system cancer | 4.87e-10 | 14 |
hematologic cancer | 1.13e-07 | 51 |
immune system cancer | 1.13e-07 | 51 |
organ system cancer | 4.29e-07 | 137 |