FFCP PHASE1:Hg19::chr19:11546443..11546485,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:11546443..11546485,+
|short_description=p1@PRKCSH
|description=CAGE_peak_1_at_PRKCSH_5end
|association_with_transcript=0bp_to_uc002mrv.1_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5589 | |EntrezGene=5589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9411 | |HGNC=9411 | ||
|TSSclassifier=strong | |||
|UniProt=A2VCQ4 | |UniProt=A2VCQ4 | ||
|association_with_transcript=0bp_to_uc002mrv.1_5end | |||
|cluster_id=chr19:11546443..11546485,+ | |||
|coexpression_cluster_id=C345 | |||
|description=CAGE_peak_1_at_PRKCSH_5end | |||
|id=chr19:11546443..11546485,+ | |||
|ontology_enrichment_celltype=CL:0000012!6.50e-32!682;CL:0000548!1.06e-31!679;CL:0000004!1.06e-31!679;CL:0000255!1.06e-31!679;CL:0000144!1.20e-26!625;CL:0002371!6.28e-23!591;CL:0000055!5.64e-21!180;CL:0000003!2.63e-20!722;CL:0000220!7.06e-13!246;CL:0002321!8.22e-13!248;CL:0000222!1.12e-12!119;CL:0000063!3.76e-12!578;CL:0000183!4.80e-11!59;CL:0000187!3.47e-09!54;CL:0000057!6.32e-09!75;CL:0000066!7.40e-09!254;CL:0000680!1.10e-08!57;CL:0000056!1.10e-08!57;CL:0000355!1.10e-08!57;CL:0000192!2.15e-08!42;CL:0000514!2.15e-08!42;CL:0000393!7.37e-08!60;CL:0000211!7.37e-08!60;CL:1000449!7.78e-07!16 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.21e-13,250;CL:0000222,5.65e-13,121;CL:0000187,1.87e-09,55;CL:0000057,4.72e-09,76;CL:0000680,6.02e-09,58;CL:0000056,6.02e-09,58;CL:0000355,6.02e-09,58;CL:0000066,1.14e-08,253;CL:0000192,1.15e-08,43;CL:0000514,1.15e-08,43;CL:0000393,4.14e-08,61;CL:0000211,4.14e-08,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.25e-10!79;UBERON:0007798!5.25e-10!79;UBERON:0003914!1.07e-09!118;UBERON:0000055!6.79e-09!69;UBERON:0005256!1.50e-08!143;UBERON:0001637!4.59e-08!42;UBERON:0003509!4.59e-08!42;UBERON:0004572!4.59e-08!42;UBERON:0000486!1.02e-07!82;UBERON:0004290!1.36e-07!70;UBERON:0000490!1.88e-07!138;UBERON:0004872!2.20e-07!84;UBERON:0001981!3.30e-07!60;UBERON:0007500!3.30e-07!60;UBERON:0004537!3.30e-07!60;UBERON:0006965!3.30e-07!60;UBERON:0001134!4.07e-07!61;UBERON:0002036!4.07e-07!61;UBERON:0003082!4.07e-07!61;UBERON:0000353!7.62e-07!17;UBERON:0004211!7.78e-07!16;UBERON:0001285!7.78e-07!16;UBERON:0007684!7.78e-07!16;UBERON:0003220!7.78e-07!16;UBERON:0004208!7.78e-07!16 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,7.06e-10,78;UBERON:0007798,7.06e-10,78;UBERON:0007503,8.77e-10,78;UBERON:0003914,1.82e-09,117;UBERON:0003104,4.66e-09,160;UBERON:0009142,4.66e-09,160;UBERON:0000055,9.08e-09,68;UBERON:0000490,3.19e-08,148;UBERON:0001637,4.59e-08,42;UBERON:0003509,4.59e-08,42;UBERON:0004572,4.59e-08,42;UBERON:0000486,5.98e-08,83;UBERON:0002329,7.88e-08,71;UBERON:0003059,7.88e-08,71;UBERON:0007282,7.88e-08,71;UBERON:0004290,7.88e-08,71;UBERON:0009618,7.88e-08,71;UBERON:0007524,1.09e-07,73;UBERON:0002100,1.31e-07,199;UBERON:0005256,1.42e-07,122;UBERON:0001134,2.34e-07,62;UBERON:0002036,2.34e-07,62;UBERON:0003082,2.34e-07,62;UBERON:0003077,2.37e-07,72;UBERON:0007285,2.37e-07,72;UBERON:0004872,2.90e-07,83;UBERON:0007500,4.37e-07,59;UBERON:0001981,4.37e-07,59;UBERON:0004537,4.37e-07,59;UBERON:0006965,4.37e-07,59 | |||
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| ||
|short_description=p1@PRKCSH | |||
}} | }} |
Latest revision as of 05:21, 25 September 2015
Short description: | p1@PRKCSH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRKCSH_5end |
Coexpression cluster: | C345_Mesenchymal_Fibroblast_Alveolar_Renal_Pericytes_Hepatic_Smooth |
Association with transcript: | 0bp_to_uc002mrv.1_5end |
EntrezGene: | PRKCSH |
HGNC: | 9411 |
UniProt: | A2VCQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.21e-13 | 250 |
mesodermal cell | 5.65e-13 | 121 |
muscle cell | 1.87e-09 | 55 |
fibroblast | 4.72e-09 | 76 |
muscle precursor cell | 6.02e-09 | 58 |
myoblast | 6.02e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.02e-09 | 58 |
epithelial cell | 1.14e-08 | 253 |
smooth muscle cell | 1.15e-08 | 43 |
smooth muscle myoblast | 1.15e-08 | 43 |
electrically responsive cell | 4.14e-08 | 61 |
electrically active cell | 4.14e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
vasculature | 7.06e-10 | 78 |
vascular system | 7.06e-10 | 78 |
epithelial vesicle | 8.77e-10 | 78 |
epithelial tube | 1.82e-09 | 117 |
mesenchyme | 4.66e-09 | 160 |
entire embryonic mesenchyme | 4.66e-09 | 160 |
vessel | 9.08e-09 | 68 |
unilaminar epithelium | 3.19e-08 | 148 |
artery | 4.59e-08 | 42 |
arterial blood vessel | 4.59e-08 | 42 |
arterial system | 4.59e-08 | 42 |
multilaminar epithelium | 5.98e-08 | 83 |
somite | 7.88e-08 | 71 |
presomitic mesoderm | 7.88e-08 | 71 |
presumptive segmental plate | 7.88e-08 | 71 |
dermomyotome | 7.88e-08 | 71 |
trunk paraxial mesoderm | 7.88e-08 | 71 |
dense mesenchyme tissue | 1.09e-07 | 73 |
trunk | 1.31e-07 | 199 |
trunk mesenchyme | 1.42e-07 | 122 |
skeletal muscle tissue | 2.34e-07 | 62 |
striated muscle tissue | 2.34e-07 | 62 |
myotome | 2.34e-07 | 62 |
paraxial mesoderm | 2.37e-07 | 72 |
presumptive paraxial mesoderm | 2.37e-07 | 72 |
splanchnic layer of lateral plate mesoderm | 2.90e-07 | 83 |
epithelial tube open at both ends | 4.37e-07 | 59 |
blood vessel | 4.37e-07 | 59 |
blood vasculature | 4.37e-07 | 59 |
vascular cord | 4.37e-07 | 59 |