FFCP PHASE1:Hg19::chr9:130540998..130541013,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10044 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16884 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N5H7 | |||
|association_with_transcript=6bp_to_ENST00000314830_5end | |||
|cluster_id=chr9:130540998..130541013,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_8_at_SH2D3C_5end | |||
|id=chr9:130540998..130541013,- | |||
|ontology_enrichment_celltype=CL:0000738!3.80e-59!140;CL:0000037!2.91e-57!172;CL:0000566!2.91e-57!172;CL:0002032!1.91e-52!165;CL:0000837!1.91e-52!165;CL:0000988!6.15e-52!182;CL:0002087!8.41e-51!119;CL:0002031!2.39e-48!124;CL:0000542!6.73e-29!53;CL:0000051!6.73e-29!53;CL:0000766!5.93e-28!76;CL:0000838!6.50e-28!52;CL:0000763!2.28e-23!112;CL:0000049!2.28e-23!112;CL:0000557!4.16e-22!71;CL:0000945!1.87e-21!24;CL:0000826!1.87e-21!24;CL:0000839!3.17e-21!70;CL:0002057!9.19e-21!42;CL:0002194!4.65e-19!63;CL:0000576!4.65e-19!63;CL:0000040!4.65e-19!63;CL:0000559!4.65e-19!63;CL:0000860!1.38e-18!45;CL:0002009!4.81e-18!65;CL:0000236!2.89e-12!14;CL:0000134!2.04e-10!358;CL:0002320!1.18e-09!365;CL:0000791!1.33e-08!18;CL:0000789!1.33e-08!18;CL:0002420!1.33e-08!18;CL:0002419!1.33e-08!18;CL:0000790!1.33e-08!18;CL:0000084!7.71e-08!25;CL:0000827!7.71e-08!25;CL:0002393!9.97e-08!9;CL:0002397!9.97e-08!9;CL:0000094!1.47e-07!8;CL:0000219!4.44e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.34e-26;24!CL:0000542;1.83e-13;53!CL:0000236;2.54e-13;13!CL:0000094;3.50e-13;8!CL:0000775;5.57e-10;3!CL:0000081;2.35e-09;11!CL:0000738;9.94e-08;136!CL:0000771;2.23e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,7.45e-30,168;CL:0000988,1.11e-27,177;CL:0000738,1.31e-27,136;CL:0002032,2.72e-27,161;CL:0000837,2.72e-27,161;CL:0000945,1.28e-26,24;CL:0000826,1.28e-26,24;CL:0000542,7.53e-24,53;CL:0000051,7.53e-24,53;CL:0000838,3.26e-22,52;CL:0002087,2.00e-19,115;CL:0002031,3.14e-18,120;CL:0000236,2.42e-15,14;CL:0000094,4.18e-13,8;CL:0000775,4.45e-10,3;CL:0000081,2.67e-09,11;CL:0000763,2.65e-08,108;CL:0000049,2.65e-08,108;CL:0000134,1.08e-07,354;CL:0000766,1.23e-07,72;CL:0000771,2.31e-07,2;CL:0002320,2.53e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000051;1.83e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.38e-31!102;UBERON:0003061!3.38e-31!102;UBERON:0002193!6.36e-29!112;UBERON:0002371!3.97e-20!80;UBERON:0001474!2.39e-18!86;UBERON:0002405!2.15e-17!115;UBERON:0004765!2.89e-13!101;UBERON:0001434!2.89e-13!101;UBERON:0002384!5.56e-09!375;UBERON:0000178!5.41e-08!15;UBERON:0000179!5.41e-08!15;UBERON:0000463!5.41e-08!15;UBERON:0003081!4.16e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;3.28e-14;32!UBERON:0000178;9.85e-11;15!UBERON:0000179;9.85e-11;15!UBERON:0000463;9.85e-11;15!UBERON:0002193;5.27e-10;42!UBERON:0004177;2.16e-09;5!UBERON:0005057;2.16e-09;5!UBERON:0002370;2.58e-07;2!UBERON:0005058;2.58e-07;2!UBERON:0009113;2.58e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.28e-14,108;UBERON:0002390,6.29e-14,98;UBERON:0003061,6.29e-14,98;UBERON:0000178,1.06e-10,15;UBERON:0000179,1.06e-10,15;UBERON:0000463,1.06e-10,15;UBERON:0004177,4.22e-10,7;UBERON:0005057,4.22e-10,7;UBERON:0002405,3.61e-08,93;UBERON:0002370,1.45e-07,4;UBERON:0005058,1.45e-07,4;UBERON:0009113,1.45e-07,4;UBERON:0003295,1.45e-07,4;UBERON:0005562,1.45e-07,4;UBERON:0002384,8.03e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36218985290986,2.13461532569859,3.38456359648821,0.393364276848904,0,1.08371286321253,0,0,0,1.62681121218633,0.426507697462265,1.17440175733939,0.553995408531877,0.601633342410425,1.08505435357926,0.223915474239924,0,0.257575567634187,1.30858414901608,0.755751887377619,1.69808842831471,0.697287110717054,0.411167888021826,0.929119112685311,0.575384784644301,1.2808035326455,0,0.344745680736619,0,0,0.941211697713023,0.272906150057846,0,1.22433556948361,0.641858054152187,0.639337125799041,0.329851300186716,0,0.426224750532694,0.580418477257168,1.13477044938228,0,1.00499466102697,2.08593167368081,0.65156653411535,0.605399502633369,0,0.632924774881769,0.211255286311942,0.637812899895131,0.419317291016752,0.561643155732475,0.600707571366025,0.803627933485401,1.99508920618874,0.19891667719909,0.91332076882317,0,2.73069305631066,3.55803701545422,4.26730222566507,3.2031678962881,3.4485146397269,4.62731410949403,2.86216126360609,1.70763890732835,0.587237189370939,0.382273228125229,0,0,2.10707267820062,0.196709770113833,1.17903228824749,0.205601498999509,0.501559486172034,0.977766799900771,0,0,0.668462741311041,0,0,1.62482318259009,1.0247305578054,0.520237390239513,1.31550323682941,0.552700035571697,0,0.741432815810302,0.535081656179426,2.09071047609954,0.679856056185397,0,1.37450978193052,0.759059076058509,1.59282707162048,0,0.950452044448374,0.301150238155546,0.383959833463255,0,1.18388626022008,2.46338399076314,0.403213486449465,1.33720097891754,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0.324547393654683,0.348259474598534,0.930705723632056,2.62339686735876,1.71598473234038,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,15.511210565933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0.148631162288728,0,0,0,0,0,0,0.492663237895943,2.20121085033065,1.03664057770386,0.432359860250884,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91421374383171,0.197030760201927,0.215627574859517,1.02674429023799,0,0,0,0,0,6.74106321552464,2.99161459204025,10.7748033493369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.862856803274467,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,0,5.12682468456746,1.19115887728894,2.46817363851717,1.29694662238543,0.540031437238115,4.75875105776562,0,0,0,1.85803175125719,0.577076851905779,0.497992903438899,0,0.199579371432817,1.91505370132367,0.211673582723883,0,0.561594356226918,5.934101654863,0,0,1.69291777801603,0,0,0.425846237690326,0,0,0.671028323677248,0.166849141711909,0.390776190804081,0,0,0,0,0,0,0.293016358543788,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0.492339221844278,0,0,0,1.53471711068062,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,2.04074333313532,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.269604531922708,0.802577647298789,0.234264445725339,0.182454789215666,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55493176133945,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0.470284307407084,0,0,0,0,0,0,0.76205998859206,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0.157363764404994,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0.26446520348538,0,0,0.747511887973863,0,1.24271716604159,1.9846640872478,1.58089305518355,2.31405936923702,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.533458648470704,1.20550485762571,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.867479195013787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0.0887023701626388,1.03710588800201,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,2.3196288626764,0,0,0,0,0,0,0,0.0771741581079447,0.655678681511872,0,0.245148321753905,0,0.196308467114945,0,0,0,1.12780701575824,1.4180735354187,0.199882311849858,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0.310298987585686,0,1.66645102024618,5.2962906065525,5.4625748580355,0,0,0.404234377916439,0,0.684466602170562,2.35732185551056,0.0717222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| |||
|short_description=p8@SH2D3C | |||
}} |
Latest revision as of 05:16, 25 September 2015
Short description: | p8@SH2D3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SH2D3C_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 6bp_to_ENST00000314830_5end |
EntrezGene: | SH2D3C |
HGNC: | 16884 |
UniProt: | Q8N5H7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 7.45e-30 | 168 |
hematopoietic cell | 1.11e-27 | 177 |
leukocyte | 1.31e-27 | 136 |
hematopoietic oligopotent progenitor cell | 2.72e-27 | 161 |
hematopoietic multipotent progenitor cell | 2.72e-27 | 161 |
lymphocyte of B lineage | 1.28e-26 | 24 |
pro-B cell | 1.28e-26 | 24 |
lymphocyte | 7.53e-24 | 53 |
common lymphoid progenitor | 7.53e-24 | 53 |
lymphoid lineage restricted progenitor cell | 3.26e-22 | 52 |
nongranular leukocyte | 2.00e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 3.14e-18 | 120 |
B cell | 2.42e-15 | 14 |
granulocyte | 4.18e-13 | 8 |
neutrophil | 4.45e-10 | 3 |
blood cell | 2.67e-09 | 11 |
myeloid cell | 2.65e-08 | 108 |
common myeloid progenitor | 2.65e-08 | 108 |
mesenchymal cell | 1.08e-07 | 354 |
myeloid leukocyte | 1.23e-07 | 72 |
eosinophil | 2.31e-07 | 2 |
connective tissue cell | 2.53e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.28e-14 | 108 |
hematopoietic system | 6.29e-14 | 98 |
blood island | 6.29e-14 | 98 |
blood | 1.06e-10 | 15 |
haemolymphatic fluid | 1.06e-10 | 15 |
organism substance | 1.06e-10 | 15 |
hemopoietic organ | 4.22e-10 | 7 |
immune organ | 4.22e-10 | 7 |
immune system | 3.61e-08 | 93 |
thymus | 1.45e-07 | 4 |
hemolymphoid system gland | 1.45e-07 | 4 |
thymic region | 1.45e-07 | 4 |
pharyngeal gland | 1.45e-07 | 4 |
thymus primordium | 1.45e-07 | 4 |
connective tissue | 8.03e-07 | 371 |