FFCP PHASE1:Mm9::chr10:128328919..128328934,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:128328919..128328934,-
|short_description=p2@Gdf11
|description=CAGE_peak_2_at_Gdf11_5end
|association_with_transcript=-145bp_to_ENSMUST00000026408,NM_010...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=14561 | |EntrezGene=14561 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1233 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z1W4 | |UniProt=Q9Z1W4 | ||
|association_with_transcript=-145bp_to_ENSMUST00000026408,NM_010272,uc007hot.1_5end | |||
|cluster_id=chr10:128328919..128328934,- | |||
|description=CAGE_peak_2_at_Gdf11_5end | |||
|id=chr10:128328919..128328934,- | |||
|ontology_enrichment_celltype=CL:0000221!2.56e-19!44;CL:0000133!2.56e-19!44;CL:0002319!1.14e-18!43;CL:0000055!6.81e-18!50;CL:0000393!7.21e-16!39;CL:0000211!7.21e-16!39;CL:0000540!1.12e-15!33;CL:0000047!1.12e-15!33;CL:0000031!1.12e-15!33;CL:0000404!1.12e-15!33;CL:0000117!1.15e-10!23;CL:0000337!1.15e-10!23;CL:0002321!1.11e-08!70;CL:0000220!1.11e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.58e-22,44;CL:0000133,1.58e-22,44;CL:0002319,8.92e-22,43;CL:0000540,7.03e-18,33;CL:0000047,7.03e-18,33;CL:0000031,7.03e-18,33;CL:0000404,7.03e-18,33;CL:0000393,7.50e-18,39;CL:0000211,7.50e-18,39;CL:0002321,3.11e-13,70;CL:0000117,4.39e-12,23;CL:0000337,4.39e-12,23;CL:0000723,5.36e-07,91;CL:0000048,5.36e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.80e-27!75;UBERON:0001016!3.80e-27!75;UBERON:0001017!3.66e-26!73;UBERON:0005743!3.66e-26!73;UBERON:0004121!3.61e-21!102;UBERON:0000924!3.61e-21!102;UBERON:0006601!3.61e-21!102;UBERON:0000033!1.56e-18!63;UBERON:0002346!8.60e-18!71;UBERON:0003075!8.60e-18!71;UBERON:0007284!8.60e-18!71;UBERON:0000153!2.86e-17!94;UBERON:0001049!4.97e-17!52;UBERON:0005068!4.97e-17!52;UBERON:0006241!4.97e-17!52;UBERON:0007135!4.97e-17!52;UBERON:0007811!8.10e-17!86;UBERON:0000955!1.96e-16!50;UBERON:0006238!1.96e-16!50;UBERON:0003056!2.88e-16!49;UBERON:0002616!8.64e-16!49;UBERON:0003080!1.20e-13!40;UBERON:0002780!3.00e-13!39;UBERON:0001890!3.00e-13!39;UBERON:0006240!3.00e-13!39;UBERON:0002020!9.45e-11!34;UBERON:0002791!4.48e-09!29;UBERON:0003528!4.48e-09!29;UBERON:0001893!4.48e-09!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.54e-30,75;UBERON:0001017,7.46e-29,73;UBERON:0004121,6.25e-27,95;UBERON:0000924,6.25e-27,95;UBERON:0006601,6.25e-27,95;UBERON:0002346,1.14e-22,64;UBERON:0003075,1.14e-22,64;UBERON:0007284,1.14e-22,64;UBERON:0010371,5.59e-19,73;UBERON:0000073,9.62e-19,54;UBERON:0001049,4.98e-18,52;UBERON:0005068,4.98e-18,52;UBERON:0006241,4.98e-18,52;UBERON:0007135,4.98e-18,52;UBERON:0003056,2.51e-17,49;UBERON:0000955,4.83e-16,47;UBERON:0006238,4.83e-16,47;UBERON:0002616,2.49e-15,46;UBERON:0010314,8.31e-15,92;UBERON:0003080,2.28e-14,40;UBERON:0002780,6.46e-14,39;UBERON:0001890,6.46e-14,39;UBERON:0006240,6.46e-14,39;UBERON:0002020,4.26e-11,34;UBERON:0003528,3.42e-09,29;UBERON:0002791,3.42e-09,29;UBERON:0001893,3.42e-09,29;UBERON:0000010,2.31e-07,11 | |||
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|phase1_expression=3.36312578920067,0,0,0,0,0.33575854382378,0.233612640595526,1.16210991097419,1.267098499365,2.34064526321993,0.34243593645101,1.03703806693937,0.684802919724823,1.92324885321794,1.33243904726265,0.809901069559304,0,2.36596624018678,3.29074640653773,1.27316895539409,1.36069264241712,1.09220046320974,0.522399578277871,0.319984845586813,0.22940928106717,0.57423196411502,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,1.76255545165808,3.85232338634155,3.48738829107195,2.34717403304412,2.39827672018491,9.00713349211335,7.19390626574849,1.67983705950435,0,2.18117387875057,2.17608642603403,1.34437519656986,1.02903774414379,0.573066879877513,1.54701627683233,4.85559506063035,1.05798195854407,6.97214543856797,1.69422266034566,0.889294796111139,1.7997994345628,0,0,13.7816050838466,24.2057532352579,4.25127410464758,2.56511282830212,2.52389953621658,1.71390590642282,1.76694832761291,4.77714116938321,5.65488279007595,6.43453150627015,1.10115880999389,7.40586560894089,6.75868746327471,5.67111037239834,6.77008562657831,9.37644067002168,2.79182999001381,3.37657566019008,6.57032465440283,3.53554302568401,3.84403538157578,4.65998614563251,2.87759534666099,3.6274348851257,0.289864488701678,0,0,0,0,0,0.561777680527007,1.70430322578058,2.59786004602869,2.47337702157238,6.4787973097273,11.5493829672886,15.2883143823987,21.3320010945999,0,0.253359865475099,0,0.22836775943812,0.258937883647172,0.29688427812965,1.38788261412909,0.608930956624282,0,0.60289056221049,0.352766121407114,0.753999547978053,0.247194967734374,0.144599356919912,0,2.10296904931632,3.5334642953663,2.90925151881133,0,0.585561594023094,1.67557365450764,0.255457055208591,0.11981512450592,0,0.127070227073065,3.14560342750128,1.83000241127451,5.27748278874031,1.21677024134594,2.55715457330331,4.57133698031032,2.92034273521964,1.01839363850316,1.61729061793121,0.758168275301024,0.420883711772948,3.6433724029557,5.51765050640335,3.96136685571768,2.41127708537144,3.87808045162569,3.20284300712124,5.34099829990454,1.29351685369508,4.52692785158969,2.45837904218165,2.46331573829528,0.876782929710299,1.39023624612799,1.39300866608867,0.61734640922383,1.19420560091096,0,0,0,1.86413195281952,1.40715635988658,1.62055855314913,1.65721314909647,1.77087808572663,0.617068451549513,0.930135779001631,0.536546802799238,0.700592054203017,0.822799249567402,0.656669856316381,0.729619285912702,0.438599962275997,0.439100230582101,1.07365135008297,1.26173969138476,2.16099685996497,0.660837565967596,0,1.49301775374664,1.39342003116263,0.902072229254653,0.201683524623343,1.11189021922435,0.570676878337677,0,0.329397909448022,0.754005626400808,0.795825888164603,0.38992817423824,0,0.216138049874694,0,1.70701110857774,1.94222471436539,1.1270773567308,3.46207257337034,1.55161989734101,2.10407459670956,1.58091342810643,1.18088118383682,0.627994911365499,1.1105744752962,0,0.500535317148282,0.589676985339609,0.449724224769707,0,0,0,0,0,0,2.87536413054709,0,0,0,0,0.482443521363367,0.369506380333209,1.70542270593436,1.46668478797823,0.848725428875941,0.469380496577004,1.17254380209271,1.6663054862021,1.36593553500459,0.472905432318573,0.664394068946325,1.11618338060241,0.491589944147214,0.518054945597687,0.289298117163023,0,0,0.491764273019036,0.275936746304732,3.05046120976805,3.5163505977661,1.63934945376675,3.7870639080656,2.83957397474631,3.12350995437311,3.44677436372478,5.01834475700359,6.90675889655422,6.79383673893198,4.85772842009873,6.42962887404886,3.95287777946523,7.06906896127976,1.13552068166615,1.24645922567079,1.46598263418218,2.63952196756057,0,0.728341908464944,0,0.754420319023592,0.590603785761546,0.307435147943927,0.516856586336442,0,0.356497378384721,0,1.05418608574999,0,3.06395645178409,3.42116078659489,3.10460841078611,5.5727629108214,5.67488747655275,4.10248280484762,3.45552943264454,1.8267896946876,0.23467170806371,0,0.220528398054962,0.16488625294148,0.484393280087717,0.422190474497091,0.477489376012546,0,0,4.63563255026274,0.512612642393558,0.412773735926445,0.370389054739423,0,0.410082683163076,0.686334519619568,0,0.139951452323658,0.138199973804424,0,2.21435195506795,1.01659733563424,1.29606408986162,1.04544148007234,0.655087691238533,0.944050424693745,0.826534557253359,0.785267825952089,0.648074866458964,0,0,1.19613236835183,0.827292452285488,0.972255941720238,2.45403664607689,0.675824501963113,0.469428954583016,0.651021924219751,0.524296722128554,0.724752362478018,0,1.26404448251271,0.202725215290164,0.718976700153791,0.389762468933385,0.537080087002444,1.58945083825012,1.08175904567972,0.443068581523732,1.11063094942962,0.457240839929999,0.806609481094724,1.46186821109629,0.769694733122636,0.935015217452552,0.226730383615211,0.221985953374065,0.0897138566094757,0,0.19318959403219,0.750729901804728,0.73260649706906,0.428736758158132,1.00314420807073,2.25900737046827,0.920650473014354,1.14579102687879,0.515559547031063,1.37016503954128,1.5107877947794,4.05013500139084,2.70192721934532,0.906284817968409,3.10656187051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| ||
|short_description=p2@Gdf11 | |||
}} | }} |
Latest revision as of 19:28, 25 September 2015
Short description: | p2@Gdf11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gdf11_5end |
Coexpression cluster: | MCL_coexpression_mm9:1233 |
Association with transcript: | -145bp_to_ENSMUST00000026408, NM_010272, uc007hot.1_5end |
EntrezGene: | Gdf11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.58e-22 | 44 |
neurectodermal cell | 1.58e-22 | 44 |
neural cell | 8.92e-22 | 43 |
neuron | 7.03e-18 | 33 |
neuronal stem cell | 7.03e-18 | 33 |
neuroblast | 7.03e-18 | 33 |
electrically signaling cell | 7.03e-18 | 33 |
electrically responsive cell | 7.50e-18 | 39 |
electrically active cell | 7.50e-18 | 39 |
embryonic cell | 3.11e-13 | 70 |
CNS neuron (sensu Vertebrata) | 4.39e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.39e-12 | 23 |
somatic stem cell | 5.36e-07 | 91 |
multi fate stem cell | 5.36e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.54e-30 | 75 |
central nervous system | 7.46e-29 | 73 |
ectoderm-derived structure | 6.25e-27 | 95 |
ectoderm | 6.25e-27 | 95 |
presumptive ectoderm | 6.25e-27 | 95 |
neurectoderm | 1.14e-22 | 64 |
neural plate | 1.14e-22 | 64 |
presumptive neural plate | 1.14e-22 | 64 |
ecto-epithelium | 5.59e-19 | 73 |
regional part of nervous system | 9.62e-19 | 54 |
neural tube | 4.98e-18 | 52 |
neural rod | 4.98e-18 | 52 |
future spinal cord | 4.98e-18 | 52 |
neural keel | 4.98e-18 | 52 |
pre-chordal neural plate | 2.51e-17 | 49 |
brain | 4.83e-16 | 47 |
future brain | 4.83e-16 | 47 |
regional part of brain | 2.49e-15 | 46 |
structure with developmental contribution from neural crest | 8.31e-15 | 92 |
anterior neural tube | 2.28e-14 | 40 |
regional part of forebrain | 6.46e-14 | 39 |
forebrain | 6.46e-14 | 39 |
future forebrain | 6.46e-14 | 39 |
gray matter | 4.26e-11 | 34 |
brain grey matter | 3.42e-09 | 29 |
regional part of telencephalon | 3.42e-09 | 29 |
telencephalon | 3.42e-09 | 29 |
peripheral nervous system | 2.31e-07 | 11 |