FFCP PHASE1:Mm9::chr17:25933977..25934020,-: Difference between revisions
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{{FFCP|EntrezGene=70083|HGNC=|MCL_coexpression_id=558|UniProt=Q8C1Q4,A2RSN4,Q45G30|association_with_transcript=0bp_to_ENSMUST00000165838,NM_133719,uc008bbz.1,uc008bca.1,uc008bcb.1_5end|description=CAGE_peak_2_at_Metrn_5end|id=chr17:25933977..25934020,-|ontology_enrichment_celltype=CL:0000221!3.52e-22!44;CL:0000133!3.52e-22!44;CL:0002319!1.66e-21!43;CL:0000055!2.33e-17!50;CL:0000540!4.72e-15!33;CL:0000047!4.72e-15!33;CL:0000031!4.72e-15!33;CL:0000404!4.72e-15!33;CL:0000393!2.70e-12!39;CL:0000211!2.70e-12!39;CL:0000117!1.00e-08!23;CL:0000337!1.00e-08!23;CL:0002321!6.31e-08!70;CL:0000220!6.31e-08!70;CL:0000333!1.82e-07!10;CL:0000095!1.82e-07!10;CL:0000243!1.82e-07!10;CL:0000123!1.82e-07!10;CL:0000125!1.82e-07!10;CL:0000030!1.82e-07!10;CL:0000339!1.82e-07!10;CL:0000107!2.18e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,9.26e-31,44;CL:0000133,9.26e-31,44;CL:0002319,8.86e-30,43;CL:0000540,2.12e-20,33;CL:0000047,2.12e-20,33;CL:0000031,2.12e-20,33;CL:0000404,2.12e-20,33;CL:0000393,2.17e-16,39;CL:0000211,2.17e-16,39;CL:0002321,1.20e-14,70;CL:0000117,2.80e-11,23;CL:0000337,2.80e-11,23;CL:0000333,3.42e-10,10;CL:0000095,3.42e-10,10;CL:0000243,3.42e-10,10;CL:0000123,3.42e-10,10;CL:0000125,3.42e-10,10;CL:0000030,3.42e-10,10;CL:0000339,3.42e-10,10;CL:0000107,4.44e-10,9;CL:0002453,1.24e-08,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.99e-30!75;UBERON:0001016!1.99e-30!75;UBERON:0001017!4.40e-29!73;UBERON:0005743!4.40e-29!73;UBERON:0004121!8.63e-28!102;UBERON:0000924!8.63e-28!102;UBERON:0006601!8.63e-28!102;UBERON:0002346!1.10e-21!71;UBERON:0003075!1.10e-21!71;UBERON:0007284!1.10e-21!71;UBERON:0000033!5.05e-18!63;UBERON:0001049!4.20e-16!52;UBERON:0005068!4.20e-16!52;UBERON:0006241!4.20e-16!52;UBERON:0007135!4.20e-16!52;UBERON:0000955!1.41e-14!50;UBERON:0006238!1.41e-14!50;UBERON:0002616!4.24e-14!49;UBERON:0003056!1.28e-12!49;UBERON:0007811!3.13e-12!86;UBERON:0002020!4.05e-10!34;UBERON:0000153!5.32e-10!94;UBERON:0003080!6.59e-10!40;UBERON:0002780!1.75e-09!39;UBERON:0001890!1.75e-09!39;UBERON:0006240!1.75e-09!39;UBERON:0000010!1.86e-08!11;UBERON:0003076!1.08e-07!12;UBERON:0003057!1.08e-07!12;UBERON:0002791!1.62e-07!29;UBERON:0003528!1.62e-07!29;UBERON:0001893!1.62e-07!29;UBERON:0002410!2.18e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.23e-39,75;UBERON:0004121,1.68e-37,95;UBERON:0000924,1.68e-37,95;UBERON:0006601,1.68e-37,95;UBERON:0001017,2.60e-37,73;UBERON:0002346,5.33e-26,64;UBERON:0003075,5.33e-26,64;UBERON:0007284,5.33e-26,64;UBERON:0010371,3.68e-23,73;UBERON:0000073,2.33e-20,54;UBERON:0001049,4.23e-19,52;UBERON:0005068,4.23e-19,52;UBERON:0006241,4.23e-19,52;UBERON:0007135,4.23e-19,52;UBERON:0010314,1.17e-18,92;UBERON:0000955,3.72e-15,47;UBERON:0006238,3.72e-15,47;UBERON:0002616,1.62e-14,46;UBERON:0003056,3.42e-14,49;UBERON:0000010,1.24e-11,11;UBERON:0002020,6.32e-11,34;UBERON:0003080,1.15e-10,40;UBERON:0003076,1.61e-10,12;UBERON:0003057,1.61e-10,12;UBERON:0002780,4.23e-10,39;UBERON:0001890,4.23e-10,39;UBERON:0006240,4.23e-10,39;UBERON:0002410,4.44e-10,9;UBERON:0003528,1.70e-07,29;UBERON:0002791,1.70e-07,29;UBERON:0001893,1.70e-07,29|phase1_expression=4.96461426024861,0,0,0,0,0,0,0,0,0.468129052643987,0,0,0.342401459862411,0,0,0.404950534779652,1.39912375625629,0,0.137114433605739,0.42438965179803,0.425216450755349,1.29078236561151,0.522399578277871,0,0,0,0,0,0,0,0,1.90509202037889,1.23012957516914,0,0.577703239502549,0.498703936075477,0,0,0,0,0,0,0,0,0.405507724878058,0.183546752161682,2.34717403304412,13.5175596955877,21.7489320907127,16.7209713203884,6.7193482380174,24.4379359420452,0,0.725362142011344,0,0.514518872071894,1.14613375975503,0.515672092277442,2.63011399117477,1.5869729378161,1.26766280701236,7.79342423759004,2.66788438833342,1.7997994345628,0.988866362566974,0.7104801149461,37.1504137042822,83.3753722547773,0.622137673850866,1.08004750665353,0.420649922702764,14.8538511889978,7.50953039235486,1.95985278743926,1.72521847832825,1.83843757322004,4.40463523997555,4.08599481872601,1.84327839907492,2.37395317914349,1.28082701043374,1.04182674111352,9.77140496504833,4.50210088025344,3.66715794664344,8.2496003932627,7.54569908235246,6.33758115806022,4.31639301999149,9.14415877292105,0,0,0,0,0,0.448026887097336,0.140444420131752,0.170430322578058,0.519572009205738,0.35333957451034,11.2674735821344,0,0,0,0.432982082022428,0.506719730950197,1.01104889002957,0.34255163915718,0,0.29688427812965,3.64319186208885,1.52232739156071,2.53677046981664,1.50722640552623,0.117588707135705,0.879666139307728,0,0,0,0.485300549842228,0,0.969750506270444,0,4.09893115816166,9.84399522023239,0,0.718890747035522,0,0.508280908292259,3.2953940669061,2.28750301409313,1.38219787324151,1.56441888173049,1.27857728665165,1.66230435647648,1.94689515681309,0.203678727700633,0.373220911830279,0,0.210441855886474,6.50602214813519,7.12696523743766,4.14142898552303,4.52114453507145,3.81004395247436,3.45907044769094,5.80950692270319,0.517406741478031,0.86227197173136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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=70083 | |||
|HGNC= | |||
|MCL_coexpression_id=558 | |||
|TSSclassifier=NA | |||
|UniProt=Q8C1Q4,A2RSN4,Q45G30 | |||
|association_with_transcript=0bp_to_ENSMUST00000165838,NM_133719,uc008bbz.1,uc008bca.1,uc008bcb.1_5end | |||
|cluster_id=chr17:25933977..25934020,- | |||
|description=CAGE_peak_2_at_Metrn_5end | |||
|id=chr17:25933977..25934020,- | |||
|ontology_enrichment_celltype=CL:0000221!3.52e-22!44;CL:0000133!3.52e-22!44;CL:0002319!1.66e-21!43;CL:0000055!2.33e-17!50;CL:0000540!4.72e-15!33;CL:0000047!4.72e-15!33;CL:0000031!4.72e-15!33;CL:0000404!4.72e-15!33;CL:0000393!2.70e-12!39;CL:0000211!2.70e-12!39;CL:0000117!1.00e-08!23;CL:0000337!1.00e-08!23;CL:0002321!6.31e-08!70;CL:0000220!6.31e-08!70;CL:0000333!1.82e-07!10;CL:0000095!1.82e-07!10;CL:0000243!1.82e-07!10;CL:0000123!1.82e-07!10;CL:0000125!1.82e-07!10;CL:0000030!1.82e-07!10;CL:0000339!1.82e-07!10;CL:0000107!2.18e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.26e-31,44;CL:0000133,9.26e-31,44;CL:0002319,8.86e-30,43;CL:0000540,2.12e-20,33;CL:0000047,2.12e-20,33;CL:0000031,2.12e-20,33;CL:0000404,2.12e-20,33;CL:0000393,2.17e-16,39;CL:0000211,2.17e-16,39;CL:0002321,1.20e-14,70;CL:0000117,2.80e-11,23;CL:0000337,2.80e-11,23;CL:0000333,3.42e-10,10;CL:0000095,3.42e-10,10;CL:0000243,3.42e-10,10;CL:0000123,3.42e-10,10;CL:0000125,3.42e-10,10;CL:0000030,3.42e-10,10;CL:0000339,3.42e-10,10;CL:0000107,4.44e-10,9;CL:0002453,1.24e-08,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.99e-30!75;UBERON:0001016!1.99e-30!75;UBERON:0001017!4.40e-29!73;UBERON:0005743!4.40e-29!73;UBERON:0004121!8.63e-28!102;UBERON:0000924!8.63e-28!102;UBERON:0006601!8.63e-28!102;UBERON:0002346!1.10e-21!71;UBERON:0003075!1.10e-21!71;UBERON:0007284!1.10e-21!71;UBERON:0000033!5.05e-18!63;UBERON:0001049!4.20e-16!52;UBERON:0005068!4.20e-16!52;UBERON:0006241!4.20e-16!52;UBERON:0007135!4.20e-16!52;UBERON:0000955!1.41e-14!50;UBERON:0006238!1.41e-14!50;UBERON:0002616!4.24e-14!49;UBERON:0003056!1.28e-12!49;UBERON:0007811!3.13e-12!86;UBERON:0002020!4.05e-10!34;UBERON:0000153!5.32e-10!94;UBERON:0003080!6.59e-10!40;UBERON:0002780!1.75e-09!39;UBERON:0001890!1.75e-09!39;UBERON:0006240!1.75e-09!39;UBERON:0000010!1.86e-08!11;UBERON:0003076!1.08e-07!12;UBERON:0003057!1.08e-07!12;UBERON:0002791!1.62e-07!29;UBERON:0003528!1.62e-07!29;UBERON:0001893!1.62e-07!29;UBERON:0002410!2.18e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.23e-39,75;UBERON:0004121,1.68e-37,95;UBERON:0000924,1.68e-37,95;UBERON:0006601,1.68e-37,95;UBERON:0001017,2.60e-37,73;UBERON:0002346,5.33e-26,64;UBERON:0003075,5.33e-26,64;UBERON:0007284,5.33e-26,64;UBERON:0010371,3.68e-23,73;UBERON:0000073,2.33e-20,54;UBERON:0001049,4.23e-19,52;UBERON:0005068,4.23e-19,52;UBERON:0006241,4.23e-19,52;UBERON:0007135,4.23e-19,52;UBERON:0010314,1.17e-18,92;UBERON:0000955,3.72e-15,47;UBERON:0006238,3.72e-15,47;UBERON:0002616,1.62e-14,46;UBERON:0003056,3.42e-14,49;UBERON:0000010,1.24e-11,11;UBERON:0002020,6.32e-11,34;UBERON:0003080,1.15e-10,40;UBERON:0003076,1.61e-10,12;UBERON:0003057,1.61e-10,12;UBERON:0002780,4.23e-10,39;UBERON:0001890,4.23e-10,39;UBERON:0006240,4.23e-10,39;UBERON:0002410,4.44e-10,9;UBERON:0003528,1.70e-07,29;UBERON:0002791,1.70e-07,29;UBERON:0001893,1.70e-07,29 | |||
|phase1_expression=4.96461426024861,0,0,0,0,0,0,0,0,0.468129052643987,0,0,0.342401459862411,0,0,0.404950534779652,1.39912375625629,0,0.137114433605739,0.42438965179803,0.425216450755349,1.29078236561151,0.522399578277871,0,0,0,0,0,0,0,0,1.90509202037889,1.23012957516914,0,0.577703239502549,0.498703936075477,0,0,0,0,0,0,0,0,0.405507724878058,0.183546752161682,2.34717403304412,13.5175596955877,21.7489320907127,16.7209713203884,6.7193482380174,24.4379359420452,0,0.725362142011344,0,0.514518872071894,1.14613375975503,0.515672092277442,2.63011399117477,1.5869729378161,1.26766280701236,7.79342423759004,2.66788438833342,1.7997994345628,0.988866362566974,0.7104801149461,37.1504137042822,83.3753722547773,0.622137673850866,1.08004750665353,0.420649922702764,14.8538511889978,7.50953039235486,1.95985278743926,1.72521847832825,1.83843757322004,4.40463523997555,4.08599481872601,1.84327839907492,2.37395317914349,1.28082701043374,1.04182674111352,9.77140496504833,4.50210088025344,3.66715794664344,8.2496003932627,7.54569908235246,6.33758115806022,4.31639301999149,9.14415877292105,0,0,0,0,0,0.448026887097336,0.140444420131752,0.170430322578058,0.519572009205738,0.35333957451034,11.2674735821344,0,0,0,0.432982082022428,0.506719730950197,1.01104889002957,0.34255163915718,0,0.29688427812965,3.64319186208885,1.52232739156071,2.53677046981664,1.50722640552623,0.117588707135705,0.879666139307728,0,0,0,0.485300549842228,0,0.969750506270444,0,4.09893115816166,9.84399522023239,0,0.718890747035522,0,0.508280908292259,3.2953940669061,2.28750301409313,1.38219787324151,1.56441888173049,1.27857728665165,1.66230435647648,1.94689515681309,0.203678727700633,0.373220911830279,0,0.210441855886474,6.50602214813519,7.12696523743766,4.14142898552303,4.52114453507145,3.81004395247436,3.45907044769094,5.80950692270319,0.517406741478031,0.862271971731369,0.189106080167819,0,0.657587197282725,0,0,0.823128545631774,1.59227413454795,1.40442637462647,0.51469581422943,0.852490498186778,0.414251545071004,0.234526059981096,0,0.473489471170421,0.196764231747404,0,0.232533944750408,0.536546802799238,0.233530684734339,0.329119699826961,0.492502392237286,0.648550476366846,0.584799949701329,0.878200461164203,0,1.68231958851302,0.92614151141356,0,0,2.55945900642281,2.09013004674395,0.902072229254653,0.201683524623343,0.444756087689741,0.760902504450237,0,0.494096864172033,1.00534083520108,0.397912944082302,0.19496408711912,0,0.216138049874694,0.199141273254367,0.948339504765408,0.685491075658373,1.1270773567308,0.814605311381257,0.387904974335251,0.561086559122548,0.885311519739602,0.590440591918409,0,0.616985819609003,0,0,0.393117990226406,0,0.202860121388503,0,0,0,0.324270453550071,0.549122826376163,0,0.372140947668503,0,0.505157755894224,0.717589654087649,0.482443521363367,0.184753190166605,1.13694847062291,0.651859905768103,0.678980343100753,0.704070744865506,0.670025029767263,0.952174563544055,0.390267295715598,0.315270288212382,0.221464689648775,0.318909537314974,0,0.172684981865896,0.144649058581512,0,0,0.491764273019036,0,3.21101179975584,3.5163505977661,0.983609672260053,1.51482556322624,26.5026904309656,22.645447169205,17.6647186140895,20.3123478259669,16.2643032080148,21.5138163399513,17.8116708736954,15.1973046113882,13.4397844501818,3.53453448063988,0.141940085208269,0.534196811001766,0.325773918707152,0.164970122972535,0,1.21390318077491,0.302323556964751,0.754420319023592,0.295301892880773,0.614870295887855,0.775284879504663,0.727067458955011,0.712994756769443,0,0,0,0,2.88097750450096,2.58717367565509,3.21505552547388,1.41872186913819,1.24858172321449,2.79733335023606,0.913394847343798,0.23467170806371,0,0,0,0,0.120625849856312,0,0,0,3.70850604021019,0,0.619160603889667,0.370389054739423,0.376736914009382,0.27338845544205,0,0.509935289981566,0.419854356970974,0.276399947608848,0,2.53068794864908,1.01659733563424,0.86404272657441,0.418176592028937,0,0.269728692769641,0.578574190077352,0,0.259229946583586,0.621339313086926,0,1.04661582230785,2.48187735685646,1.36115831840833,2.0665571756437,1.01373675294467,0.234714477291508,0.2604087696879,0.838874755405687,0.483168241652012,0,1.26404448251271,1.21635129174099,0.410843828659309,0.77952493786677,0.895133478337407,0.596044064343795,0.600977247599844,0.886137163047463,0.302899349844443,0.914481679859998,0.504130925684203,0.584747284438515,0.769694733122636,0.584384510907845,0.226730383615211,0,0.179427713218951,0,0,0,0,0.214368379079066,0.501572104035363,0.564751842617067,0.920650473014354,1.14579102687879,2.23409137046794,2.74033007908257,2.2661816921691,2.02506750069542,0.45032120322422,1.81256963593682,0.51776031175182,2.28332164685189,1.19707462020309,0.682934423016537,0.243106717068294,0.628839487883947,1.10306105070008,0.666740183404846,0,0.64183841918363,1.51618327058278,0.50695859978048,0.754505365544305,0.655490552289177,0.576226371643824,0.631790158511746,0.476293691283074,1.15884325944855,0.77163688185482,1.23625770240992,0.441596760403192,1.37147700954166,0.70990322463735,0.476872379894642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| |||
|short_description=p2@Metrn | |||
}} |
Latest revision as of 02:31, 26 September 2015
Short description: | p2@Metrn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Metrn_5end |
Coexpression cluster: | MCL_coexpression_mm9:558 |
Association with transcript: | 0bp_to_ENSMUST00000165838, NM_133719, uc008bbz.1, uc008bca.1, uc008bcb.1_5end |
EntrezGene: | Metrn |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.26e-31 | 44 |
neurectodermal cell | 9.26e-31 | 44 |
neural cell | 8.86e-30 | 43 |
neuron | 2.12e-20 | 33 |
neuronal stem cell | 2.12e-20 | 33 |
neuroblast | 2.12e-20 | 33 |
electrically signaling cell | 2.12e-20 | 33 |
electrically responsive cell | 2.17e-16 | 39 |
electrically active cell | 2.17e-16 | 39 |
embryonic cell | 1.20e-14 | 70 |
CNS neuron (sensu Vertebrata) | 2.80e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.80e-11 | 23 |
migratory neural crest cell | 3.42e-10 | 10 |
neuron associated cell | 3.42e-10 | 10 |
glial cell (sensu Vertebrata) | 3.42e-10 | 10 |
neuron associated cell (sensu Vertebrata) | 3.42e-10 | 10 |
glial cell | 3.42e-10 | 10 |
glioblast | 3.42e-10 | 10 |
glioblast (sensu Vertebrata) | 3.42e-10 | 10 |
autonomic neuron | 4.44e-10 | 9 |
oligodendrocyte precursor cell | 1.24e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.23e-39 | 75 |
ectoderm-derived structure | 1.68e-37 | 95 |
ectoderm | 1.68e-37 | 95 |
presumptive ectoderm | 1.68e-37 | 95 |
central nervous system | 2.60e-37 | 73 |
neurectoderm | 5.33e-26 | 64 |
neural plate | 5.33e-26 | 64 |
presumptive neural plate | 5.33e-26 | 64 |
ecto-epithelium | 3.68e-23 | 73 |
regional part of nervous system | 2.33e-20 | 54 |
neural tube | 4.23e-19 | 52 |
neural rod | 4.23e-19 | 52 |
future spinal cord | 4.23e-19 | 52 |
neural keel | 4.23e-19 | 52 |
structure with developmental contribution from neural crest | 1.17e-18 | 92 |
brain | 3.72e-15 | 47 |
future brain | 3.72e-15 | 47 |
regional part of brain | 1.62e-14 | 46 |
pre-chordal neural plate | 3.42e-14 | 49 |
peripheral nervous system | 1.24e-11 | 11 |
gray matter | 6.32e-11 | 34 |
anterior neural tube | 1.15e-10 | 40 |
posterior neural tube | 1.61e-10 | 12 |
chordal neural plate | 1.61e-10 | 12 |
regional part of forebrain | 4.23e-10 | 39 |
forebrain | 4.23e-10 | 39 |
future forebrain | 4.23e-10 | 39 |
autonomic nervous system | 4.44e-10 | 9 |
brain grey matter | 1.70e-07 | 29 |
regional part of telencephalon | 1.70e-07 | 29 |
telencephalon | 1.70e-07 | 29 |