FFCP PHASE1:Mm9::chr1:196446009..196446027,+: Difference between revisions
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{{FFCP|EntrezGene=18845|HGNC=|MCL_coexpression_id=3092|UniProt=P70207|association_with_transcript=0bp_to_ENSMUST00000027952,NM_008882,uc007een.1_5end|description=CAGE_peak_1_at_Plxna2_5end|id=chr1:196446009..196446027,+|ontology_enrichment_celltype=CL:0000117!1.05e-07!23;CL:0000337!1.05e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-07,23;CL:0000337,1.04e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.63e-12!34;UBERON:0001049!2.88e-11!52;UBERON:0005068!2.88e-11!52;UBERON:0006241!2.88e-11!52;UBERON:0007135!2.88e-11!52;UBERON:0002791!1.87e-09!29;UBERON:0003528!1.87e-09!29;UBERON:0001893!1.87e-09!29;UBERON:0003056!3.32e-09!49;UBERON:0000025!8.80e-09!114;UBERON:0002780!1.24e-08!39;UBERON:0001890!1.24e-08!39;UBERON:0006240!1.24e-08!39;UBERON:0000033!1.25e-08!63;UBERON:0003080!1.74e-08!40;UBERON:0000955!2.85e-08!50;UBERON:0006238!2.85e-08!50;UBERON:0002616!3.20e-08!49;UBERON:0000956!6.85e-08!21;UBERON:0001869!6.85e-08!21;UBERON:0000203!6.85e-08!21;UBERON:0004111!7.36e-08!122;UBERON:0001017!1.30e-07!73;UBERON:0005743!1.30e-07!73;UBERON:0002346!1.44e-07!71;UBERON:0003075!1.44e-07!71;UBERON:0007284!1.44e-07!71;UBERON:0000468!3.02e-07!333;UBERON:0000073!3.73e-07!75;UBERON:0001016!3.73e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.55e-12,34;UBERON:0001049,2.85e-11,52;UBERON:0005068,2.85e-11,52;UBERON:0006241,2.85e-11,52;UBERON:0007135,2.85e-11,52;UBERON:0002346,1.61e-10,64;UBERON:0003075,1.61e-10,64;UBERON:0007284,1.61e-10,64;UBERON:0010371,1.61e-10,73;UBERON:0000073,2.45e-10,54;UBERON:0003528,1.86e-09,29;UBERON:0002791,1.86e-09,29;UBERON:0001893,1.86e-09,29;UBERON:0003056,3.29e-09,49;UBERON:0000955,4.81e-09,47;UBERON:0006238,4.81e-09,47;UBERON:0002616,5.30e-09,46;UBERON:0000025,8.74e-09,114;UBERON:0002780,1.23e-08,39;UBERON:0001890,1.23e-08,39;UBERON:0006240,1.23e-08,39;UBERON:0003080,1.73e-08,40;UBERON:0004121,2.28e-08,95;UBERON:0000924,2.28e-08,95;UBERON:0006601,2.28e-08,95;UBERON:0000956,6.81e-08,21;UBERON:0001869,6.81e-08,21;UBERON:0000203,6.81e-08,21;UBERON:0004111,7.31e-08,122;UBERON:0001017,1.30e-07,73;UBERON:0010314,3.29e-07,92;UBERON:0001016,3.70e-07,75|phase1_expression=19.8584570409945,117.953687782104,87.3598539627909,98.6033328860266,67.6209235427569,31.5613031194353,30.1360306368228,0,0,0.234064526321993,0,0,0,0,1.33243904726265,1.82227740650843,0,0,0.137114433605739,0,15.1377056468904,0,0.522399578277871,23.6788785734242,19.9586074528438,60.2943562320771,42.2146756235893,43.7406602352355,26.0332084655232,15.6258680451157,21.9513205548752,2.54012269383853,1.84519436275371,0,15.3091358468176,10.805251948302,14.7001936508906,0,0,0,0.588231488031014,0,0,12.4637849795822,10.9487085717076,9.17733760808408,216.722402384407,28.5612954858385,20.8701873597748,42.1912880991195,87.9114727807277,18.6878333674463,0,0,0,59.1696702882678,64.1834905462815,80.9605184875584,38.8447604850428,51.3121249893872,51.9741750875067,67.7689064138264,84.4830056305582,10.7987966073768,12.8552627133707,5.6838409195688,20.0732074047331,15.3687322128622,197.321332223033,187.523248342718,181.300116684891,43.4189496293781,53.4501869102905,172.222063696225,196.483215587385,219.693289999795,16.5173821499083,15.4501679083077,17.3575382579555,81.5057258172598,75.5687936155904,79.1788323246275,15.9134309430787,24.7615548413939,24.2949213965128,82.4960039326269,74.745132419529,124.328430365475,10.9802980333117,15.492169821891,33.6242806893946,32.6961073252927,19.7191686775248,36.6998170313716,42.8852435515462,21.0572636935748,13.0613310722529,10.7371103224176,5.19572009205738,8.48014978824817,16.3378366940949,162.974626316184,560.571527354621,462.193357049665,3.030874574157,2.28023878927589,2.02209778005913,11.3042040921869,7.25026074212081,7.42210695324124,10.4091196059682,11.5696881758614,4.38169444786511,5.27529241934179,6.46737889246376,4.52399728786832,23.2363269670311,17.930320258069,9.73071607144862,17.1472860944254,19.654895142975,26.6681389224372,31.6865994070808,24.59358694897,21.9919042154128,36.7858159500372,0.11981512450592,0,0.635351135365324,20.8208988772704,37.972550033946,95.3716532536641,36.3292829201858,41.4259040875135,18.7009240103604,24.6606719862992,14.4611896667449,22.5176616804268,4.29628689337247,18.0979996062368,16.6554166992261,14.4838325793088,21.6074555766419,31.0451924741573,47.8296589033835,65.5942247858431,59.0320864726292,54.0690044844543,4.52692785158969,13.2374256117473,18.2989169130507,16.6588756644957,20.8535436919198,25.4224081561182,28.3979348242962,42.1952645655206,0,0.257347907114715,0.284163499395593,18.2270679831242,21.1073453982987,19.9868888221726,19.8865577891577,15.7411385397923,14.8096428371883,16.7424440220294,14.7550370769791,16.4639132737709,17.4433440908289,16.9092488001468,19.8618583387347,25.2925978245825,20.1986106067767,19.7283435577747,19.5569652164638,100.949424744078,159.261853398191,24.5939026997096,47.3499916188219,27.4039272795317,18.5569144303814,17.9498336914775,20.6811580775729,15.97895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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18845 | |||
|HGNC= | |||
|MCL_coexpression_id=3092 | |||
|TSSclassifier=NA | |||
|UniProt=P70207 | |||
|association_with_transcript=0bp_to_ENSMUST00000027952,NM_008882,uc007een.1_5end | |||
|cluster_id=chr1:196446009..196446027,+ | |||
|description=CAGE_peak_1_at_Plxna2_5end | |||
|id=chr1:196446009..196446027,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.05e-07!23;CL:0000337!1.05e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-07,23;CL:0000337,1.04e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.63e-12!34;UBERON:0001049!2.88e-11!52;UBERON:0005068!2.88e-11!52;UBERON:0006241!2.88e-11!52;UBERON:0007135!2.88e-11!52;UBERON:0002791!1.87e-09!29;UBERON:0003528!1.87e-09!29;UBERON:0001893!1.87e-09!29;UBERON:0003056!3.32e-09!49;UBERON:0000025!8.80e-09!114;UBERON:0002780!1.24e-08!39;UBERON:0001890!1.24e-08!39;UBERON:0006240!1.24e-08!39;UBERON:0000033!1.25e-08!63;UBERON:0003080!1.74e-08!40;UBERON:0000955!2.85e-08!50;UBERON:0006238!2.85e-08!50;UBERON:0002616!3.20e-08!49;UBERON:0000956!6.85e-08!21;UBERON:0001869!6.85e-08!21;UBERON:0000203!6.85e-08!21;UBERON:0004111!7.36e-08!122;UBERON:0001017!1.30e-07!73;UBERON:0005743!1.30e-07!73;UBERON:0002346!1.44e-07!71;UBERON:0003075!1.44e-07!71;UBERON:0007284!1.44e-07!71;UBERON:0000468!3.02e-07!333;UBERON:0000073!3.73e-07!75;UBERON:0001016!3.73e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.55e-12,34;UBERON:0001049,2.85e-11,52;UBERON:0005068,2.85e-11,52;UBERON:0006241,2.85e-11,52;UBERON:0007135,2.85e-11,52;UBERON:0002346,1.61e-10,64;UBERON:0003075,1.61e-10,64;UBERON:0007284,1.61e-10,64;UBERON:0010371,1.61e-10,73;UBERON:0000073,2.45e-10,54;UBERON:0003528,1.86e-09,29;UBERON:0002791,1.86e-09,29;UBERON:0001893,1.86e-09,29;UBERON:0003056,3.29e-09,49;UBERON:0000955,4.81e-09,47;UBERON:0006238,4.81e-09,47;UBERON:0002616,5.30e-09,46;UBERON:0000025,8.74e-09,114;UBERON:0002780,1.23e-08,39;UBERON:0001890,1.23e-08,39;UBERON:0006240,1.23e-08,39;UBERON:0003080,1.73e-08,40;UBERON:0004121,2.28e-08,95;UBERON:0000924,2.28e-08,95;UBERON:0006601,2.28e-08,95;UBERON:0000956,6.81e-08,21;UBERON:0001869,6.81e-08,21;UBERON:0000203,6.81e-08,21;UBERON:0004111,7.31e-08,122;UBERON:0001017,1.30e-07,73;UBERON:0010314,3.29e-07,92;UBERON:0001016,3.70e-07,75 | |||
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| |||
|short_description=p1@Plxna2 | |||
}} |
Latest revision as of 00:44, 27 September 2015
Short description: | p1@Plxna2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Plxna2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3092 |
Association with transcript: | 0bp_to_ENSMUST00000027952, NM_008882, uc007een.1_5end |
EntrezGene: | Plxna2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.04e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
gray matter | 7.55e-12 | 34 |
neural tube | 2.85e-11 | 52 |
neural rod | 2.85e-11 | 52 |
future spinal cord | 2.85e-11 | 52 |
neural keel | 2.85e-11 | 52 |
neurectoderm | 1.61e-10 | 64 |
neural plate | 1.61e-10 | 64 |
presumptive neural plate | 1.61e-10 | 64 |
ecto-epithelium | 1.61e-10 | 73 |
regional part of nervous system | 2.45e-10 | 54 |
brain grey matter | 1.86e-09 | 29 |
regional part of telencephalon | 1.86e-09 | 29 |
telencephalon | 1.86e-09 | 29 |
pre-chordal neural plate | 3.29e-09 | 49 |
brain | 4.81e-09 | 47 |
future brain | 4.81e-09 | 47 |
regional part of brain | 5.30e-09 | 46 |
tube | 8.74e-09 | 114 |
regional part of forebrain | 1.23e-08 | 39 |
forebrain | 1.23e-08 | 39 |
future forebrain | 1.23e-08 | 39 |
anterior neural tube | 1.73e-08 | 40 |
ectoderm-derived structure | 2.28e-08 | 95 |
ectoderm | 2.28e-08 | 95 |
presumptive ectoderm | 2.28e-08 | 95 |
cerebral cortex | 6.81e-08 | 21 |
cerebral hemisphere | 6.81e-08 | 21 |
pallium | 6.81e-08 | 21 |
anatomical conduit | 7.31e-08 | 122 |
central nervous system | 1.30e-07 | 73 |
structure with developmental contribution from neural crest | 3.29e-07 | 92 |
nervous system | 3.70e-07 | 75 |