FFCP PHASE1:Mm9::chr12:112404624..112404682,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:112404624..112404682,+
|short_description=p1@Traf3
|description=CAGE_peak_1_at_Traf3_5end
|association_with_transcript=0bp_to_ENSMUST00000021706_5end
|En...") |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=22031 | |EntrezGene=22031 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q60803 | |UniProt=Q60803 | ||
|association_with_transcript=0bp_to_ENSMUST00000021706_5end | |||
|cluster_id=chr12:112404624..112404682,+ | |||
|description=CAGE_peak_1_at_Traf3_5end | |||
|id=chr12:112404624..112404682,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.28e-10!23;CL:0000337!4.28e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.28e-10,23;CL:0000337,4.28e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.48e-16!52;UBERON:0005068!8.48e-16!52;UBERON:0006241!8.48e-16!52;UBERON:0007135!8.48e-16!52;UBERON:0002616!1.25e-13!49;UBERON:0007811!1.43e-13!86;UBERON:0000955!1.72e-13!50;UBERON:0006238!1.72e-13!50;UBERON:0001017!7.08e-13!73;UBERON:0005743!7.08e-13!73;UBERON:0000153!1.12e-12!94;UBERON:0002020!1.88e-12!34;UBERON:0003080!3.24e-12!40;UBERON:0000033!3.54e-12!63;UBERON:0002780!9.70e-12!39;UBERON:0001890!9.70e-12!39;UBERON:0006240!9.70e-12!39;UBERON:0003056!1.38e-11!49;UBERON:0000073!1.44e-11!75;UBERON:0001016!1.44e-11!75;UBERON:0002346!1.51e-10!71;UBERON:0003075!1.51e-10!71;UBERON:0007284!1.51e-10!71;UBERON:0000064!1.18e-09!99;UBERON:0002791!1.69e-09!29;UBERON:0003528!1.69e-09!29;UBERON:0001893!1.69e-09!29;UBERON:0004121!6.63e-08!102;UBERON:0000924!6.63e-08!102;UBERON:0006601!6.63e-08!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.14e-16,54;UBERON:0001049,8.48e-16,52;UBERON:0005068,8.48e-16,52;UBERON:0006241,8.48e-16,52;UBERON:0007135,8.48e-16,52;UBERON:0002346,7.93e-14,64;UBERON:0003075,7.93e-14,64;UBERON:0007284,7.93e-14,64;UBERON:0001017,7.08e-13,73;UBERON:0010371,1.43e-12,73;UBERON:0002020,1.88e-12,34;UBERON:0002616,2.21e-12,46;UBERON:0000955,3.00e-12,47;UBERON:0006238,3.00e-12,47;UBERON:0003080,3.24e-12,40;UBERON:0002780,9.70e-12,39;UBERON:0001890,9.70e-12,39;UBERON:0006240,9.70e-12,39;UBERON:0003056,1.38e-11,49;UBERON:0001016,1.44e-11,75;UBERON:0004121,5.07e-10,95;UBERON:0000924,5.07e-10,95;UBERON:0006601,5.07e-10,95;UBERON:0003528,1.69e-09,29;UBERON:0002791,1.69e-09,29;UBERON:0001893,1.69e-09,29 | |||
|phase1_expression=5.76535849577258,11.5161884520989,9.09998478779072,4.83942738090928,7.51343594919521,9.73699777088961,9.81173090501208,15.8821687833139,13.7972947708633,11.9372908424217,11.9852577757853,15.3162545271046,15.7504671536709,14.0746847894586,6.32908547449759,3.84703008040669,2.09868563438444,19.0854610041734,23.0352248457641,17.3999757237192,4.42225108785563,3.87234709683453,3.6567970479451,6.39969691173627,5.50582274561208,5.7423196411502,7.32295393470427,7.75696437669201,4.75058548640935,5.04060259519861,5.32153225572731,3.17515336729816,3.07532393792285,15.8481681015439,2.3108129580102,4.48833542467929,3.67504841272264,24.6933662134776,11.720030167857,10.470474879476,19.9998705930545,21.8574555186703,22.3334762394331,5.28766635497425,4.25783111121961,2.56965453026354,3.12956537739216,7.63088047331563,5.27246838562732,5.8328969722285,4.75953833526233,11.5002051491977,16.9460432118314,24.6623128283857,14.7881271622684,6.43148590089868,4.58453503902011,5.15672092277442,13.9598357993122,11.6378015439847,15.8457850876545,2.37191172448392,1.77858959222228,2.6996991518442,1.97773272513395,6.3943210345149,4.49400165777607,4.61061966385865,5.80661828927475,5.67024940993101,6.94072372459561,27.7081454871689,20.3199057675484,5.14461356702807,8.53024692062304,10.1114066527102,9.91042928994498,11.7472351038373,10.9060638611933,14.3756053625911,13.2657083223494,12.5019208933622,15.6342479440773,14.069065250792,13.7518422999129,16.4992007865254,16.9422300150933,15.8439528951505,3.02904773332736,2.49386148352392,7.24661221754194,2.58127163094416,2.03991400112325,3.2382191498269,1.94932925234301,3.13618820968135,4.0728881838208,3.91989741929533,2.85764605063156,3.18005617059306,5.49289337129054,5.13305909657271,0,7.11066703153331,8.65964164044856,12.1612735428047,9.0994400102661,4.22480354960522,11.3932668804756,5.49235914539852,3.81667718885499,2.13125834818499,2.99800146432876,2.11011696773672,3.52766121407114,5.27799683584637,3.70792451601561,4.19338135067744,7.07688441559899,9.70601099684455,4.63767188766826,2.90925151881133,1.86391761218122,3.22058876712702,10.4723353406728,6.89734049063197,5.03223522924865,2.39961092397363,3.68503658511888,12.8819949888148,6.40500843946077,5.52879149296603,9.73416193076748,14.0643501531682,9.97382613885888,13.1415423084884,5.70300437561771,6.34475550111474,4.0435641349388,8.83855794723191,5.85541993332167,3.44853156650209,6.66229880279792,5.27466862425003,5.17077393550092,5.50888997224854,5.99691037182265,6.20888089773638,2.80238390812695,3.21480336285293,4.75068035242662,7.01426343768239,5.00485048606076,6.268538997399,4.52720700097476,5.9710280045548,3.51106593656617,4.63226232806487,6.25159698670304,3.10688658803253,3.28336483973535,4.8616756594474,4.02466050494857,3.73852040320067,2.62254091908543,3.95307706075693,3.75582761959467,3.03589890154641,2.96207729844265,4.10418660197738,4.62092214411378,6.72519942156529,7.90380415047782,4.42881181909227,13.8791366052324,6.89460902941206,6.93879444265976,4.23120906661671,3.19932375802851,4.87697010906921,4.25262622362908,2.21851877085677,2.66853652613844,3.04361001780095,3.32170343081158,3.29397909448022,4.27269854960458,2.78539060857611,3.50935356814416,4.49409704327111,5.61958929674205,2.38969527905241,3.98302592001472,4.68418901699888,6.76246414038483,4.07302655690629,2.71533482034676,3.36651935473529,4.93244989569207,2.80459281161244,3.1399745568275,3.82531208157582,3.55743152504579,3.17005700860579,1.76903095601883,1.79889689907883,1.82574109249653,3.37648023653384,2.03700681425136,3.16465751195892,1.94562272130042,2.47105271869273,4.31304619582064,1.48856379067401,2.49630138491648,3.03094653536534,2.69096120282868,0.964887042726734,6.09685527549795,5.49525094134406,4.88894929326078,5.09235257325564,3.52035372432753,2.68010011906905,5.2369600994923,4.87834119644497,6.46304090835383,4.20782910332672,5.74037167166954,5.73521601505083,8.97961905702657,6.07526046042349,6.03165135757089,5.98296252200581,4.91764273019036,6.34654516500885,12.8440471990234,20.8636802134122,5.08198330667694,8.33154059774431,3.47059041357882,4.29482618726302,4.52389135238878,2.62865677747807,4.01037613348309,3.96307143104365,4.45291771842384,3.21481443702443,2.76701444562566,5.46246237917072,3.40656204499845,4.98583690268315,4.39794790254655,8.08353602565424,10.619611067197,2.42780636154981,4.53485335447127,2.82907619633847,3.83892460745005,6.14870295887855,5.42699415653264,5.81653967164009,6.06045543254026,8.84902922220285,9.48767477174989,14.4389760547462,8.17055053809091,6.84232157318979,6.46793418913772,8.3591443662321,7.09360934569094,7.84822797449111,5.92376474167636,6.69822888052118,4.22409074514679,4.2366414172764,5.95426674748397,3.79238381765404,4.68246837418126,5.30753739367772,4.17803204010978,6.23735419031233,2.91480836629851,11.1255181206306,6.83483523191411,4.54051109519089,3.1483069652851,3.01389531207506,7.24479406921433,6.63456702298916,7.64902934972349,4.47844647435706,6.63359874261234,0.954670618015114,4.11236791655476,3.45643094115643,4.53622431451565,4.39085421630384,3.49380101993884,4.5853877770839,4.46328660916814,6.28214260761671,4.40690909192096,4.97071450469541,0.56369293868419,3.13984746692355,3.14371131868485,6.22243802700952,5.16639293910924,4.89972763923257,4.3422178298929,3.6457227756306,3.98465508817701,2.65742532908607,2.88030006257865,5.05617793005085,4.66267995167378,4.00572732942826,4.54722880422283,4.47566739168704,3.57626438606277,6.73094517311826,7.53216588590344,5.95702054694071,6.85861259894999,6.55370203389463,6.33476224808391,6.34998154826174,5.37633750035217,3.40095575422817,3.32978930061097,2.87084341150322,3.35769232728157,7.14801497919105,4.50437941082837,5.31139710375069,4.93047271881851,3.00943262421218,20.3310663342144,18.4130094602871,18.9055519435001,22.1690605223357,8.90607275701835,12.8416962556249,10.1253375034771,10.8077088773813,8.15656336171568,8.28416498802912,5.39694207437719,5.98537310101547,5.80494259564056,6.56388136084394,3.5634237646757,7.72142735490059,4.4449345560323,4.73880631649457,5.77654577265267,5.05394423527595,9.63221339582911,5.47016390019621,5.89941497060259,4.86591158277006,5.74354689556133,4.28664322154766,8.22778714208474,5.98018583437486,4.94503080963968,6.47675248591348,5.48590803816665,3.90446773550542,4.05341522910446,5.66851024866081,4.14081273827455,7.10762706290083,5.48783918618318,4.47218509444333,6.11118512306378,6.17256498823512,5.81311588808453,6.50129583678719,4.91077251803627,5.26785260032284,7.9091710502268,5.9954538705107,7.01794825336225,6.01638951335235,7.26895661861605,3.08827986767322,4.86922454802885 | |phase1_expression=5.76535849577258,11.5161884520989,9.09998478779072,4.83942738090928,7.51343594919521,9.73699777088961,9.81173090501208,15.8821687833139,13.7972947708633,11.9372908424217,11.9852577757853,15.3162545271046,15.7504671536709,14.0746847894586,6.32908547449759,3.84703008040669,2.09868563438444,19.0854610041734,23.0352248457641,17.3999757237192,4.42225108785563,3.87234709683453,3.6567970479451,6.39969691173627,5.50582274561208,5.7423196411502,7.32295393470427,7.75696437669201,4.75058548640935,5.04060259519861,5.32153225572731,3.17515336729816,3.07532393792285,15.8481681015439,2.3108129580102,4.48833542467929,3.67504841272264,24.6933662134776,11.720030167857,10.470474879476,19.9998705930545,21.8574555186703,22.3334762394331,5.28766635497425,4.25783111121961,2.56965453026354,3.12956537739216,7.63088047331563,5.27246838562732,5.8328969722285,4.75953833526233,11.5002051491977,16.9460432118314,24.6623128283857,14.7881271622684,6.43148590089868,4.58453503902011,5.15672092277442,13.9598357993122,11.6378015439847,15.8457850876545,2.37191172448392,1.77858959222228,2.6996991518442,1.97773272513395,6.3943210345149,4.49400165777607,4.61061966385865,5.80661828927475,5.67024940993101,6.94072372459561,27.7081454871689,20.3199057675484,5.14461356702807,8.53024692062304,10.1114066527102,9.91042928994498,11.7472351038373,10.9060638611933,14.3756053625911,13.2657083223494,12.5019208933622,15.6342479440773,14.069065250792,13.7518422999129,16.4992007865254,16.9422300150933,15.8439528951505,3.02904773332736,2.49386148352392,7.24661221754194,2.58127163094416,2.03991400112325,3.2382191498269,1.94932925234301,3.13618820968135,4.0728881838208,3.91989741929533,2.85764605063156,3.18005617059306,5.49289337129054,5.13305909657271,0,7.11066703153331,8.65964164044856,12.1612735428047,9.0994400102661,4.22480354960522,11.3932668804756,5.49235914539852,3.81667718885499,2.13125834818499,2.99800146432876,2.11011696773672,3.52766121407114,5.27799683584637,3.70792451601561,4.19338135067744,7.07688441559899,9.70601099684455,4.63767188766826,2.90925151881133,1.86391761218122,3.22058876712702,10.4723353406728,6.89734049063197,5.03223522924865,2.39961092397363,3.68503658511888,12.8819949888148,6.40500843946077,5.52879149296603,9.73416193076748,14.0643501531682,9.97382613885888,13.1415423084884,5.70300437561771,6.34475550111474,4.0435641349388,8.83855794723191,5.85541993332167,3.44853156650209,6.66229880279792,5.27466862425003,5.17077393550092,5.50888997224854,5.99691037182265,6.20888089773638,2.80238390812695,3.21480336285293,4.75068035242662,7.01426343768239,5.00485048606076,6.268538997399,4.52720700097476,5.9710280045548,3.51106593656617,4.63226232806487,6.25159698670304,3.10688658803253,3.28336483973535,4.8616756594474,4.02466050494857,3.73852040320067,2.62254091908543,3.95307706075693,3.75582761959467,3.03589890154641,2.96207729844265,4.10418660197738,4.62092214411378,6.72519942156529,7.90380415047782,4.42881181909227,13.8791366052324,6.89460902941206,6.93879444265976,4.23120906661671,3.19932375802851,4.87697010906921,4.25262622362908,2.21851877085677,2.66853652613844,3.04361001780095,3.32170343081158,3.29397909448022,4.27269854960458,2.78539060857611,3.50935356814416,4.49409704327111,5.61958929674205,2.38969527905241,3.98302592001472,4.68418901699888,6.76246414038483,4.07302655690629,2.71533482034676,3.36651935473529,4.93244989569207,2.80459281161244,3.1399745568275,3.82531208157582,3.55743152504579,3.17005700860579,1.76903095601883,1.79889689907883,1.82574109249653,3.37648023653384,2.03700681425136,3.16465751195892,1.94562272130042,2.47105271869273,4.31304619582064,1.48856379067401,2.49630138491648,3.03094653536534,2.69096120282868,0.964887042726734,6.09685527549795,5.49525094134406,4.88894929326078,5.09235257325564,3.52035372432753,2.68010011906905,5.2369600994923,4.87834119644497,6.46304090835383,4.20782910332672,5.74037167166954,5.73521601505083,8.97961905702657,6.07526046042349,6.03165135757089,5.98296252200581,4.91764273019036,6.34654516500885,12.8440471990234,20.8636802134122,5.08198330667694,8.33154059774431,3.47059041357882,4.29482618726302,4.52389135238878,2.62865677747807,4.01037613348309,3.96307143104365,4.45291771842384,3.21481443702443,2.76701444562566,5.46246237917072,3.40656204499845,4.98583690268315,4.39794790254655,8.08353602565424,10.619611067197,2.42780636154981,4.53485335447127,2.82907619633847,3.83892460745005,6.14870295887855,5.42699415653264,5.81653967164009,6.06045543254026,8.84902922220285,9.48767477174989,14.4389760547462,8.17055053809091,6.84232157318979,6.46793418913772,8.3591443662321,7.09360934569094,7.84822797449111,5.92376474167636,6.69822888052118,4.22409074514679,4.2366414172764,5.95426674748397,3.79238381765404,4.68246837418126,5.30753739367772,4.17803204010978,6.23735419031233,2.91480836629851,11.1255181206306,6.83483523191411,4.54051109519089,3.1483069652851,3.01389531207506,7.24479406921433,6.63456702298916,7.64902934972349,4.47844647435706,6.63359874261234,0.954670618015114,4.11236791655476,3.45643094115643,4.53622431451565,4.39085421630384,3.49380101993884,4.5853877770839,4.46328660916814,6.28214260761671,4.40690909192096,4.97071450469541,0.56369293868419,3.13984746692355,3.14371131868485,6.22243802700952,5.16639293910924,4.89972763923257,4.3422178298929,3.6457227756306,3.98465508817701,2.65742532908607,2.88030006257865,5.05617793005085,4.66267995167378,4.00572732942826,4.54722880422283,4.47566739168704,3.57626438606277,6.73094517311826,7.53216588590344,5.95702054694071,6.85861259894999,6.55370203389463,6.33476224808391,6.34998154826174,5.37633750035217,3.40095575422817,3.32978930061097,2.87084341150322,3.35769232728157,7.14801497919105,4.50437941082837,5.31139710375069,4.93047271881851,3.00943262421218,20.3310663342144,18.4130094602871,18.9055519435001,22.1690605223357,8.90607275701835,12.8416962556249,10.1253375034771,10.8077088773813,8.15656336171568,8.28416498802912,5.39694207437719,5.98537310101547,5.80494259564056,6.56388136084394,3.5634237646757,7.72142735490059,4.4449345560323,4.73880631649457,5.77654577265267,5.05394423527595,9.63221339582911,5.47016390019621,5.89941497060259,4.86591158277006,5.74354689556133,4.28664322154766,8.22778714208474,5.98018583437486,4.94503080963968,6.47675248591348,5.48590803816665,3.90446773550542,4.05341522910446,5.66851024866081,4.14081273827455,7.10762706290083,5.48783918618318,4.47218509444333,6.11118512306378,6.17256498823512,5.81311588808453,6.50129583678719,4.91077251803627,5.26785260032284,7.9091710502268,5.9954538705107,7.01794825336225,6.01638951335235,7.26895661861605,3.08827986767322,4.86922454802885 | ||
|short_description=p1@Traf3 | |||
}} | }} |
Latest revision as of 08:22, 26 September 2015
Short description: | p1@Traf3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Traf3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000021706_5end |
EntrezGene: | Traf3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.28e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.28e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.14e-16 | 54 |
neural tube | 8.48e-16 | 52 |
neural rod | 8.48e-16 | 52 |
future spinal cord | 8.48e-16 | 52 |
neural keel | 8.48e-16 | 52 |
neurectoderm | 7.93e-14 | 64 |
neural plate | 7.93e-14 | 64 |
presumptive neural plate | 7.93e-14 | 64 |
central nervous system | 7.08e-13 | 73 |
ecto-epithelium | 1.43e-12 | 73 |
gray matter | 1.88e-12 | 34 |
regional part of brain | 2.21e-12 | 46 |
brain | 3.00e-12 | 47 |
future brain | 3.00e-12 | 47 |
anterior neural tube | 3.24e-12 | 40 |
regional part of forebrain | 9.70e-12 | 39 |
forebrain | 9.70e-12 | 39 |
future forebrain | 9.70e-12 | 39 |
pre-chordal neural plate | 1.38e-11 | 49 |
nervous system | 1.44e-11 | 75 |
ectoderm-derived structure | 5.07e-10 | 95 |
ectoderm | 5.07e-10 | 95 |
presumptive ectoderm | 5.07e-10 | 95 |
brain grey matter | 1.69e-09 | 29 |
regional part of telencephalon | 1.69e-09 | 29 |
telencephalon | 1.69e-09 | 29 |