FFCP PHASE1:Mm9::chr2:37307736..37307750,+: Difference between revisions
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{{FFCP|EntrezGene=227800|HGNC=|UniProt=A2AWA9,A2AWB0|association_with_transcript=-14bp_to_ENSMUST00000066055,ENSMUST00000148470_5end|description=CAGE_peak_4_at_Rabgap1_5end|id=chr2:37307736..37307750,+|ontology_enrichment_celltype=CL:0000540!9.22e-13!33;CL:0000047!9.22e-13!33;CL:0000031!9.22e-13!33;CL:0000404!9.22e-13!33;CL:0000393!2.40e-10!39;CL:0000211!2.40e-10!39;CL:0000117!3.59e-10!23;CL:0000337!3.59e-10!23;CL:0000221!5.80e-07!44;CL:0000133!5.80e-07!44;CL:0002319!6.60e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,7.72e-14,33;CL:0000047,7.72e-14,33;CL:0000031,7.72e-14,33;CL:0000404,7.72e-14,33;CL:0000117,6.61e-12,23;CL:0000337,6.61e-12,23;CL:0000393,2.79e-10,39;CL:0000211,2.79e-10,39;CL:0000221,2.62e-09,44;CL:0000133,2.62e-09,44;CL:0002319,3.02e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.26e-12!75;UBERON:0001016!1.26e-12!75;UBERON:0001017!4.08e-12!73;UBERON:0005743!4.08e-12!73;UBERON:0004121!1.66e-11!102;UBERON:0000924!1.66e-11!102;UBERON:0006601!1.66e-11!102;UBERON:0002346!1.31e-10!71;UBERON:0003075!1.31e-10!71;UBERON:0007284!1.31e-10!71;UBERON:0001049!1.15e-09!52;UBERON:0005068!1.15e-09!52;UBERON:0006241!1.15e-09!52;UBERON:0007135!1.15e-09!52;UBERON:0003056!1.48e-09!49;UBERON:0000033!2.73e-09!63;UBERON:0002020!4.37e-09!34;UBERON:0002616!1.38e-08!49;UBERON:0000955!2.63e-08!50;UBERON:0006238!2.63e-08!50;UBERON:0002780!6.64e-08!39;UBERON:0001890!6.64e-08!39;UBERON:0006240!6.64e-08!39;UBERON:0003080!6.78e-08!40;UBERON:0002791!3.45e-07!29;UBERON:0003528!3.45e-07!29;UBERON:0001893!3.45e-07!29;UBERON:0000153!5.74e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.74e-15,75;UBERON:0001017,7.37e-15,73;UBERON:0002346,8.64e-15,64;UBERON:0003075,8.64e-15,64;UBERON:0007284,8.64e-15,64;UBERON:0004121,1.62e-14,95;UBERON:0000924,1.62e-14,95;UBERON:0006601,1.62e-14,95;UBERON:0000073,4.54e-13,54;UBERON:0010371,3.06e-12,73;UBERON:0001049,4.18e-12,52;UBERON:0005068,4.18e-12,52;UBERON:0006241,4.18e-12,52;UBERON:0007135,4.18e-12,52;UBERON:0002020,7.88e-12,34;UBERON:0003056,3.54e-11,49;UBERON:0002616,1.10e-09,46;UBERON:0003528,1.83e-09,29;UBERON:0002791,1.83e-09,29;UBERON:0001893,1.83e-09,29;UBERON:0002780,2.97e-09,39;UBERON:0001890,2.97e-09,39;UBERON:0006240,2.97e-09,39;UBERON:0003080,3.04e-09,40;UBERON:0000955,3.35e-09,47;UBERON:0006238,3.35e-09,47;UBERON:0010314,6.80e-09,92;UBERON:0000956,1.96e-08,21;UBERON:0001869,1.96e-08,21;UBERON:0000203,1.96e-08,21|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,0.16787927191189,0.467225281191051,0.774739940649458,0.422366166455,0.936258105287974,1.19852577757853,0.558405112967355,0.513602189793617,0.262261207256992,0.333109761815663,0.202475267389826,0.699561878128147,1.10411757875383,1.64537320326887,0,3.06155844543851,0.297872853602656,1.04479915655574,0.159992422793407,0.68822784320151,0,0.430761996159075,0.215471232685889,0,0.756090389279792,0.665191531965914,0.635030673459631,0.61506478758457,0,0,0.997407872150954,1.22501613757421,0,0.7813353445238,0,1.17646297606203,0,0,0.881277725829041,0.608261587317087,0.917733760808408,0,0,0,0,0.419959264876088,0,0.838913030288682,1.45072428402269,1.68046899571232,0.514518872071894,0.286533439938757,1.03134418455488,2.42779753031517,2.64495489636016,1.90149421051854,0.338844532069132,0,0,0,0,0,0.384218305321555,3.7328260431052,2.8351247049655,3.78584930432488,2.57085885963423,1.10434270475807,3.06226998037385,2.68367318851062,3.67687514644008,1.10115880999389,2.17068474744819,2.15049146558741,3.29715719325485,3.20206752608434,1.56274011167028,1.3959149950069,0.56276261003168,1.06958773443767,2.06240009831567,2.56269025438385,2.23679334990361,1.36307147999731,1.66257432234928,1.44932244350839,0,0,0,0,0.448026887097336,0.421333260395256,0.852151612890289,0.259786004602869,0,1.12674735821344,0,0,0,0,1.01343946190039,0,0.5709193985953,1.8125651855302,0.742210695324124,1.04091196059682,0.304465478312141,0.461230994512117,0.753613202763113,1.05829836422134,0.502666365318702,0.988779870937496,0.86759614151947,1.76922110389975,0.323533699894818,0.441683036920787,0.969750506270444,0,2.34224637609238,2.30391377494801,0,0.239630249011841,0,0.635351135365324,1.04853447583376,0,2.38743269014442,1.56441888173049,1.79000820131231,2.70124457927428,0.973447578406546,1.62942982160506,1.36847667671102,1.51633655060205,0.210441855886474,1.17108398666433,1.83921683546778,2.16074555766419,2.10986744970001,2.38127747029647,1.7935920839879,1.78033276663485,0.776110112217047,0.862271971731369,2.26927296201383,1.23165786914764,0.657587197282725,0.834141747676794,1.39300866608867,0.61734640922383,0.59710280045548,0,0.257347907114715,0.284163499395593,1.44988040774851,0.938104239924385,1.44049649168812,0.946978942340841,1.18058539048442,0.771335564436891,1.39520366850245,0.804820204198858,1.16765342367169,0.329119699826961,0.656669856316381,0.972825714550269,0.730999937126662,1.3173006917463,0.671032093801859,1.47202963994889,2.05809224758569,0.330418782983798,0,1.706306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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=227800 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=A2AWA9,A2AWB0 | |||
|association_with_transcript=-14bp_to_ENSMUST00000066055,ENSMUST00000148470_5end | |||
|cluster_id=chr2:37307736..37307750,+ | |||
|description=CAGE_peak_4_at_Rabgap1_5end | |||
|id=chr2:37307736..37307750,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.22e-13!33;CL:0000047!9.22e-13!33;CL:0000031!9.22e-13!33;CL:0000404!9.22e-13!33;CL:0000393!2.40e-10!39;CL:0000211!2.40e-10!39;CL:0000117!3.59e-10!23;CL:0000337!3.59e-10!23;CL:0000221!5.80e-07!44;CL:0000133!5.80e-07!44;CL:0002319!6.60e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.72e-14,33;CL:0000047,7.72e-14,33;CL:0000031,7.72e-14,33;CL:0000404,7.72e-14,33;CL:0000117,6.61e-12,23;CL:0000337,6.61e-12,23;CL:0000393,2.79e-10,39;CL:0000211,2.79e-10,39;CL:0000221,2.62e-09,44;CL:0000133,2.62e-09,44;CL:0002319,3.02e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.26e-12!75;UBERON:0001016!1.26e-12!75;UBERON:0001017!4.08e-12!73;UBERON:0005743!4.08e-12!73;UBERON:0004121!1.66e-11!102;UBERON:0000924!1.66e-11!102;UBERON:0006601!1.66e-11!102;UBERON:0002346!1.31e-10!71;UBERON:0003075!1.31e-10!71;UBERON:0007284!1.31e-10!71;UBERON:0001049!1.15e-09!52;UBERON:0005068!1.15e-09!52;UBERON:0006241!1.15e-09!52;UBERON:0007135!1.15e-09!52;UBERON:0003056!1.48e-09!49;UBERON:0000033!2.73e-09!63;UBERON:0002020!4.37e-09!34;UBERON:0002616!1.38e-08!49;UBERON:0000955!2.63e-08!50;UBERON:0006238!2.63e-08!50;UBERON:0002780!6.64e-08!39;UBERON:0001890!6.64e-08!39;UBERON:0006240!6.64e-08!39;UBERON:0003080!6.78e-08!40;UBERON:0002791!3.45e-07!29;UBERON:0003528!3.45e-07!29;UBERON:0001893!3.45e-07!29;UBERON:0000153!5.74e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.74e-15,75;UBERON:0001017,7.37e-15,73;UBERON:0002346,8.64e-15,64;UBERON:0003075,8.64e-15,64;UBERON:0007284,8.64e-15,64;UBERON:0004121,1.62e-14,95;UBERON:0000924,1.62e-14,95;UBERON:0006601,1.62e-14,95;UBERON:0000073,4.54e-13,54;UBERON:0010371,3.06e-12,73;UBERON:0001049,4.18e-12,52;UBERON:0005068,4.18e-12,52;UBERON:0006241,4.18e-12,52;UBERON:0007135,4.18e-12,52;UBERON:0002020,7.88e-12,34;UBERON:0003056,3.54e-11,49;UBERON:0002616,1.10e-09,46;UBERON:0003528,1.83e-09,29;UBERON:0002791,1.83e-09,29;UBERON:0001893,1.83e-09,29;UBERON:0002780,2.97e-09,39;UBERON:0001890,2.97e-09,39;UBERON:0006240,2.97e-09,39;UBERON:0003080,3.04e-09,40;UBERON:0000955,3.35e-09,47;UBERON:0006238,3.35e-09,47;UBERON:0010314,6.80e-09,92;UBERON:0000956,1.96e-08,21;UBERON:0001869,1.96e-08,21;UBERON:0000203,1.96e-08,21 | |||
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| |||
|short_description=p4@Rabgap1 | |||
}} |
Latest revision as of 16:25, 26 September 2015
Short description: | p4@Rabgap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rabgap1_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENSMUST00000066055, ENSMUST00000148470_5end |
EntrezGene: | Rabgap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.72e-14 | 33 |
neuronal stem cell | 7.72e-14 | 33 |
neuroblast | 7.72e-14 | 33 |
electrically signaling cell | 7.72e-14 | 33 |
CNS neuron (sensu Vertebrata) | 6.61e-12 | 23 |
neuroblast (sensu Vertebrata) | 6.61e-12 | 23 |
electrically responsive cell | 2.79e-10 | 39 |
electrically active cell | 2.79e-10 | 39 |
ectodermal cell | 2.62e-09 | 44 |
neurectodermal cell | 2.62e-09 | 44 |
neural cell | 3.02e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.74e-15 | 75 |
central nervous system | 7.37e-15 | 73 |
neurectoderm | 8.64e-15 | 64 |
neural plate | 8.64e-15 | 64 |
presumptive neural plate | 8.64e-15 | 64 |
ectoderm-derived structure | 1.62e-14 | 95 |
ectoderm | 1.62e-14 | 95 |
presumptive ectoderm | 1.62e-14 | 95 |
regional part of nervous system | 4.54e-13 | 54 |
ecto-epithelium | 3.06e-12 | 73 |
neural tube | 4.18e-12 | 52 |
neural rod | 4.18e-12 | 52 |
future spinal cord | 4.18e-12 | 52 |
neural keel | 4.18e-12 | 52 |
gray matter | 7.88e-12 | 34 |
pre-chordal neural plate | 3.54e-11 | 49 |
regional part of brain | 1.10e-09 | 46 |
brain grey matter | 1.83e-09 | 29 |
regional part of telencephalon | 1.83e-09 | 29 |
telencephalon | 1.83e-09 | 29 |
regional part of forebrain | 2.97e-09 | 39 |
forebrain | 2.97e-09 | 39 |
future forebrain | 2.97e-09 | 39 |
anterior neural tube | 3.04e-09 | 40 |
brain | 3.35e-09 | 47 |
future brain | 3.35e-09 | 47 |
structure with developmental contribution from neural crest | 6.80e-09 | 92 |
cerebral cortex | 1.96e-08 | 21 |
cerebral hemisphere | 1.96e-08 | 21 |
pallium | 1.96e-08 | 21 |