FFCP PHASE1:Mm9::chr9:55889818..55889840,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=26611 | |EntrezGene=26611 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=417 | |MCL_coexpression_id=417 | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=126bp_to_ENSMUST00000144869_5end | |association_with_transcript=126bp_to_ENSMUST00000144869_5end | ||
|cluster_id=chr9:55889818..55889840,+ | |||
|description=CAGE_peak_2_at_Rcn2_5end | |description=CAGE_peak_2_at_Rcn2_5end | ||
|id=chr9:55889818..55889840,+ | |id=chr9:55889818..55889840,+ | ||
|ontology_enrichment_celltype=CL:0000393!2.23e-15!39;CL:0000211!2.23e-15!39;CL:0000055!3.97e-15!50;CL:0000221!3.29e-13!44;CL:0000133!3.29e-13!44;CL:0002319!4.34e-13!43;CL:0000540!2.19e-12!33;CL:0000047!2.19e-12!33;CL:0000031!2.19e-12!33;CL:0000404!2.19e-12!33;CL:0000117!1.26e-08!23;CL:0000337!1.26e-08!23;CL:0002321!3.90e-07!70;CL:0000220!3.90e-07!70 | |ontology_enrichment_celltype=CL:0000393!2.23e-15!39;CL:0000211!2.23e-15!39;CL:0000055!3.97e-15!50;CL:0000221!3.29e-13!44;CL:0000133!3.29e-13!44;CL:0002319!4.34e-13!43;CL:0000540!2.19e-12!33;CL:0000047!2.19e-12!33;CL:0000031!2.19e-12!33;CL:0000404!2.19e-12!33;CL:0000117!1.26e-08!23;CL:0000337!1.26e-08!23;CL:0002321!3.90e-07!70;CL:0000220!3.90e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.11e-15,39;CL:0000211,2.11e-15,39;CL:0000221,3.14e-13,44;CL:0000133,3.14e-13,44;CL:0002319,4.15e-13,43;CL:0000540,2.09e-12,33;CL:0000047,2.09e-12,33;CL:0000031,2.09e-12,33;CL:0000404,2.09e-12,33;CL:0000117,1.22e-08,23;CL:0000337,1.22e-08,23;CL:0002321,2.80e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.19e-17!73;UBERON:0005743!9.19e-17!73;UBERON:0000073!3.24e-16!75;UBERON:0001016!3.24e-16!75;UBERON:0004121!6.49e-13!102;UBERON:0000924!6.49e-13!102;UBERON:0006601!6.49e-13!102;UBERON:0002346!3.42e-11!71;UBERON:0003075!3.42e-11!71;UBERON:0007284!3.42e-11!71;UBERON:0001049!6.24e-10!52;UBERON:0005068!6.24e-10!52;UBERON:0006241!6.24e-10!52;UBERON:0007135!6.24e-10!52;UBERON:0000033!6.13e-09!63;UBERON:0002020!3.09e-08!34;UBERON:0000955!3.49e-08!50;UBERON:0006238!3.49e-08!50;UBERON:0003056!4.14e-08!49;UBERON:0002616!8.09e-08!49;UBERON:0003080!4.14e-07!40;UBERON:0004111!5.01e-07!122;UBERON:0002780!5.33e-07!39;UBERON:0001890!5.33e-07!39;UBERON:0006240!5.33e-07!39;UBERON:0000025!5.69e-07!114 | |ontology_enrichment_uberon=UBERON:0001017!9.19e-17!73;UBERON:0005743!9.19e-17!73;UBERON:0000073!3.24e-16!75;UBERON:0001016!3.24e-16!75;UBERON:0004121!6.49e-13!102;UBERON:0000924!6.49e-13!102;UBERON:0006601!6.49e-13!102;UBERON:0002346!3.42e-11!71;UBERON:0003075!3.42e-11!71;UBERON:0007284!3.42e-11!71;UBERON:0001049!6.24e-10!52;UBERON:0005068!6.24e-10!52;UBERON:0006241!6.24e-10!52;UBERON:0007135!6.24e-10!52;UBERON:0000033!6.13e-09!63;UBERON:0002020!3.09e-08!34;UBERON:0000955!3.49e-08!50;UBERON:0006238!3.49e-08!50;UBERON:0003056!4.14e-08!49;UBERON:0002616!8.09e-08!49;UBERON:0003080!4.14e-07!40;UBERON:0004111!5.01e-07!122;UBERON:0002780!5.33e-07!39;UBERON:0001890!5.33e-07!39;UBERON:0006240!5.33e-07!39;UBERON:0000025!5.69e-07!114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.65e-17,73;UBERON:0001016,3.05e-16,75;UBERON:0004121,6.77e-14,95;UBERON:0000924,6.77e-14,95;UBERON:0006601,6.77e-14,95;UBERON:0010314,4.54e-13,92;UBERON:0002346,1.75e-12,64;UBERON:0003075,1.75e-12,64;UBERON:0007284,1.75e-12,64;UBERON:0010371,7.30e-11,73;UBERON:0000073,4.59e-10,54;UBERON:0001049,6.04e-10,52;UBERON:0005068,6.04e-10,52;UBERON:0006241,6.04e-10,52;UBERON:0007135,6.04e-10,52;UBERON:0002020,3.01e-08,34;UBERON:0003056,4.03e-08,49;UBERON:0000955,8.48e-08,47;UBERON:0006238,8.48e-08,47;UBERON:0002616,1.96e-07,46;UBERON:0003080,4.05e-07,40;UBERON:0002780,5.22e-07,39;UBERON:0001890,5.22e-07,39;UBERON:0006240,5.22e-07,39;UBERON:0004111,5.61e-07,122;UBERON:0000025,6.39e-07,114 | |||
|phase1_expression=24.9832201483479,0,0,0,0,0.671517087647559,0.467225281191051,1.29123323441576,2.81577444303333,3.97909694747389,1.36974374580404,1.43589886191606,0.684802919724823,1.22388563386596,0.333109761815663,0.809901069559304,0,0.315462165358238,0,0.84877930359606,5.01755411891312,4.46809280403984,7.57479388502913,0.799962113967033,0.45881856213434,0,0.430761996159075,0.215471232685889,0.190023419456374,0.252030129759931,1.10865255327652,0.635030673459631,1.23012957516914,0,0,0.997407872150954,0.204169356262369,0,0,0,0,0,0,36.635974030893,35.6846797892691,30.6523076110008,12.5182615095686,27.6891948603167,18.6733255324301,18.4708404120569,20.4380175573029,12.9377307928474,0.335565212115473,2.17608642603403,1.00828139742739,20.8380143189117,26.9341433542431,17.532851137433,23.8733423814325,23.8045940672415,26.6209189472595,10.8430250262122,10.6715375533337,1.7997994345628,0.988866362566974,2.1314403448383,16.1784059679939,20.7477884873639,27.8925057109805,19.9808788730902,25.86997024622,32.2785612376298,30.7007271922743,21.435889862617,25.1115134067779,17.4651569455904,13.2139057199266,18.5146640223522,17.050325191443,24.1351906546255,18.9379422256988,23.962015045611,18.1468949350898,11.2552522006336,15.7382195210114,25.6326869362091,27.0506193518296,22.1815340532108,6.6639050133202,6.95258352982427,6.37701875143691,0.860423876981386,2.03991400112325,1.07940638327563,1.94932925234301,0,2.24711072210803,17.0430322578058,20.7828803682295,28.9738451098479,16.3378366940949,29.5150898052931,35.6727335589304,56.8853362522665,3.24736561516821,3.29367825117628,6.0662933401774,1.59857431606684,1.55362730188303,2.52351636410202,18.5629299639765,7.00270600117925,8.76338889573022,7.38540938707851,10.5829836422134,3.76999773989026,1.73036477414062,4.48258006451726,0,21.0296904931632,3.75430581382669,4.363877278217,0,9.66176630138106,7.12118803165747,2.04365644166873,1.7972268675888,0.599902730993408,1.77898317902291,15.7280171375064,11.4375150704657,13.8219787324151,8.8650403298061,11.5071955798649,13.0906468072523,17.6842976743856,31.2646847020471,8.58408097209642,6.82351447770922,2.94618598241064,21.7301139747715,25.0593293832485,29.1700650284666,19.7423311364787,15.988577300562,13.9643955110486,14.8048724804372,4.13925393182425,23.4969112296798,28.5550181053407,27.9762287420679,31.7833812019983,28.360819421011,24.3776516565517,22.6360350048738,25.2773518859486,0.702213187313235,1.28673953557358,0.852490498186778,21.7482061162277,20.6382932783365,22.3276956211658,23.4377288229358,14.7573173810553,17.4321837562737,13.9520366850245,13.6819434713806,10.1585847859437,12.8356682932515,11.8200574136949,4.9451973822972,5.11699955988663,5.48875288227627,2.95254121272818,12.8276868624118,18.4199256158919,0.330418782983798,1.32225283331772,25.8078783147633,24.1526138734856,18.4280469690593,13.9161631990106,10.8965241483986,10.8428606884159,4.74529061544512,5.27036655116835,5.02670417600539,7.95825888164603,5.26403035221624,4.49409704327111,1.94524244887225,1.99141273254367,22.5704802134167,20.3362352445317,21.4144697778853,14.255592949172,12.8008641530633,14.3778430775153,8.41045943752622,2.06654207171443,3.29697328466887,2.59134044235781,1.1858105083486,5.17219827719892,4.71741588271687,1.79889689907883,1.62288097110802,0.964708639009667,1.52775511068852,1.72617682470486,2.2698931748505,3.0201755450689,1.43768206527355,6.32639611036456,3.74445207737473,3.03094653536534,1.61457672169721,1.4473305640901,2.58654466233247,34.8664197657692,31.9411353826371,26.6499784667045,26.5199980566007,19.5982321206924,12.8543566078447,12.4885534628991,23.1723661836101,21.2606102062824,21.0480294627883,5.40748938561935,6.73471429276993,5.64131328467895,1.50791283939272,0.54390568381871,2.45882136509518,2.48343071674259,15.0917554588524,16.8784828692773,41.6394761256756,3.7870639080656,29.6577726251281,26.5498346121714,25.2045375347375,21.9851294116348,18.2694912747563,21.2307398091624,17.8116708736954,19.5811424800579,24.1125544547379,24.0990987316355,13.9101283504103,19.9433476107326,21.0124177566113,11.5479086080775,3.98235415019888,11.1679092631291,13.9068836203785,6.22396763194464,6.20133975049623,7.68587869859819,8.5281336745513,7.99774204850512,8.55593708123331,2.52829406348653,0,3.09406629744561,2.38307724027652,27.0091641046965,16.1698354728443,21.4337035031592,24.8276327099183,18.0152505778091,17.2776471632227,6.08929898229199,2.81606049676452,2.54198485036584,34.1819016985191,2.4732937941222,11.7869031488011,8.14224486530104,5.13301079213487,4.10352249362653,2.91480836629851,20.3967832211561,0.854354403989263,15.4790150972417,10.926477114813,1.50694765603753,1.0935538217682,0.686334519619568,3.56954702987096,5.45810664062266,3.73139929271944,4.77335309007557,27.9957354319305,19.5186688441775,19.6569720295678,15.6816222010852,12.6650286972783,14.295620716791,12.3980183588004,6.28214260761671,1.68499465279331,1.24267862617385,1.12738587736838,26.0158790116523,19.3586433834804,22.5563378479095,18.3406949338378,26.1881994510706,1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| ||
|short_description=p2@Rcn2 | |short_description=p2@Rcn2 | ||
}} | }} |
Latest revision as of 20:56, 26 September 2015
Short description: | p2@Rcn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rcn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:417 |
Association with transcript: | 126bp_to_ENSMUST00000144869_5end |
EntrezGene: | Rcn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.11e-15 | 39 |
electrically active cell | 2.11e-15 | 39 |
ectodermal cell | 3.14e-13 | 44 |
neurectodermal cell | 3.14e-13 | 44 |
neural cell | 4.15e-13 | 43 |
neuron | 2.09e-12 | 33 |
neuronal stem cell | 2.09e-12 | 33 |
neuroblast | 2.09e-12 | 33 |
electrically signaling cell | 2.09e-12 | 33 |
CNS neuron (sensu Vertebrata) | 1.22e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-08 | 23 |
embryonic cell | 2.80e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.65e-17 | 73 |
nervous system | 3.05e-16 | 75 |
ectoderm-derived structure | 6.77e-14 | 95 |
ectoderm | 6.77e-14 | 95 |
presumptive ectoderm | 6.77e-14 | 95 |
structure with developmental contribution from neural crest | 4.54e-13 | 92 |
neurectoderm | 1.75e-12 | 64 |
neural plate | 1.75e-12 | 64 |
presumptive neural plate | 1.75e-12 | 64 |
ecto-epithelium | 7.30e-11 | 73 |
regional part of nervous system | 4.59e-10 | 54 |
neural tube | 6.04e-10 | 52 |
neural rod | 6.04e-10 | 52 |
future spinal cord | 6.04e-10 | 52 |
neural keel | 6.04e-10 | 52 |
gray matter | 3.01e-08 | 34 |
pre-chordal neural plate | 4.03e-08 | 49 |
brain | 8.48e-08 | 47 |
future brain | 8.48e-08 | 47 |
regional part of brain | 1.96e-07 | 46 |
anterior neural tube | 4.05e-07 | 40 |
regional part of forebrain | 5.22e-07 | 39 |
forebrain | 5.22e-07 | 39 |
future forebrain | 5.22e-07 | 39 |
anatomical conduit | 5.61e-07 | 122 |
tube | 6.39e-07 | 114 |