FFCP PHASE1:Hg19::chr1:22109626..22109674,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:22109626..22109674,-
|short_description=p1@USP48
|description=CAGE_peak_1_at_USP48_5end
|association_with_transcript=13bp_to_ENST00000400301,NM_001032730,N...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84196 | |EntrezGene=84196 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18533 | |HGNC=18533 | ||
|TSSclassifier=strong | |||
|UniProt=Q86UV5 | |UniProt=Q86UV5 | ||
|association_with_transcript=13bp_to_ENST00000400301,NM_001032730,NM_032236,uc001bfb.2,uc001bfc.2,uc001bfe.1,uc001bff.2,uc009vqc.2,uc010odq.1_5end | |||
|cluster_id=chr1:22109626..22109674,- | |||
|description=CAGE_peak_1_at_USP48_5end | |||
|id=chr1:22109626..22109674,- | |||
|ontology_enrichment_celltype=CL:0000037!1.10e-16!172;CL:0000566!1.10e-16!172;CL:0000988!9.80e-15!182;CL:0002032!1.85e-14!165;CL:0000837!1.85e-14!165;CL:0000838!8.49e-12!52;CL:0000542!8.66e-12!53;CL:0000051!8.66e-12!53;CL:0000738!1.34e-09!140;CL:0000134!6.78e-09!358;CL:0002320!8.96e-09!365;CL:0000219!4.13e-08!390;CL:0000945!3.11e-07!24;CL:0000826!3.11e-07!24;CL:0000791!7.80e-07!18;CL:0000789!7.80e-07!18;CL:0002420!7.80e-07!18;CL:0002419!7.80e-07!18;CL:0000790!7.80e-07!18;CL:0002031!9.23e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.49e-07;24!CL:0000542;4.50e-07;53!CL:0000791;8.83e-07;18!CL:0000789;8.83e-07;18!CL:0002419;8.83e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.72e-17,168;CL:0000988,9.08e-16,177;CL:0002032,3.32e-15,161;CL:0000837,3.32e-15,161;CL:0000838,8.49e-12,52;CL:0000542,8.66e-12,53;CL:0000051,8.66e-12,53;CL:0000738,3.24e-10,136;CL:0000134,2.04e-09,354;CL:0002320,2.74e-09,361;CL:0000219,1.37e-08,386;CL:0002031,2.84e-07,120;CL:0000945,3.11e-07,24;CL:0000826,3.11e-07,24;CL:0000791,7.80e-07,18;CL:0000789,7.80e-07,18;CL:0002420,7.80e-07,18;CL:0002419,7.80e-07,18;CL:0000790,7.80e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;4.50e-07;53!CL:0000790;8.83e-07;18 | |||
|ontology_enrichment_disease=DOID:8692!4.60e-08!31;DOID:2531!1.27e-07!51;DOID:0060083!1.27e-07!51;DOID:1240!2.06e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;9.91e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,4.60e-08,31;DOID:2531,1.27e-07,51;DOID:0060083,1.27e-07,51;DOID:1240,2.06e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.05e-11!115;UBERON:0001049!1.71e-09!57;UBERON:0005068!1.71e-09!57;UBERON:0006241!1.71e-09!57;UBERON:0007135!1.71e-09!57;UBERON:0002384!2.55e-09!375;UBERON:0003080!6.62e-09!42;UBERON:0002780!7.28e-09!41;UBERON:0001890!7.28e-09!41;UBERON:0006240!7.28e-09!41;UBERON:0002616!9.09e-09!59;UBERON:0000955!1.78e-08!69;UBERON:0006238!1.78e-08!69;UBERON:0001893!2.18e-08!34;UBERON:0002791!5.07e-08!33;UBERON:0002020!7.15e-08!34;UBERON:0003528!7.15e-08!34;UBERON:0001017!1.35e-07!82;UBERON:0001869!2.01e-07!32;UBERON:0005743!6.43e-07!86;UBERON:0000073!8.86e-07!94;UBERON:0001016!8.86e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.63e-07;34!UBERON:0003528;6.67e-07;34!UBERON:0002020;6.67e-07;34!UBERON:0002791;9.33e-07;32!UBERON:0002780;9.38e-07;41!UBERON:0001890;9.38e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.39e-11,114;UBERON:0002384,7.57e-10,371;UBERON:0001049,1.95e-09,56;UBERON:0005068,1.95e-09,56;UBERON:0006241,1.95e-09,56;UBERON:0007135,1.95e-09,56;UBERON:0000073,3.43e-09,53;UBERON:0002616,3.43e-09,53;UBERON:0002780,7.28e-09,41;UBERON:0001890,7.28e-09,41;UBERON:0003080,7.28e-09,41;UBERON:0006240,7.28e-09,41;UBERON:0000955,2.08e-08,68;UBERON:0006238,2.08e-08,68;UBERON:0001893,2.18e-08,34;UBERON:0003528,7.15e-08,34;UBERON:0002020,7.15e-08,34;UBERON:0002791,1.55e-07,32;UBERON:0001017,1.59e-07,81;UBERON:0001869,2.01e-07,32;UBERON:0001016,2.50e-07,89 | |||
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| ||
|short_description=p1@USP48 | |||
}} | }} |
Latest revision as of 07:14, 25 September 2015
Short description: | p1@USP48 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USP48_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000400301, NM_001032730, NM_032236, uc001bfb.2, uc001bfc.2, uc001bfe.1, uc001bff.2, uc009vqc.2, uc010odq.1_5end |
EntrezGene: | USP48 |
HGNC: | 18533 |
UniProt: | Q86UV5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.72e-17 | 168 |
hematopoietic cell | 9.08e-16 | 177 |
hematopoietic oligopotent progenitor cell | 3.32e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.32e-15 | 161 |
lymphoid lineage restricted progenitor cell | 8.49e-12 | 52 |
lymphocyte | 8.66e-12 | 53 |
common lymphoid progenitor | 8.66e-12 | 53 |
leukocyte | 3.24e-10 | 136 |
mesenchymal cell | 2.04e-09 | 354 |
connective tissue cell | 2.74e-09 | 361 |
motile cell | 1.37e-08 | 386 |
hematopoietic lineage restricted progenitor cell | 2.84e-07 | 120 |
lymphocyte of B lineage | 3.11e-07 | 24 |
pro-B cell | 3.11e-07 | 24 |
mature alpha-beta T cell | 7.80e-07 | 18 |
alpha-beta T cell | 7.80e-07 | 18 |
immature T cell | 7.80e-07 | 18 |
mature T cell | 7.80e-07 | 18 |
immature alpha-beta T cell | 7.80e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.39e-11 | 114 |
connective tissue | 7.57e-10 | 371 |
neural tube | 1.95e-09 | 56 |
neural rod | 1.95e-09 | 56 |
future spinal cord | 1.95e-09 | 56 |
neural keel | 1.95e-09 | 56 |
regional part of nervous system | 3.43e-09 | 53 |
regional part of brain | 3.43e-09 | 53 |
regional part of forebrain | 7.28e-09 | 41 |
forebrain | 7.28e-09 | 41 |
anterior neural tube | 7.28e-09 | 41 |
future forebrain | 7.28e-09 | 41 |
brain | 2.08e-08 | 68 |
future brain | 2.08e-08 | 68 |
telencephalon | 2.18e-08 | 34 |
brain grey matter | 7.15e-08 | 34 |
gray matter | 7.15e-08 | 34 |
regional part of telencephalon | 1.55e-07 | 32 |
central nervous system | 1.59e-07 | 81 |
cerebral hemisphere | 2.01e-07 | 32 |
nervous system | 2.50e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 4.60e-08 | 31 |
hematologic cancer | 1.27e-07 | 51 |
immune system cancer | 1.27e-07 | 51 |
leukemia | 2.06e-07 | 39 |