FFCP PHASE1:Mm9::chr4:128404812..128404823,+: Difference between revisions
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{{FFCP|EntrezGene=54383|HGNC=|UniProt=Q9QWH1|association_with_transcript=0bp_to_NM_001195083,uc008uvk.2,uc008uvl.2_5end|description=CAGE_peak_2_at_Phc2_5end|id=chr4:128404812..128404823,+|ontology_enrichment_celltype=CL:0000117!1.10e-07!23;CL:0000337!1.10e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-07,23;CL:0000337,1.09e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.85e-13!52;UBERON:0005068!1.85e-13!52;UBERON:0006241!1.85e-13!52;UBERON:0007135!1.85e-13!52;UBERON:0000955!4.57e-13!50;UBERON:0006238!4.57e-13!50;UBERON:0002616!5.70e-13!49;UBERON:0000033!1.11e-12!63;UBERON:0000073!3.82e-12!75;UBERON:0001016!3.82e-12!75;UBERON:0002780!2.91e-11!39;UBERON:0001890!2.91e-11!39;UBERON:0006240!2.91e-11!39;UBERON:0001017!3.18e-11!73;UBERON:0005743!3.18e-11!73;UBERON:0003080!5.48e-11!40;UBERON:0003056!1.69e-10!49;UBERON:0002346!2.88e-10!71;UBERON:0003075!2.88e-10!71;UBERON:0007284!2.88e-10!71;UBERON:0004121!5.32e-10!102;UBERON:0000924!5.32e-10!102;UBERON:0006601!5.32e-10!102;UBERON:0002791!1.43e-09!29;UBERON:0003528!1.43e-09!29;UBERON:0001893!1.43e-09!29;UBERON:0002020!1.46e-09!34;UBERON:0000025!1.56e-09!114;UBERON:0007811!2.46e-09!86;UBERON:0004111!5.96e-09!122;UBERON:0000153!4.21e-08!94;UBERON:0000956!3.53e-07!21;UBERON:0001869!3.53e-07!21;UBERON:0000203!3.53e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.83e-13,52;UBERON:0005068,1.83e-13,52;UBERON:0006241,1.83e-13,52;UBERON:0007135,1.83e-13,52;UBERON:0000073,3.94e-13,54;UBERON:0000955,5.77e-13,47;UBERON:0006238,5.77e-13,47;UBERON:0002616,7.10e-13,46;UBERON:0001016,3.82e-12,75;UBERON:0002780,2.89e-11,39;UBERON:0001890,2.89e-11,39;UBERON:0006240,2.89e-11,39;UBERON:0001017,3.18e-11,73;UBERON:0003080,5.44e-11,40;UBERON:0002346,6.98e-11,64;UBERON:0003075,6.98e-11,64;UBERON:0007284,6.98e-11,64;UBERON:0003056,1.67e-10,49;UBERON:0004121,2.57e-10,95;UBERON:0000924,2.57e-10,95;UBERON:0006601,2.57e-10,95;UBERON:0010314,1.34e-09,92;UBERON:0003528,1.42e-09,29;UBERON:0002791,1.42e-09,29;UBERON:0001893,1.42e-09,29;UBERON:0002020,1.46e-09,34;UBERON:0000025,1.89e-09,114;UBERON:0010371,7.12e-09,73;UBERON:0004111,7.51e-09,122;UBERON:0000956,3.52e-07,21;UBERON:0001869,3.52e-07,21;UBERON:0000203,3.52e-07,21|phase1_expression=3.20297694209588,1.74487703819681,2.27499619694768,1.20985684522732,0.500895729946347,1.51091344720701,1.40167584357315,3.35720640948098,2.67498572088167,1.87251621057595,1.71217968225505,2.6324812468461,2.9104124088305,3.4968160967599,1.99865857089398,2.22722794128809,4.19737126876888,2.68142840554502,2.74228867211478,3.39511721438424,3.82694805679814,2.78014663362479,1.82839852397255,1.27993938234725,1.37645568640302,1.72269589234506,1.7230479846363,1.72376986148711,0.950117097281869,2.01624103807945,1.55211357458713,0,1.23012957516914,0,1.73310971850765,1.16364251750945,2.24586291888606,3.34825304589526,4.6880120671428,0.523523743973798,1.76469446409304,1.36609096991689,1.94204141212461,2.01434908760924,1.4192770370732,1.65192076945513,7.04152209913235,4.14247797122848,4.17403747195497,3.30530828426282,3.49966054063406,7.18762821824858,2.34895648480831,1.45072428402269,3.36093799142464,2.57259436035947,0.85960031981627,2.57836046138721,6.27181028664753,6.34789175126439,3.1691570175309,8.13226876965917,5.33576877666684,2.6996991518442,0,7.104801149461,4.19440154725767,8.06858441175265,10.0578923939223,9.99043943654511,8.62332341540666,3.99911378165325,3.75476519617743,7.4719387521122,8.72193786265951,4.5960939330501,2.20231761998777,4.08599481872601,3.22573719838111,6.3305418110493,5.03182039813253,4.68822033501084,6.42120897703176,2.25105044012672,3.66715794664344,1.47314292736834,2.56269025438385,4.47358669980721,5.14938114665652,4.98772296704784,2.02905142091174,2.58127163094416,4.75979933595425,2.69851595818909,1.94932925234301,0.896053774194671,2.52799956237153,2.55645483867087,1.03914401841148,2.47337702157238,3.23939865486365,1.28326477414318,2.54805239706646,0,3.030874574157,4.05375784760158,4.04419556011827,1.94112595522402,2.33044095282455,2.52351636410202,2.4287945747259,2.43572382649713,2.30615497256059,1.95939432718409,2.4693628498498,4.64966387919799,3.21353458054686,2.16899035379867,0,4.85300549842228,1.54589062922275,1.93950101254089,0,5.5628351432194,6.0739544975902,1.53274233125155,2.15667224110656,1.19980546198682,1.90605340609597,2.39665023047716,2.74500361691176,7.66491547888473,4.34560800480691,3.83573185995496,3.74018480207208,4.38051410282946,4.9901288286655,2.11491850037158,2.77995034277042,1.89397670297827,3.12289063110489,1.37941262660084,4.50155324513373,2.56198190320716,2.99360596265843,4.09963904911519,3.74806898238915,2.32833033665114,6.03590380211958,3.9712276835242,2.81521798662318,1.53437012699302,0.834141747676794,1.39300866608867,0.823128545631774,1.79130840136644,1.40442637462647,0.51469581422943,1.42081749697796,3.10688658803253,2.34526059981096,2.88099298337624,4.49814997611899,2.36117078096885,2.93107514486019,2.09280550275367,2.414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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54383 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q9QWH1 | |||
|association_with_transcript=0bp_to_NM_001195083,uc008uvk.2,uc008uvl.2_5end | |||
|cluster_id=chr4:128404812..128404823,+ | |||
|description=CAGE_peak_2_at_Phc2_5end | |||
|id=chr4:128404812..128404823,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.10e-07!23;CL:0000337!1.10e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-07,23;CL:0000337,1.09e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.85e-13!52;UBERON:0005068!1.85e-13!52;UBERON:0006241!1.85e-13!52;UBERON:0007135!1.85e-13!52;UBERON:0000955!4.57e-13!50;UBERON:0006238!4.57e-13!50;UBERON:0002616!5.70e-13!49;UBERON:0000033!1.11e-12!63;UBERON:0000073!3.82e-12!75;UBERON:0001016!3.82e-12!75;UBERON:0002780!2.91e-11!39;UBERON:0001890!2.91e-11!39;UBERON:0006240!2.91e-11!39;UBERON:0001017!3.18e-11!73;UBERON:0005743!3.18e-11!73;UBERON:0003080!5.48e-11!40;UBERON:0003056!1.69e-10!49;UBERON:0002346!2.88e-10!71;UBERON:0003075!2.88e-10!71;UBERON:0007284!2.88e-10!71;UBERON:0004121!5.32e-10!102;UBERON:0000924!5.32e-10!102;UBERON:0006601!5.32e-10!102;UBERON:0002791!1.43e-09!29;UBERON:0003528!1.43e-09!29;UBERON:0001893!1.43e-09!29;UBERON:0002020!1.46e-09!34;UBERON:0000025!1.56e-09!114;UBERON:0007811!2.46e-09!86;UBERON:0004111!5.96e-09!122;UBERON:0000153!4.21e-08!94;UBERON:0000956!3.53e-07!21;UBERON:0001869!3.53e-07!21;UBERON:0000203!3.53e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.83e-13,52;UBERON:0005068,1.83e-13,52;UBERON:0006241,1.83e-13,52;UBERON:0007135,1.83e-13,52;UBERON:0000073,3.94e-13,54;UBERON:0000955,5.77e-13,47;UBERON:0006238,5.77e-13,47;UBERON:0002616,7.10e-13,46;UBERON:0001016,3.82e-12,75;UBERON:0002780,2.89e-11,39;UBERON:0001890,2.89e-11,39;UBERON:0006240,2.89e-11,39;UBERON:0001017,3.18e-11,73;UBERON:0003080,5.44e-11,40;UBERON:0002346,6.98e-11,64;UBERON:0003075,6.98e-11,64;UBERON:0007284,6.98e-11,64;UBERON:0003056,1.67e-10,49;UBERON:0004121,2.57e-10,95;UBERON:0000924,2.57e-10,95;UBERON:0006601,2.57e-10,95;UBERON:0010314,1.34e-09,92;UBERON:0003528,1.42e-09,29;UBERON:0002791,1.42e-09,29;UBERON:0001893,1.42e-09,29;UBERON:0002020,1.46e-09,34;UBERON:0000025,1.89e-09,114;UBERON:0010371,7.12e-09,73;UBERON:0004111,7.51e-09,122;UBERON:0000956,3.52e-07,21;UBERON:0001869,3.52e-07,21;UBERON:0000203,3.52e-07,21 | |||
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| |||
|short_description=p2@Phc2 | |||
}} |
Latest revision as of 08:57, 26 September 2015
Short description: | p2@Phc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Phc2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001195083, uc008uvk.2, uc008uvl.2_5end |
EntrezGene: | Phc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.09e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.83e-13 | 52 |
neural rod | 1.83e-13 | 52 |
future spinal cord | 1.83e-13 | 52 |
neural keel | 1.83e-13 | 52 |
regional part of nervous system | 3.94e-13 | 54 |
brain | 5.77e-13 | 47 |
future brain | 5.77e-13 | 47 |
regional part of brain | 7.10e-13 | 46 |
nervous system | 3.82e-12 | 75 |
regional part of forebrain | 2.89e-11 | 39 |
forebrain | 2.89e-11 | 39 |
future forebrain | 2.89e-11 | 39 |
central nervous system | 3.18e-11 | 73 |
anterior neural tube | 5.44e-11 | 40 |
neurectoderm | 6.98e-11 | 64 |
neural plate | 6.98e-11 | 64 |
presumptive neural plate | 6.98e-11 | 64 |
pre-chordal neural plate | 1.67e-10 | 49 |
ectoderm-derived structure | 2.57e-10 | 95 |
ectoderm | 2.57e-10 | 95 |
presumptive ectoderm | 2.57e-10 | 95 |
structure with developmental contribution from neural crest | 1.34e-09 | 92 |
brain grey matter | 1.42e-09 | 29 |
regional part of telencephalon | 1.42e-09 | 29 |
telencephalon | 1.42e-09 | 29 |
gray matter | 1.46e-09 | 34 |
tube | 1.89e-09 | 114 |
ecto-epithelium | 7.12e-09 | 73 |
anatomical conduit | 7.51e-09 | 122 |
cerebral cortex | 3.52e-07 | 21 |
cerebral hemisphere | 3.52e-07 | 21 |
pallium | 3.52e-07 | 21 |