FFCP PHASE1:Mm9::chr14:70477113..70477173,+: Difference between revisions
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{{FFCP|EntrezGene=13655|HGNC=|MCL_coexpression_id=7|UniProt=P43300,Q496R7,Q3ZB14|association_with_transcript=-78bp_to_ENSMUST00000035908,NM_018781,uc007unb.1,uc007unc.1_5end|description=CAGE_peak_1_at_Egr3_5end|id=chr14:70477113..70477173,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000893,6.77e-07,6;CL:0002489,6.77e-07,6;CL:0000898,6.77e-07,6;CL:0000809,6.77e-07,6;CL:0000810,6.77e-07,6;CL:0000895,6.77e-07,6;CL:0000808,6.77e-07,6;CL:0000894,6.77e-07,6;CL:0000806,6.77e-07,6;CL:0000807,6.77e-07,6;CL:0000805,6.77e-07,6;CL:0002425,6.77e-07,6;CL:0002436,6.77e-07,6;CL:0002427,6.77e-07,6;CL:0002428,6.77e-07,6;CL:0002429,6.77e-07,6;CL:0002433,6.77e-07,6;CL:0002431,6.77e-07,6;CL:0002432,6.77e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!2.24e-09!17;UBERON:0002021!2.28e-08!10;UBERON:0000411!2.28e-08!10;UBERON:0001950!2.28e-08!10;UBERON:0000956!4.53e-08!21;UBERON:0001869!4.53e-08!21;UBERON:0000203!4.53e-08!21;UBERON:0000153!5.85e-07!94;UBERON:0002791!8.18e-07!29;UBERON:0003528!8.18e-07!29;UBERON:0001893!8.18e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.98e-15,10;UBERON:0000411,2.98e-15,10;UBERON:0001950,2.98e-15,10;UBERON:0002619,3.14e-15,17;UBERON:0000956,1.42e-13,21;UBERON:0001869,1.42e-13,21;UBERON:0000203,1.42e-13,21;UBERON:0003528,8.25e-12,29;UBERON:0002791,8.25e-12,29;UBERON:0001893,8.25e-12,29;UBERON:0002020,9.37e-12,34;UBERON:0002780,7.68e-10,39;UBERON:0001890,7.68e-10,39;UBERON:0006240,7.68e-10,39;UBERON:0003080,1.82e-09,40;UBERON:0000014,4.12e-09,5;UBERON:0001003,4.12e-09,5;UBERON:0002097,4.12e-09,5;UBERON:0002199,4.12e-09,5;UBERON:0007029,4.12e-09,5;UBERON:0007376,4.12e-09,5;UBERON:0002416,4.12e-09,5;UBERON:0007383,4.12e-09,5;UBERON:0000073,7.09e-09,54;UBERON:0010371,1.11e-08,73;UBERON:0000955,1.99e-08,47;UBERON:0006238,1.99e-08,47;UBERON:0004121,2.47e-08,95;UBERON:0000924,2.47e-08,95;UBERON:0006601,2.47e-08,95;UBERON:0001049,1.10e-07,52;UBERON:0005068,1.10e-07,52;UBERON:0006241,1.10e-07,52;UBERON:0007135,1.10e-07,52;UBERON:0002616,1.42e-07,46;UBERON:0003056,8.17e-07,49|phase1_expression=0.960893082628764,0,0,0,0,0,0,0.774739940649458,142.618975539638,202.231750742202,11.1291679346578,8.29630453551499,1.02720437958723,0.611942816932982,0.999329285446988,0.607425802169478,0,4.73193248037357,3.56497527374921,2.97072756258621,1.61582251287033,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.811015449756117,0.183546752161682,0,0,0,0.194429899074283,0.55994568650145,0,6.87908684836719,0,0.336093799142464,0,0,0.515672092277442,0.202316460859598,0,0,1.35537812827653,0,0,0.988866362566974,0,0,0.384218305321555,0,0.135005938331691,0,0.285650984403804,1.10434270475807,1.10241719293459,0.766763768145891,1.83843757322004,1.10115880999389,1.53224805702225,0.768032666281217,0.131886287730194,0,0,0,0,0.45839474333043,0,1.28134512719193,0,0.075726193333184,0.755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,1.69012103732017,0,0,0,0,0,0,0.5709193985953,3.10725460376606,0,0,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0.289198713839823,0,0.647067399789637,0.441683036920787,0.969750506270444,0,0,0,0,1.1981512450592,0.599902730993408,0.254140454146129,0.149790639404823,15.0975198930147,4.14659361972453,6.60532416730651,3.58001640262463,1.66230435647648,3.56930778749067,0.101839363850316,0.497627882440372,0,0,0,0,0,0.60281927134286,0.136072998302656,0,0.0937017245597288,0,0,0,0.175951124163949,0.43839146485515,0.278047249225598,1.39300866608867,3.08673204611915,0,0,0,0.284163499395593,0,0,0,0.473489471170421,0,0.308534225774757,0,0,0,0,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,8.41159794256509,1.13195073617213,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.325929952884052,0.169745085775188,0.704070744865506,0.670025029767263,0.238043640886014,0.390267295715598,0,0,0,0.163863314715738,0,0,0,0,0,0,0.481651769963376,0,0.655739781506702,0,0,0,0,1.91175038362042,0.222798674082394,0.566153061577665,0,0.584511715822624,0.395287777946524,12.8528526568723,0.141940085208269,0,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0.178368817602071,0.164549020602121,0,0,0,0,9.39851641766436,10.8181165886257,12.9672788595535,8.95292580023523,11.1615811826642,0.291480836629851,0.18542530201051,0.512612642393558,0,0.370389054739423,0.188368457004691,0.820165366326151,1.14389086603261,1.35982743995084,2.79902904647316,1.79659965945751,0,0,0,0,0,0,0.404593039154462,0.495920734352016,0.523511883968059,0,1.24267862617385,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0.205421914329655,0,0,0.198681354781265,0,0.147689527174577,0.302899349844443,0.0762068066549998,0.201652370273681,0.682205165178267,0.288635524920988,0.116876902181569,0.453460767230423,0.221985953374065,0,0,0,0,0,0,0,5.64751842617067,2.76195141904306,3.43737308063638,5.32744865265431,7.53590771747707,9.06472676867641,5.40018000185445,9.90706647093285,15.406841905463,8.80192529978094,0,0,0.170733605754134,0,0.628839487883947,0.735374033800057,0.666740183404846,1.44224540067226,0.962757628775446,1.76888048234658,1.2673964994512,0.565879024158229,0.561849044819294,0.960377286073039,1.03383844120104,0.952587382566147,0.927074607558844,0.192909220463705,0,1.32479028120958,0.685738504770831,0.177475806159338,0.476872379894642,1.0174249164263,0.564656282491984,0.592302255241736,0.548783918618318,0,0.271608227691724,0,0,1.28055827088233,0.409231043169689,0.464810523557898,1.73615949883027,1.74867404556562,1.63752125911786,3.22306581072447,0.956441660344217,2.42650561031467,0.231867835620421|short_description=p1@Egr3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13655 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=P43300,Q496R7,Q3ZB14 | |||
|association_with_transcript=-78bp_to_ENSMUST00000035908,NM_018781,uc007unb.1,uc007unc.1_5end | |||
|cluster_id=chr14:70477113..70477173,+ | |||
|description=CAGE_peak_1_at_Egr3_5end | |||
|id=chr14:70477113..70477173,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000893,6.77e-07,6;CL:0002489,6.77e-07,6;CL:0000898,6.77e-07,6;CL:0000809,6.77e-07,6;CL:0000810,6.77e-07,6;CL:0000895,6.77e-07,6;CL:0000808,6.77e-07,6;CL:0000894,6.77e-07,6;CL:0000806,6.77e-07,6;CL:0000807,6.77e-07,6;CL:0000805,6.77e-07,6;CL:0002425,6.77e-07,6;CL:0002436,6.77e-07,6;CL:0002427,6.77e-07,6;CL:0002428,6.77e-07,6;CL:0002429,6.77e-07,6;CL:0002433,6.77e-07,6;CL:0002431,6.77e-07,6;CL:0002432,6.77e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!2.24e-09!17;UBERON:0002021!2.28e-08!10;UBERON:0000411!2.28e-08!10;UBERON:0001950!2.28e-08!10;UBERON:0000956!4.53e-08!21;UBERON:0001869!4.53e-08!21;UBERON:0000203!4.53e-08!21;UBERON:0000153!5.85e-07!94;UBERON:0002791!8.18e-07!29;UBERON:0003528!8.18e-07!29;UBERON:0001893!8.18e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.98e-15,10;UBERON:0000411,2.98e-15,10;UBERON:0001950,2.98e-15,10;UBERON:0002619,3.14e-15,17;UBERON:0000956,1.42e-13,21;UBERON:0001869,1.42e-13,21;UBERON:0000203,1.42e-13,21;UBERON:0003528,8.25e-12,29;UBERON:0002791,8.25e-12,29;UBERON:0001893,8.25e-12,29;UBERON:0002020,9.37e-12,34;UBERON:0002780,7.68e-10,39;UBERON:0001890,7.68e-10,39;UBERON:0006240,7.68e-10,39;UBERON:0003080,1.82e-09,40;UBERON:0000014,4.12e-09,5;UBERON:0001003,4.12e-09,5;UBERON:0002097,4.12e-09,5;UBERON:0002199,4.12e-09,5;UBERON:0007029,4.12e-09,5;UBERON:0007376,4.12e-09,5;UBERON:0002416,4.12e-09,5;UBERON:0007383,4.12e-09,5;UBERON:0000073,7.09e-09,54;UBERON:0010371,1.11e-08,73;UBERON:0000955,1.99e-08,47;UBERON:0006238,1.99e-08,47;UBERON:0004121,2.47e-08,95;UBERON:0000924,2.47e-08,95;UBERON:0006601,2.47e-08,95;UBERON:0001049,1.10e-07,52;UBERON:0005068,1.10e-07,52;UBERON:0006241,1.10e-07,52;UBERON:0007135,1.10e-07,52;UBERON:0002616,1.42e-07,46;UBERON:0003056,8.17e-07,49 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0.774739940649458,142.618975539638,202.231750742202,11.1291679346578,8.29630453551499,1.02720437958723,0.611942816932982,0.999329285446988,0.607425802169478,0,4.73193248037357,3.56497527374921,2.97072756258621,1.61582251287033,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.811015449756117,0.183546752161682,0,0,0,0.194429899074283,0.55994568650145,0,6.87908684836719,0,0.336093799142464,0,0,0.515672092277442,0.202316460859598,0,0,1.35537812827653,0,0,0.988866362566974,0,0,0.384218305321555,0,0.135005938331691,0,0.285650984403804,1.10434270475807,1.10241719293459,0.766763768145891,1.83843757322004,1.10115880999389,1.53224805702225,0.768032666281217,0.131886287730194,0,0,0,0,0.45839474333043,0,1.28134512719193,0,0.075726193333184,0.755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,1.69012103732017,0,0,0,0,0,0,0.5709193985953,3.10725460376606,0,0,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0.289198713839823,0,0.647067399789637,0.441683036920787,0.969750506270444,0,0,0,0,1.1981512450592,0.599902730993408,0.254140454146129,0.149790639404823,15.0975198930147,4.14659361972453,6.60532416730651,3.58001640262463,1.66230435647648,3.56930778749067,0.101839363850316,0.497627882440372,0,0,0,0,0,0.60281927134286,0.136072998302656,0,0.0937017245597288,0,0,0,0.175951124163949,0.43839146485515,0.278047249225598,1.39300866608867,3.08673204611915,0,0,0,0.284163499395593,0,0,0,0.473489471170421,0,0.308534225774757,0,0,0,0,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,8.41159794256509,1.13195073617213,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.325929952884052,0.169745085775188,0.704070744865506,0.670025029767263,0.238043640886014,0.390267295715598,0,0,0,0.163863314715738,0,0,0,0,0,0,0.481651769963376,0,0.655739781506702,0,0,0,0,1.91175038362042,0.222798674082394,0.566153061577665,0,0.584511715822624,0.395287777946524,12.8528526568723,0.141940085208269,0,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0.178368817602071,0.164549020602121,0,0,0,0,9.39851641766436,10.8181165886257,12.9672788595535,8.95292580023523,11.1615811826642,0.291480836629851,0.18542530201051,0.512612642393558,0,0.370389054739423,0.188368457004691,0.820165366326151,1.14389086603261,1.35982743995084,2.79902904647316,1.79659965945751,0,0,0,0,0,0,0.404593039154462,0.495920734352016,0.523511883968059,0,1.24267862617385,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0.205421914329655,0,0,0.198681354781265,0,0.147689527174577,0.302899349844443,0.0762068066549998,0.201652370273681,0.682205165178267,0.288635524920988,0.116876902181569,0.453460767230423,0.221985953374065,0,0,0,0,0,0,0,5.64751842617067,2.76195141904306,3.43737308063638,5.32744865265431,7.53590771747707,9.06472676867641,5.40018000185445,9.90706647093285,15.406841905463,8.80192529978094,0,0,0.170733605754134,0,0.628839487883947,0.735374033800057,0.666740183404846,1.44224540067226,0.962757628775446,1.76888048234658,1.2673964994512,0.565879024158229,0.561849044819294,0.960377286073039,1.03383844120104,0.952587382566147,0.927074607558844,0.192909220463705,0,1.32479028120958,0.685738504770831,0.177475806159338,0.476872379894642,1.0174249164263,0.564656282491984,0.592302255241736,0.548783918618318,0,0.271608227691724,0,0,1.28055827088233,0.409231043169689,0.464810523557898,1.73615949883027,1.74867404556562,1.63752125911786,3.22306581072447,0.956441660344217,2.42650561031467,0.231867835620421 | |||
|short_description=p1@Egr3 | |||
}} |
Latest revision as of 08:03, 26 September 2015
Short description: | p1@Egr3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Egr3_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | -78bp_to_ENSMUST00000035908, NM_018781, uc007unb.1, uc007unc.1_5end |
EntrezGene: | Egr3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymocyte | 6.77e-07 | 6 |
double negative thymocyte | 6.77e-07 | 6 |
naive T cell | 6.77e-07 | 6 |
double-positive, alpha-beta thymocyte | 6.77e-07 | 6 |
CD4-positive, alpha-beta thymocyte | 6.77e-07 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.77e-07 | 6 |
DN4 thymocyte | 6.77e-07 | 6 |
DN1 thymic pro-T cell | 6.77e-07 | 6 |
DN2 thymocyte | 6.77e-07 | 6 |
DN3 thymocyte | 6.77e-07 | 6 |
immature single positive thymocyte | 6.77e-07 | 6 |
early T lineage precursor | 6.77e-07 | 6 |
mature CD4 single-positive thymocyte | 6.77e-07 | 6 |
resting double-positive thymocyte | 6.77e-07 | 6 |
double-positive blast | 6.77e-07 | 6 |
CD69-positive double-positive thymocyte | 6.77e-07 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 6.77e-07 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.77e-07 | 6 |
CD24-positive, CD4 single-positive thymocyte | 6.77e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.98e-15 | 10 |
visual cortex | 2.98e-15 | 10 |
neocortex | 2.98e-15 | 10 |
regional part of cerebral cortex | 3.14e-15 | 17 |
cerebral cortex | 1.42e-13 | 21 |
cerebral hemisphere | 1.42e-13 | 21 |
pallium | 1.42e-13 | 21 |
brain grey matter | 8.25e-12 | 29 |
regional part of telencephalon | 8.25e-12 | 29 |
telencephalon | 8.25e-12 | 29 |
gray matter | 9.37e-12 | 34 |
regional part of forebrain | 7.68e-10 | 39 |
forebrain | 7.68e-10 | 39 |
future forebrain | 7.68e-10 | 39 |
anterior neural tube | 1.82e-09 | 40 |
zone of skin | 4.12e-09 | 5 |
skin epidermis | 4.12e-09 | 5 |
skin of body | 4.12e-09 | 5 |
integument | 4.12e-09 | 5 |
surface | 4.12e-09 | 5 |
outer epithelium | 4.12e-09 | 5 |
integumental system | 4.12e-09 | 5 |
enveloping layer of ectoderm | 4.12e-09 | 5 |
regional part of nervous system | 7.09e-09 | 54 |
ecto-epithelium | 1.11e-08 | 73 |
brain | 1.99e-08 | 47 |
future brain | 1.99e-08 | 47 |
ectoderm-derived structure | 2.47e-08 | 95 |
ectoderm | 2.47e-08 | 95 |
presumptive ectoderm | 2.47e-08 | 95 |
neural tube | 1.10e-07 | 52 |
neural rod | 1.10e-07 | 52 |
future spinal cord | 1.10e-07 | 52 |
neural keel | 1.10e-07 | 52 |
regional part of brain | 1.42e-07 | 46 |
pre-chordal neural plate | 8.17e-07 | 49 |