FFCP PHASE1:Mm9::chr12:120477267..120477336,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=320910|HGNC=|MCL_coexpression_id=11|UniProt=Q0VBD0|association_with_transcript=0bp_to_ENSMUST00000026360,ENSMUST00000151023_5end|description=CAGE_peak_1_at_Itgb8_5end|id=chr12:120477267..120477336,-|ontology_enrichment_celltype=CL:0000221!2.07e-09!44;CL:0000133!2.07e-09!44;CL:0002319!6.90e-09!43;CL:0000055!1.67e-08!50|ontology_enrichment_celltype_v019_2=CL:0000221,1.40e-09,44;CL:0000133,1.40e-09,44;CL:0002319,4.79e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.09e-21!102;UBERON:0000924!1.09e-21!102;UBERON:0006601!1.09e-21!102;UBERON:0000073!9.04e-20!75;UBERON:0001016!9.04e-20!75;UBERON:0001017!1.32e-18!73;UBERON:0005743!1.32e-18!73;UBERON:0000033!3.36e-16!63;UBERON:0002346!1.29e-14!71;UBERON:0003075!1.29e-14!71;UBERON:0007284!1.29e-14!71;UBERON:0001049!1.67e-14!52;UBERON:0005068!1.67e-14!52;UBERON:0006241!1.67e-14!52;UBERON:0007135!1.67e-14!52;UBERON:0000955!2.67e-14!50;UBERON:0006238!2.67e-14!50;UBERON:0002616!1.09e-13!49;UBERON:0003056!1.60e-11!49;UBERON:0002020!2.36e-11!34;UBERON:0003080!1.53e-10!40;UBERON:0002780!3.46e-10!39;UBERON:0001890!3.46e-10!39;UBERON:0006240!3.46e-10!39;UBERON:0002791!1.03e-09!29;UBERON:0003528!1.03e-09!29;UBERON:0001893!1.03e-09!29;UBERON:0002619!1.05e-07!17;UBERON:0000956!1.46e-07!21;UBERON:0001869!1.46e-07!21;UBERON:0000203!1.46e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.57e-23,95;UBERON:0000924,4.57e-23,95;UBERON:0006601,4.57e-23,95;UBERON:0001016,3.64e-20,75;UBERON:0001017,5.64e-19,73;UBERON:0010371,4.36e-17,73;UBERON:0002346,5.50e-16,64;UBERON:0003075,5.50e-16,64;UBERON:0007284,5.50e-16,64;UBERON:0000073,9.33e-16,54;UBERON:0010314,1.53e-15,92;UBERON:0001049,8.74e-15,52;UBERON:0005068,8.74e-15,52;UBERON:0006241,8.74e-15,52;UBERON:0007135,8.74e-15,52;UBERON:0000955,3.95e-13,47;UBERON:0006238,3.95e-13,47;UBERON:0002616,1.59e-12,46;UBERON:0003056,9.77e-12,49;UBERON:0002020,1.45e-11,34;UBERON:0003080,9.81e-11,40;UBERON:0002780,2.25e-10,39;UBERON:0001890,2.25e-10,39;UBERON:0006240,2.25e-10,39;UBERON:0003528,6.86e-10,29;UBERON:0002791,6.86e-10,29;UBERON:0001893,6.86e-10,29;UBERON:0002619,7.74e-08,17;UBERON:0000956,1.08e-07,21;UBERON:0001869,1.08e-07,21;UBERON:0000203,1.08e-07,21;UBERON:0002021,7.91e-07,10;UBERON:0000411,7.91e-07,10;UBERON:0001950,7.91e-07,10|phase1_expression=7.04654927261093,2.79180326111489,3.63999391511629,0,0,10.4085148585372,8.64366770203445,6.58528949552039,0.140788722151667,0,0,0,0,0.0874204024189974,0,0,0,0,0.274228867211478,0,14.5424026158329,0,0,12.6394014006791,15.8292403936347,2.8711598205751,3.4460959692726,3.878482188346,0,0,2.21730510655305,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,2.53442328048786,1.46837401729345,1.56478268869608,17.0059621976748,8.78744730937887,22.9427280907654,7.27929392451885,7.18762821824858,0,7.25362142011344,0,3.8588915405392,8.30946975822394,5.15672092277442,3.23706337375356,3.1739458756322,6.33831403506179,3.72728985276045,5.33576877666684,0,0.988866362566974,0,14.081205194365,13.0634223809329,2.7996195323289,2.70011876663381,2.94454945891935,11.4260393761521,7.28866185140325,4.04219637409348,3.1629005436018,2.75765635983006,14.3150645299205,12.6410464704336,11.366883460962,4.48413378282659,3.93396867490361,5.73004707612436,10.6089539620525,13.5063026407603,12.835052813252,11.490514833473,11.6744778255264,3.91438836233131,11.8132861599767,39.2972112555285,18.8411917656091,2.58127163094416,0.679971333707751,0,0,0,8.70755404816862,0,0,0,18.1688011511918,1.28326477414318,0,7.11066703153331,0.432982082022428,0.253359865475099,0.505524445014783,14.5013527243206,2.58937883647172,5.34391700633369,1.21439728736295,2.13125834818499,1.61430848079241,1.65794904607885,3.52766121407114,3.26733137457156,13.8429181931249,2.02439099687876,0.884610551949874,1.94120219936891,0.220841518460394,1.45462575940567,0,5.85561594023094,5.65506108396329,0.255457055208591,0,0,0,8.38827580667007,15.0975198930147,2.89005009859588,15.2965401769203,10.2286182932132,11.4283424507758,11.356888414743,7.73979165262404,1.8661045591514,3.79084137650512,8.20723237957248,5.98554037628437,3.44853156650209,3.42118046630164,1.80845781402858,4.35433594568498,4.22775276940004,4.31027932974753,4.9153640440413,1.72454394346274,5.48407632486676,4.92663147659057,2.84954452155847,3.33656699070717,2.43776516565517,2.67516777330327,5.17489093728082,0,0,0,4.97101854085205,6.56672967947069,4.8616756594474,6.62885259638589,3.93528463494808,4.01094493507183,1.62773761325285,3.75582761959467,1.5179494507732,2.30383789878873,1.64167464079095,2.35099547682982,1.16959989940266,1.53685080703735,1.47627060636409,7.57043814830858,6.5858951922742,0,0.793351699990633,2.98603550749328,1.39342003116263,4.25262622362908,1.81515172161008,1.77902435075896,2.66315876557583,0,1.15289268306808,2.01068167040216,1.59165177632921,1.16978452271472,0,0.648414149624083,0.398282546508734,0.379335801906163,2.62771579002376,4.50830942692322,5.29493452397817,7.5641469995374,17.393683332799,19.2239072857742,60.3725505236573,61.8574987695017,49.1120712408766,0.296452627087149,0.83422552858047,0.786235980452812,0.224862112384854,0,0,0.25462585178142,0.575392274901621,0.486405680325106,0.274561413188081,0,0.372140947668503,1.24815069245824,0.252578877947112,0.538192240565737,0.482443521363367,2.21703828199926,4.54779388249163,4.72598431681875,4.75286240170527,3.52035372432753,0.670025029767263,1.42826184531608,0.975668239288994,2.99506773801763,1.32878813789265,3.02964060449226,1.96635977658886,0.863424909329478,1.44649058581512,0,0.54390568381871,1.47529281905711,4.13905119457099,18.3027672586083,14.2998257642488,1.14754461763673,0.504941854408746,3.78609863299508,2.73307121007647,4.30846795465598,2.86762557543062,4.90157082981267,3.67999490025482,2.02405350837447,3.21481443702443,1.97643888973262,18.315315036043,5.25178315270594,2.84904965867608,5.86393053672874,14.0224604526655,6.63725691699814,3.64170954232472,2.11626489875326,1.88605079755898,0.590603785761546,1.84461088766356,2.58428293168221,3.99887102425256,3.20847640546249,1.8962205476149,2.10837217149998,4.12542172992747,6.46835250932197,4.32146625675145,1.4229455216103,4.07240366560025,4.25616560741457,2.85390108163313,3.78462747384878,1.8267896946876,3.05073220482823,13.3454204644207,2.8668691747145,4.78170133530292,3.06782410722221,2.83470747162333,3.58117032009409,4.76008609260678,0.582961673259701,13.1651964427462,0.170870880797853,1.44470807574256,0.925972636848558,0.188368457004691,0,0,0,0,0.138199973804424,0,4.11236791655476,2.43983360552218,2.48412283890143,3.55450103224597,2.40198820120795,2.29269388854195,2.0663363931334,0.523511883968059,0.259229946583586,5.59205381778233,0.56369293868419,12.4098733216502,10.2584264083401,13.8060343724274,13.1743019947286,14.6991829176977,14.4349403534277,12.2392121753313,13.0025587087881,3.38217769156408,1.44015003128933,0.948033361884535,0.810900861160657,0.616265742988964,0,0.358053391334963,0.39736270956253,0.360586348559907,0.147689527174577,0.504832249740738,0.381034033274999,0.604957110821043,0.877120926657772,0.192423683280659,1.28564592399726,1.81384306892169,0.221985953374065,0,0,2.12508553435409,29.6538311212868,17.948859178192,3.42989406526505,1.50471631210609,19.2015626489803,17.0320337507655,13.1765968091061,13.0608418581203,15.0718154349541,21.9064230243013,16.8755625057951,10.3573876741571,9.9691329976525,15.0150490408028,2.28332164685189,4.38927360741134,3.58540572083682,1.70174701947806,3.14419743941973,1.47074806760011,3.77819437262746,3.09052585858341,1.28367683836726,4.29585259998456,2.28131369901216,3.2066478035633,2.1537546718073,2.30490548657529,3.15895079255873,2.38146845641537,3.36064545240081,1.54327376370964,4.94503080963968,3.23837624295674,2.40008476669791,1.06485483695602,2.86123427936785,2.61623549938191,2.1645157495526,2.79228206042532,2.37806364734604,3.15683653725411,2.03706170768793,3.92799590160417,2.84724043498018,2.75812550651578,1.63692417267876,2.78886314134739,1.35034627686799,3.99696924700713,2.8071793013449,4.08255002691767,2.86932498103265,2.20591419119516,2.08681052058379|short_description=p1@Itgb8}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=320910 | |||
|HGNC= | |||
|MCL_coexpression_id=11 | |||
|TSSclassifier=NA | |||
|UniProt=Q0VBD0 | |||
|association_with_transcript=0bp_to_ENSMUST00000026360,ENSMUST00000151023_5end | |||
|cluster_id=chr12:120477267..120477336,- | |||
|description=CAGE_peak_1_at_Itgb8_5end | |||
|id=chr12:120477267..120477336,- | |||
|ontology_enrichment_celltype=CL:0000221!2.07e-09!44;CL:0000133!2.07e-09!44;CL:0002319!6.90e-09!43;CL:0000055!1.67e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.40e-09,44;CL:0000133,1.40e-09,44;CL:0002319,4.79e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.09e-21!102;UBERON:0000924!1.09e-21!102;UBERON:0006601!1.09e-21!102;UBERON:0000073!9.04e-20!75;UBERON:0001016!9.04e-20!75;UBERON:0001017!1.32e-18!73;UBERON:0005743!1.32e-18!73;UBERON:0000033!3.36e-16!63;UBERON:0002346!1.29e-14!71;UBERON:0003075!1.29e-14!71;UBERON:0007284!1.29e-14!71;UBERON:0001049!1.67e-14!52;UBERON:0005068!1.67e-14!52;UBERON:0006241!1.67e-14!52;UBERON:0007135!1.67e-14!52;UBERON:0000955!2.67e-14!50;UBERON:0006238!2.67e-14!50;UBERON:0002616!1.09e-13!49;UBERON:0003056!1.60e-11!49;UBERON:0002020!2.36e-11!34;UBERON:0003080!1.53e-10!40;UBERON:0002780!3.46e-10!39;UBERON:0001890!3.46e-10!39;UBERON:0006240!3.46e-10!39;UBERON:0002791!1.03e-09!29;UBERON:0003528!1.03e-09!29;UBERON:0001893!1.03e-09!29;UBERON:0002619!1.05e-07!17;UBERON:0000956!1.46e-07!21;UBERON:0001869!1.46e-07!21;UBERON:0000203!1.46e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.57e-23,95;UBERON:0000924,4.57e-23,95;UBERON:0006601,4.57e-23,95;UBERON:0001016,3.64e-20,75;UBERON:0001017,5.64e-19,73;UBERON:0010371,4.36e-17,73;UBERON:0002346,5.50e-16,64;UBERON:0003075,5.50e-16,64;UBERON:0007284,5.50e-16,64;UBERON:0000073,9.33e-16,54;UBERON:0010314,1.53e-15,92;UBERON:0001049,8.74e-15,52;UBERON:0005068,8.74e-15,52;UBERON:0006241,8.74e-15,52;UBERON:0007135,8.74e-15,52;UBERON:0000955,3.95e-13,47;UBERON:0006238,3.95e-13,47;UBERON:0002616,1.59e-12,46;UBERON:0003056,9.77e-12,49;UBERON:0002020,1.45e-11,34;UBERON:0003080,9.81e-11,40;UBERON:0002780,2.25e-10,39;UBERON:0001890,2.25e-10,39;UBERON:0006240,2.25e-10,39;UBERON:0003528,6.86e-10,29;UBERON:0002791,6.86e-10,29;UBERON:0001893,6.86e-10,29;UBERON:0002619,7.74e-08,17;UBERON:0000956,1.08e-07,21;UBERON:0001869,1.08e-07,21;UBERON:0000203,1.08e-07,21;UBERON:0002021,7.91e-07,10;UBERON:0000411,7.91e-07,10;UBERON:0001950,7.91e-07,10 | |||
|phase1_expression=7.04654927261093,2.79180326111489,3.63999391511629,0,0,10.4085148585372,8.64366770203445,6.58528949552039,0.140788722151667,0,0,0,0,0.0874204024189974,0,0,0,0,0.274228867211478,0,14.5424026158329,0,0,12.6394014006791,15.8292403936347,2.8711598205751,3.4460959692726,3.878482188346,0,0,2.21730510655305,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,2.53442328048786,1.46837401729345,1.56478268869608,17.0059621976748,8.78744730937887,22.9427280907654,7.27929392451885,7.18762821824858,0,7.25362142011344,0,3.8588915405392,8.30946975822394,5.15672092277442,3.23706337375356,3.1739458756322,6.33831403506179,3.72728985276045,5.33576877666684,0,0.988866362566974,0,14.081205194365,13.0634223809329,2.7996195323289,2.70011876663381,2.94454945891935,11.4260393761521,7.28866185140325,4.04219637409348,3.1629005436018,2.75765635983006,14.3150645299205,12.6410464704336,11.366883460962,4.48413378282659,3.93396867490361,5.73004707612436,10.6089539620525,13.5063026407603,12.835052813252,11.490514833473,11.6744778255264,3.91438836233131,11.8132861599767,39.2972112555285,18.8411917656091,2.58127163094416,0.679971333707751,0,0,0,8.70755404816862,0,0,0,18.1688011511918,1.28326477414318,0,7.11066703153331,0.432982082022428,0.253359865475099,0.505524445014783,14.5013527243206,2.58937883647172,5.34391700633369,1.21439728736295,2.13125834818499,1.61430848079241,1.65794904607885,3.52766121407114,3.26733137457156,13.8429181931249,2.02439099687876,0.884610551949874,1.94120219936891,0.220841518460394,1.45462575940567,0,5.85561594023094,5.65506108396329,0.255457055208591,0,0,0,8.38827580667007,15.0975198930147,2.89005009859588,15.2965401769203,10.2286182932132,11.4283424507758,11.356888414743,7.73979165262404,1.8661045591514,3.79084137650512,8.20723237957248,5.98554037628437,3.44853156650209,3.42118046630164,1.80845781402858,4.35433594568498,4.22775276940004,4.31027932974753,4.9153640440413,1.72454394346274,5.48407632486676,4.92663147659057,2.84954452155847,3.33656699070717,2.43776516565517,2.67516777330327,5.17489093728082,0,0,0,4.97101854085205,6.56672967947069,4.8616756594474,6.62885259638589,3.93528463494808,4.01094493507183,1.62773761325285,3.75582761959467,1.5179494507732,2.30383789878873,1.64167464079095,2.35099547682982,1.16959989940266,1.53685080703735,1.47627060636409,7.57043814830858,6.5858951922742,0,0.793351699990633,2.98603550749328,1.39342003116263,4.25262622362908,1.81515172161008,1.77902435075896,2.66315876557583,0,1.15289268306808,2.01068167040216,1.59165177632921,1.16978452271472,0,0.648414149624083,0.398282546508734,0.379335801906163,2.62771579002376,4.50830942692322,5.29493452397817,7.5641469995374,17.393683332799,19.2239072857742,60.3725505236573,61.8574987695017,49.1120712408766,0.296452627087149,0.83422552858047,0.786235980452812,0.224862112384854,0,0,0.25462585178142,0.575392274901621,0.486405680325106,0.274561413188081,0,0.372140947668503,1.24815069245824,0.252578877947112,0.538192240565737,0.482443521363367,2.21703828199926,4.54779388249163,4.72598431681875,4.75286240170527,3.52035372432753,0.670025029767263,1.42826184531608,0.975668239288994,2.99506773801763,1.32878813789265,3.02964060449226,1.96635977658886,0.863424909329478,1.44649058581512,0,0.54390568381871,1.47529281905711,4.13905119457099,18.3027672586083,14.2998257642488,1.14754461763673,0.504941854408746,3.78609863299508,2.73307121007647,4.30846795465598,2.86762557543062,4.90157082981267,3.67999490025482,2.02405350837447,3.21481443702443,1.97643888973262,18.315315036043,5.25178315270594,2.84904965867608,5.86393053672874,14.0224604526655,6.63725691699814,3.64170954232472,2.11626489875326,1.88605079755898,0.590603785761546,1.84461088766356,2.58428293168221,3.99887102425256,3.20847640546249,1.8962205476149,2.10837217149998,4.12542172992747,6.46835250932197,4.32146625675145,1.4229455216103,4.07240366560025,4.25616560741457,2.85390108163313,3.78462747384878,1.8267896946876,3.05073220482823,13.3454204644207,2.8668691747145,4.78170133530292,3.06782410722221,2.83470747162333,3.58117032009409,4.76008609260678,0.582961673259701,13.1651964427462,0.170870880797853,1.44470807574256,0.925972636848558,0.188368457004691,0,0,0,0,0.138199973804424,0,4.11236791655476,2.43983360552218,2.48412283890143,3.55450103224597,2.40198820120795,2.29269388854195,2.0663363931334,0.523511883968059,0.259229946583586,5.59205381778233,0.56369293868419,12.4098733216502,10.2584264083401,13.8060343724274,13.1743019947286,14.6991829176977,14.4349403534277,12.2392121753313,13.0025587087881,3.38217769156408,1.44015003128933,0.948033361884535,0.810900861160657,0.616265742988964,0,0.358053391334963,0.39736270956253,0.360586348559907,0.147689527174577,0.504832249740738,0.381034033274999,0.604957110821043,0.877120926657772,0.192423683280659,1.28564592399726,1.81384306892169,0.221985953374065,0,0,2.12508553435409,29.6538311212868,17.948859178192,3.42989406526505,1.50471631210609,19.2015626489803,17.0320337507655,13.1765968091061,13.0608418581203,15.0718154349541,21.9064230243013,16.8755625057951,10.3573876741571,9.9691329976525,15.0150490408028,2.28332164685189,4.38927360741134,3.58540572083682,1.70174701947806,3.14419743941973,1.47074806760011,3.77819437262746,3.09052585858341,1.28367683836726,4.29585259998456,2.28131369901216,3.2066478035633,2.1537546718073,2.30490548657529,3.15895079255873,2.38146845641537,3.36064545240081,1.54327376370964,4.94503080963968,3.23837624295674,2.40008476669791,1.06485483695602,2.86123427936785,2.61623549938191,2.1645157495526,2.79228206042532,2.37806364734604,3.15683653725411,2.03706170768793,3.92799590160417,2.84724043498018,2.75812550651578,1.63692417267876,2.78886314134739,1.35034627686799,3.99696924700713,2.8071793013449,4.08255002691767,2.86932498103265,2.20591419119516,2.08681052058379 | |||
|short_description=p1@Itgb8 | |||
}} |
Latest revision as of 11:04, 26 September 2015
Short description: | p1@Itgb8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Itgb8_5end |
Coexpression cluster: | MCL_coexpression_mm9:11 |
Association with transcript: | 0bp_to_ENSMUST00000026360, ENSMUST00000151023_5end |
EntrezGene: | Itgb8 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.40e-09 | 44 |
neurectodermal cell | 1.40e-09 | 44 |
neural cell | 4.79e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.57e-23 | 95 |
ectoderm | 4.57e-23 | 95 |
presumptive ectoderm | 4.57e-23 | 95 |
nervous system | 3.64e-20 | 75 |
central nervous system | 5.64e-19 | 73 |
ecto-epithelium | 4.36e-17 | 73 |
neurectoderm | 5.50e-16 | 64 |
neural plate | 5.50e-16 | 64 |
presumptive neural plate | 5.50e-16 | 64 |
regional part of nervous system | 9.33e-16 | 54 |
structure with developmental contribution from neural crest | 1.53e-15 | 92 |
neural tube | 8.74e-15 | 52 |
neural rod | 8.74e-15 | 52 |
future spinal cord | 8.74e-15 | 52 |
neural keel | 8.74e-15 | 52 |
brain | 3.95e-13 | 47 |
future brain | 3.95e-13 | 47 |
regional part of brain | 1.59e-12 | 46 |
pre-chordal neural plate | 9.77e-12 | 49 |
gray matter | 1.45e-11 | 34 |
anterior neural tube | 9.81e-11 | 40 |
regional part of forebrain | 2.25e-10 | 39 |
forebrain | 2.25e-10 | 39 |
future forebrain | 2.25e-10 | 39 |
brain grey matter | 6.86e-10 | 29 |
regional part of telencephalon | 6.86e-10 | 29 |
telencephalon | 6.86e-10 | 29 |
regional part of cerebral cortex | 7.74e-08 | 17 |
cerebral cortex | 1.08e-07 | 21 |
cerebral hemisphere | 1.08e-07 | 21 |
pallium | 1.08e-07 | 21 |
occipital lobe | 7.91e-07 | 10 |
visual cortex | 7.91e-07 | 10 |
neocortex | 7.91e-07 | 10 |