FFCP PHASE1:Mm9::chr17:15841927..15841958,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12648 | |EntrezGene=12648 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=P40201,Q8C7Q2,Q9CRD9,Q3UQG5 | |UniProt=P40201,Q8C7Q2,Q9CRD9,Q3UQG5 | ||
|association_with_transcript=0bp_to_ENSMUST00000024627,ENSMUST00000173311,NM_007690,uc008aot.2,uc008aou.2,uc012akw.1,uc012akx.1_5end | |association_with_transcript=0bp_to_ENSMUST00000024627,ENSMUST00000173311,NM_007690,uc008aot.2,uc008aou.2,uc012akw.1,uc012akx.1_5end | ||
|cluster_id=chr17:15841927..15841958,+ | |||
|description=CAGE_peak_1_at_Chd1_5end | |description=CAGE_peak_1_at_Chd1_5end | ||
|id=chr17:15841927..15841958,+ | |id=chr17:15841927..15841958,+ | ||
|ontology_enrichment_celltype=CL:0000791!3.87e-07!9;CL:0000789!3.87e-07!9;CL:0002420!3.87e-07!9;CL:0002419!3.87e-07!9;CL:0000790!3.87e-07!9;CL:0000838!8.25e-07!12;CL:0000542!8.30e-07!13;CL:0000051!8.30e-07!13 | |ontology_enrichment_celltype=CL:0000791!3.87e-07!9;CL:0000789!3.87e-07!9;CL:0002420!3.87e-07!9;CL:0002419!3.87e-07!9;CL:0000790!3.87e-07!9;CL:0000838!8.25e-07!12;CL:0000542!8.30e-07!13;CL:0000051!8.30e-07!13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.87e-07,9;CL:0000789,3.87e-07,9;CL:0002420,3.87e-07,9;CL:0002419,3.87e-07,9;CL:0000790,3.87e-07,9;CL:0000838,8.25e-07,12;CL:0000542,8.30e-07,13;CL:0000051,8.30e-07,13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!7.97e-11!23;UBERON:0000974!7.97e-11!23;UBERON:0004807!7.97e-11!23;UBERON:0005058!7.97e-11!23;UBERON:0003351!7.97e-11!23;UBERON:0009113!7.97e-11!23;UBERON:0003295!7.97e-11!23;UBERON:0009722!7.97e-11!23;UBERON:0005562!7.97e-11!23;UBERON:0007690!7.97e-11!23;UBERON:0000065!1.44e-10!41;UBERON:0006562!1.51e-10!24;UBERON:0001557!1.51e-10!24;UBERON:0001042!1.51e-10!24;UBERON:0008814!1.51e-10!24;UBERON:0009145!1.51e-10!24;UBERON:0003408!2.04e-10!24;UBERON:0001004!2.42e-10!42;UBERON:0005911!8.99e-10!69;UBERON:0004177!2.22e-09!29;UBERON:0000072!5.40e-09!27;UBERON:0003929!9.52e-08!55;UBERON:0000490!7.93e-07!66;UBERON:0002193!9.76e-07!48 | |ontology_enrichment_uberon=UBERON:0002370!7.97e-11!23;UBERON:0000974!7.97e-11!23;UBERON:0004807!7.97e-11!23;UBERON:0005058!7.97e-11!23;UBERON:0003351!7.97e-11!23;UBERON:0009113!7.97e-11!23;UBERON:0003295!7.97e-11!23;UBERON:0009722!7.97e-11!23;UBERON:0005562!7.97e-11!23;UBERON:0007690!7.97e-11!23;UBERON:0000065!1.44e-10!41;UBERON:0006562!1.51e-10!24;UBERON:0001557!1.51e-10!24;UBERON:0001042!1.51e-10!24;UBERON:0008814!1.51e-10!24;UBERON:0009145!1.51e-10!24;UBERON:0003408!2.04e-10!24;UBERON:0001004!2.42e-10!42;UBERON:0005911!8.99e-10!69;UBERON:0004177!2.22e-09!29;UBERON:0000072!5.40e-09!27;UBERON:0003929!9.52e-08!55;UBERON:0000490!7.93e-07!66;UBERON:0002193!9.76e-07!48 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000077,7.59e-11,35;UBERON:0002370,7.97e-11,23;UBERON:0000974,7.97e-11,23;UBERON:0004807,7.97e-11,23;UBERON:0005058,7.97e-11,23;UBERON:0003351,7.97e-11,23;UBERON:0009113,7.97e-11,23;UBERON:0003295,7.97e-11,23;UBERON:0009722,7.97e-11,23;UBERON:0005562,7.97e-11,23;UBERON:0007690,7.97e-11,23;UBERON:0000065,1.44e-10,41;UBERON:0006562,1.51e-10,24;UBERON:0001557,1.51e-10,24;UBERON:0001042,1.51e-10,24;UBERON:0008814,1.51e-10,24;UBERON:0009145,1.51e-10,24;UBERON:0003408,2.04e-10,24;UBERON:0001004,2.42e-10,42;UBERON:0005911,8.99e-10,69;UBERON:0004177,2.22e-09,29;UBERON:0005057,2.22e-09,29;UBERON:0000072,5.40e-09,27;UBERON:0000153,6.51e-08,43;UBERON:0003929,9.52e-08,55;UBERON:0007811,1.35e-07,36;UBERON:0000490,7.93e-07,66;UBERON:0002193,9.76e-07,48;UBERON:0002405,9.76e-07,48 | |||
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|phase1_expression=15.0539916278506,36.9913932097723,34.1249429542152,45.3696316960245,36.064492556137,25.853407874431,20.5579123724063,33.5720640948098,117.558582996642,155.418845477804,49.1395568807199,51.213726075006,36.4657554753468,41.1750095393478,23.9839028507277,20.4500020063724,22.3859801001007,29.8111746263535,35.9239816047036,30.9804445812562,16.2432684188543,18.170244069762,16.7167865048919,19.679068003589,15.1410125504332,24.1177424928308,24.9841957772263,17.2376986148711,10.6413114895569,23.9428623271934,13.5255611499736,13.9706748161119,13.5314253268605,0,14.1537293678125,13.4650062740379,16.9460565697766,24.2748345827406,18.7520482685712,32.4584721263755,27.0586484494267,38.250547157673,29.1306211818692,18.8845226963366,18.5519784131712,19.2724089769766,10.1710874765245,5.23260375313072,3.73466510648602,7.77719596297134,5.31948402176378,10.062679505548,34.395434241836,49.3246256567714,36.6342241065286,12.6057123657614,12.8940047972441,12.8918023069361,9.3065571995415,7.93486468908049,8.23980824558033,7.45457970552091,5.33576877666684,9.89889689009539,7.9109309005358,7.104801149461,8.68840320503374,8.06858441175265,16.4866483570479,10.8004750665353,14.302097371894,7.14127461009509,5.07997644188711,12.9840247167851,11.3097655801519,10.1114066527102,8.8092704799511,11.7472351038373,9.67721159514334,9.62769900430415,8.59983849862651,7.8137005583514,7.53794097303729,7.31591393041184,9.32069311438542,12.374400589894,10.9626194215309,13.6071595452469,24.0809294799525,18.2127459857353,41.7404863730416,20.6501730475533,31.9586526842643,6.47643829965381,10.3964226791627,19.7131830322828,10.9546647702766,11.2484012901518,4.93593408745451,8.12681021373782,12.9575946194546,28.2318250311499,66.2493623237279,92.4386714099331,15.8038459938186,14.6948721975557,15.1657333504435,19.1828917928021,29.5189187357776,14.9926560455473,12.3174582003956,10.9607572192371,11.5307748628029,11.4549206819993,15.1689432205059,13.1949920896159,21.0115722574218,16.7735254027098,12.3845477272982,14.8825501951616,20.0965781798958,16.9706338597328,18.6391761218122,17.8596286177044,15.9179497178226,15.5828803677241,38.2210247173886,23.3962065087429,26.1764667770513,10.0359728401231,11.4375150704657,11.8115090986093,10.4294592115366,10.4843337505436,9.55825004973976,10.707923362472,19.0439610400091,15.5508713262616,13.6470289554184,15.7831391914855,19.9084277732937,13.7941262660084,18.3663372401456,14.9197769657358,21.5675702309709,18.8327168818729,17.9907311154679,18.1092359517311,21.9879352791499,26.0966390631591,20.4103304030181,14.9053098050751,17.2389294519871,20.89512999133,16.6683530490434,18.3111525473014,14.7464769335779,15.9555702411123,19.3231179589003,18.8484453007307,14.7751417788091,14.2249028554202,14.9149183418682,16.1346670032871,15.7352455145126,14.8821724640261,15.5598572811779,13.6615450569588,14.4812667923863,14.4467368389604,15.8084178614419,15.2047986922346,10.3188554186794,14.6284996448805,14.5100064509248,15.4356918568927,20.1555457620117,26.4450566663544,20.2623838008472,26.2427439202296,20.3610588888907,14.117846723634,15.7888411129858,10.4624094361908,15.1849299694244,12.6818195137488,12.3154252312132,9.15199771389294,15.5971269695296,13.4822911298133,16.4264917904768,14.7364542208232,10.6214024533726,20.7932292949706,14.6520056375005,15.8848035719345,16.0980564349129,21.5316967063278,18.4018323031589,16.679946721695,11.1469096767376,11.9695249004147,14.8226313543574,20.5219480030796,17.6903095601883,18.2138311031732,18.8659912891308,12.7823894668781,12.4766667372896,18.9879450717535,20.9154442539796,12.3552635934637,25.8782771749238,15.2577788544086,14.0416952901552,15.4073115547738,14.8899853223187,13.0259750768109,20.1380977281599,21.4125295300648,20.6965520081373,19.3509397783714,20.1833613528112,23.1158635269706,19.5195785526531,26.7333097565184,22.5418256071853,18.8244986201459,26.6289463658003,16.0586048421423,16.0597033135283,22.9992003144603,24.1266054302836,10.3342079925555,17.2117495556663,20.1433824802455,11.2385412991454,8.55645312123083,14.4262751931474,12.1186045058099,18.2994767261429,15.6175497718655,20.4652227846159,23.6579109973027,19.3834846451683,33.4030306330822,23.074209995469,21.3346776275258,23.7172666767914,14.7807805554031,17.458630480617,15.1355763117167,19.220661203722,18.806594018869,15.9294166007955,14.8096188054539,12.9999129494843,8.86443874852721,12.993283286754,16.6014979889721,15.5056975900933,17.0860852854428,14.2598951353889,14.5376908650475,16.8669773719998,16.5016869197099,11.9153862013826,21.0671480016633,8.92574918101006,18.2186479776853,15.6059405605201,16.7666688545946,15.3030589159972,7.61162372786498,23.7018425144347,22.8778636532926,20.5091410191115,35.4505443824182,29.2250612319589,22.3157822234177,20.4126708245363,24.6211349617592,21.8610627472388,11.6817940266621,21.8714727421251,17.1301100409475,17.2230910453832,12.2439497053049,20.7775226135958,16.0144721244566,32.2959016988325,37.3670377704167,39.9397924294785,9.54670618015114,21.5108475635172,17.0788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| ||
|short_description=p1@Chd1 | |short_description=p1@Chd1 | ||
}} | }} |
Latest revision as of 23:51, 25 September 2015
Short description: | p1@Chd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Chd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 0bp_to_ENSMUST00000024627, ENSMUST00000173311, NM_007690, uc008aot.2, uc008aou.2, uc012akw.1, uc012akx.1_5end |
EntrezGene: | Chd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.87e-07 | 9 |
alpha-beta T cell | 3.87e-07 | 9 |
immature T cell | 3.87e-07 | 9 |
mature T cell | 3.87e-07 | 9 |
immature alpha-beta T cell | 3.87e-07 | 9 |
lymphoid lineage restricted progenitor cell | 8.25e-07 | 12 |
lymphocyte | 8.30e-07 | 13 |
common lymphoid progenitor | 8.30e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
mixed endoderm/mesoderm-derived structure | 7.59e-11 | 35 |
thymus | 7.97e-11 | 23 |
neck | 7.97e-11 | 23 |
respiratory system epithelium | 7.97e-11 | 23 |
hemolymphoid system gland | 7.97e-11 | 23 |
pharyngeal epithelium | 7.97e-11 | 23 |
thymic region | 7.97e-11 | 23 |
pharyngeal gland | 7.97e-11 | 23 |
entire pharyngeal arch endoderm | 7.97e-11 | 23 |
thymus primordium | 7.97e-11 | 23 |
early pharyngeal endoderm | 7.97e-11 | 23 |
respiratory tract | 1.44e-10 | 41 |
pharynx | 1.51e-10 | 24 |
upper respiratory tract | 1.51e-10 | 24 |
chordate pharynx | 1.51e-10 | 24 |
pharyngeal arch system | 1.51e-10 | 24 |
pharyngeal region of foregut | 1.51e-10 | 24 |
gland of gut | 2.04e-10 | 24 |
respiratory system | 2.42e-10 | 42 |
endo-epithelium | 8.99e-10 | 69 |
hemopoietic organ | 2.22e-09 | 29 |
immune organ | 2.22e-09 | 29 |
segment of respiratory tract | 5.40e-09 | 27 |
anterior region of body | 6.51e-08 | 43 |
gut epithelium | 9.52e-08 | 55 |
craniocervical region | 1.35e-07 | 36 |
unilaminar epithelium | 7.93e-07 | 66 |
hemolymphoid system | 9.76e-07 | 48 |
immune system | 9.76e-07 | 48 |