FFCP PHASE1:Hg19::chr1:21835461..21835482,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=249 | |EntrezGene=249 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=438 | |HGNC=438 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z387,B7Z4Y6,P05186 | |UniProt=B7Z387,B7Z4Y6,P05186 | ||
|association_with_transcript=-375bp_to_ENST00000539907,ENST00000540617,NM_000478,NM_001127501,NM_001177520,uc001bet.2,uc010odn.1,uc010odo.1,uc010odp.1_5end | |association_with_transcript=-375bp_to_ENST00000539907,ENST00000540617,NM_000478,NM_001127501,NM_001177520,uc001bet.2,uc010odn.1,uc010odo.1,uc010odp.1_5end | ||
|cluster_id=chr1:21835461..21835482,+ | |||
|description=CAGE_peak_3_at_ALPL_5end | |description=CAGE_peak_3_at_ALPL_5end | ||
|id=chr1:21835461..21835482,+ | |id=chr1:21835461..21835482,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.63e-11;13!CL:0000771;1.06e-09;2!CL:0002617;1.47e-09;2!CL:0000094;4.28e-09;8!CL:0000775;4.93e-07;3!CL:0000515;5.70e-07;3!CL:0002521;7.08e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000771,9.81e-10,2;CL:0000136,1.01e-09,15;CL:0002617,2.52e-09,2;CL:0000094,3.83e-09,8;CL:0000775,4.46e-07,3;CL:0002521,6.33e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.78e-29!115;UBERON:0001893!2.79e-16!34;UBERON:0002780!1.28e-15!41;UBERON:0001890!1.28e-15!41;UBERON:0006240!1.28e-15!41;UBERON:0002791!2.46e-15!33;UBERON:0003080!4.96e-15!42;UBERON:0001869!5.40e-15!32;UBERON:0002616!2.72e-14!59;UBERON:0000955!3.36e-14!69;UBERON:0006238!3.36e-14!69;UBERON:0001950!5.42e-14!20;UBERON:0002619!1.31e-13!22;UBERON:0001017!1.35e-13!82;UBERON:0005743!2.60e-13!86;UBERON:0002020!2.68e-13!34;UBERON:0003528!2.68e-13!34;UBERON:0001049!4.15e-13!57;UBERON:0005068!4.15e-13!57;UBERON:0006241!4.15e-13!57;UBERON:0007135!4.15e-13!57;UBERON:0000956!1.56e-12!25;UBERON:0000203!1.56e-12!25;UBERON:0000073!7.44e-11!94;UBERON:0001016!7.44e-11!94;UBERON:0003075!1.19e-09!86;UBERON:0007284!1.19e-09!86;UBERON:0002346!9.60e-09!90;UBERON:0003056!1.40e-08!61;UBERON:0000200!3.68e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.86e-18;20!UBERON:0000200;5.56e-17;6!UBERON:0002619;1.64e-16;22!UBERON:0000956;2.21e-14;25!UBERON:0000203;2.21e-14;25!UBERON:0001869;2.34e-13;32!UBERON:0001893;2.41e-13;34!UBERON:0002791;2.16e-11;32!UBERON:0003528;6.54e-11;34!UBERON:0002020;6.54e-11;34!UBERON:0002771;3.36e-09;2!UBERON:0002780;3.42e-08;41!UBERON:0001890;3.42e-08;41!UBERON:0001872;5.91e-08;5!UBERON:0002190;7.08e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,3.75e-18,20;UBERON:0000200,6.66e-17,6;UBERON:0002619,2.09e-16,22;UBERON:0001869,8.12e-16,32;UBERON:0001893,9.09e-15,34;UBERON:0000956,2.73e-14,25;UBERON:0000203,2.73e-14,25;UBERON:0002791,2.90e-13,32;UBERON:0003528,2.23e-12,34;UBERON:0002020,2.23e-12,34;UBERON:0002780,6.90e-12,41;UBERON:0001890,6.90e-12,41;UBERON:0003080,6.90e-12,41;UBERON:0006240,6.90e-12,41;UBERON:0007023,4.65e-10,114;UBERON:0002771,2.04e-09,2;UBERON:0001017,2.71e-09,81;UBERON:0000955,1.05e-08,68;UBERON:0006238,1.05e-08,68;UBERON:0000073,1.06e-08,53;UBERON:0002616,1.06e-08,53;UBERON:0003056,1.40e-08,61;UBERON:0001049,4.05e-08,56;UBERON:0005068,4.05e-08,56;UBERON:0006241,4.05e-08,56;UBERON:0007135,4.05e-08,56;UBERON:0001016,4.75e-08,89;UBERON:0001872,1.17e-07,5;UBERON:0002190,6.33e-07,3;UBERON:0003075,8.45e-07,82;UBERON:0007284,8.45e-07,82 | |||
|phase1_expression=1.09007027562334,2.14100523890983,0.845726424575827,0,0,0,2.53299878168311,2.52687949370732,0.261185628199839,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674170453335254,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.72038491523742,0,0,0.97364218096405,0.348259474598534,1.99436940778298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,1.40402559083543,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02693829334611,0.205476322550383,3.58121926479791,0,0,0,0,0,1.30139853857622,0,0,0,2.99602809578873,0,5.38740167466846,0,0,0,0,0,0,0,1.80567659836631,0,0,0,0.368738337083406,0,0.391602314925481,0,0,0,0,0,0,0,0.496215615637554,0.61384789315225,1.12264037773229,0.256278298511402,0,0.321707842287215,0,0,0,0.246381468041427,0,0.116210378459959,0.120859449591622,0,0,0.34444334449382,1.0925470080403,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.412164046590889,0.54941678891006,1.07262349896764,0,0,0,0,0.308097234229289,0,0,0,0,0.0852266274161009,0.712256285173899,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0.372158369359667,0,0,0.767693373934002,0,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,3.0585488285695,1.13929437434833,0.714695326373367,0.822724546172388,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0.828851746593443,0,0,0,0.311039587661807,0,0,0,0.591860433821602,0,0,1.93866549219044,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0.291604613383254,0,0,0.241192877250816,0,0.331737779793674,0,1.53569778007781,0.10893846351899,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0.404406797884062,0,0,0,0,0,0,0,0.30607276163049,0.505492637027904,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,2.40581024632339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.687481272035051,1.43574604915363,0.399358000997982,0.429226048136571,1.56220020209311,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0.136203406111576,0,0.137539436597234,0,0,0,3.09822738955926,0,0.315222829196793,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,3.3707013745959,0,0,0,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,1.2534494701135,0.306345576763462,1.96723578425883,0,0.886068179966986,1.95242023843141,1.3771002377715,0,0,0.124192805882767,0.138348634936231,0,0,0,0,0,0,0.895528817321244,0.701139929541673,2.21922344601045,0.189403005275089,0.251567901752575,0,0.457680136793847,1.20984739010591,0,0,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0,0.464033759878494,0.398095888698616,3.60024988196838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,1.38258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,2.0553352030867,0,0.319267718114302,1.43581454968528,0.252071696221718,0.691572524642179,0.322951291263702,0,0,0,0,0,0,0,0.596748666348824,0,0.20170506870352,0.781514011233092,0,0,0,1.2156765231311,0.781078098613847,0,1.20490039368423,1.09394961803644,0.548257766857182,0.496211178389294,0,0.127762427639595,0.535701835878287,0,0,0.227662191351298,0,0,0,0.271878931907327,1.05236437700559,0,0,0.078493092850514,0.314231179832004,0,0,0,0,1.00067161847319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0.219881033490858,0,0.231522474323834,0,0,0,0,0,0,0,0.169927114687817,0.187967835959707,0.386747327841463,0,0,0,0,0,0,0.143339583151451,0,4.01149792126397,0.436350690340377,0,0,0.462175628631418,0,0,0.218531143927391,0,0.305966489225945,0.26721740526556,0.827054095813604,0,0.0757786982182394,0,0,0.20686599172379,0,0,0.0645889098360061,0,0,0.12729431655633,0,0.217716747896961,0,0.336760265072938,0.645499848534087,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0.665756774185513,0,0 | |phase1_expression=1.09007027562334,2.14100523890983,0.845726424575827,0,0,0,2.53299878168311,2.52687949370732,0.261185628199839,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674170453335254,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.72038491523742,0,0,0.97364218096405,0.348259474598534,1.99436940778298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,1.40402559083543,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02693829334611,0.205476322550383,3.58121926479791,0,0,0,0,0,1.30139853857622,0,0,0,2.99602809578873,0,5.38740167466846,0,0,0,0,0,0,0,1.80567659836631,0,0,0,0.368738337083406,0,0.391602314925481,0,0,0,0,0,0,0,0.496215615637554,0.61384789315225,1.12264037773229,0.256278298511402,0,0.321707842287215,0,0,0,0.246381468041427,0,0.116210378459959,0.120859449591622,0,0,0.34444334449382,1.0925470080403,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.412164046590889,0.54941678891006,1.07262349896764,0,0,0,0,0.308097234229289,0,0,0,0,0.0852266274161009,0.712256285173899,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0.372158369359667,0,0,0.767693373934002,0,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,3.0585488285695,1.13929437434833,0.714695326373367,0.822724546172388,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0.828851746593443,0,0,0,0.311039587661807,0,0,0,0.591860433821602,0,0,1.93866549219044,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0.291604613383254,0,0,0.241192877250816,0,0.331737779793674,0,1.53569778007781,0.10893846351899,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0.404406797884062,0,0,0,0,0,0,0,0.30607276163049,0.505492637027904,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,2.40581024632339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.687481272035051,1.43574604915363,0.399358000997982,0.429226048136571,1.56220020209311,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0.136203406111576,0,0.137539436597234,0,0,0,3.09822738955926,0,0.315222829196793,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,3.3707013745959,0,0,0,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,1.2534494701135,0.306345576763462,1.96723578425883,0,0.886068179966986,1.95242023843141,1.3771002377715,0,0,0.124192805882767,0.138348634936231,0,0,0,0,0,0,0.895528817321244,0.701139929541673,2.21922344601045,0.189403005275089,0.251567901752575,0,0.457680136793847,1.20984739010591,0,0,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0,0.464033759878494,0.398095888698616,3.60024988196838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,1.38258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,2.0553352030867,0,0.319267718114302,1.43581454968528,0.252071696221718,0.691572524642179,0.322951291263702,0,0,0,0,0,0,0,0.596748666348824,0,0.20170506870352,0.781514011233092,0,0,0,1.2156765231311,0.781078098613847,0,1.20490039368423,1.09394961803644,0.548257766857182,0.496211178389294,0,0.127762427639595,0.535701835878287,0,0,0.227662191351298,0,0,0,0.271878931907327,1.05236437700559,0,0,0.078493092850514,0.314231179832004,0,0,0,0,1.00067161847319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0.219881033490858,0,0.231522474323834,0,0,0,0,0,0,0,0.169927114687817,0.187967835959707,0.386747327841463,0,0,0,0,0,0,0.143339583151451,0,4.01149792126397,0.436350690340377,0,0,0.462175628631418,0,0,0.218531143927391,0,0.305966489225945,0.26721740526556,0.827054095813604,0,0.0757786982182394,0,0,0.20686599172379,0,0,0.0645889098360061,0,0,0.12729431655633,0,0.217716747896961,0,0.336760265072938,0.645499848534087,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0.665756774185513,0,0 | ||
|short_description=p3@ALPL | |short_description=p3@ALPL | ||
}} | }} |
Latest revision as of 04:26, 25 September 2015
Short description: | p3@ALPL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ALPL_5end |
Coexpression cluster: | NA |
Association with transcript: | -375bp_to_ENST00000539907, ENST00000540617, NM_000478, NM_001127501, NM_001177520, uc001bet.2, uc010odn.1, uc010odo.1, uc010odp.1_5end |
EntrezGene: | ALPL |
HGNC: | 438 |
UniProt: | B7Z387B7Z4Y6P05186 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eosinophil | 9.81e-10 | 2 |
fat cell | 1.01e-09 | 15 |
adipocyte of breast | 2.52e-09 | 2 |
granulocyte | 3.83e-09 | 8 |
neutrophil | 4.46e-07 | 3 |
subcutaneous fat cell | 6.33e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neocortex | 3.75e-18 | 20 |
gyrus | 6.66e-17 | 6 |
regional part of cerebral cortex | 2.09e-16 | 22 |
cerebral hemisphere | 8.12e-16 | 32 |
telencephalon | 9.09e-15 | 34 |
cerebral cortex | 2.73e-14 | 25 |
pallium | 2.73e-14 | 25 |
regional part of telencephalon | 2.90e-13 | 32 |
brain grey matter | 2.23e-12 | 34 |
gray matter | 2.23e-12 | 34 |
regional part of forebrain | 6.90e-12 | 41 |
forebrain | 6.90e-12 | 41 |
anterior neural tube | 6.90e-12 | 41 |
future forebrain | 6.90e-12 | 41 |
adult organism | 4.65e-10 | 114 |
middle temporal gyrus | 2.04e-09 | 2 |
central nervous system | 2.71e-09 | 81 |
brain | 1.05e-08 | 68 |
future brain | 1.05e-08 | 68 |
regional part of nervous system | 1.06e-08 | 53 |
regional part of brain | 1.06e-08 | 53 |
pre-chordal neural plate | 1.40e-08 | 61 |
neural tube | 4.05e-08 | 56 |
neural rod | 4.05e-08 | 56 |
future spinal cord | 4.05e-08 | 56 |
neural keel | 4.05e-08 | 56 |
nervous system | 4.75e-08 | 89 |
parietal lobe | 1.17e-07 | 5 |
subcutaneous adipose tissue | 6.33e-07 | 3 |
neural plate | 8.45e-07 | 82 |
presumptive neural plate | 8.45e-07 | 82 |