FFCP PHASE1:Mm9::chr2:80421045..80421056,-: Difference between revisions
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{{FFCP|EntrezGene=50884|HGNC=|MCL_coexpression_id=186|UniProt=|association_with_transcript=65bp_to_uc012byb.1_5end|description=CAGE_peak_6_at_Nckap1_5end|id=chr2:80421045..80421056,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!5.89e-09!114;UBERON:0004111!2.32e-08!122;UBERON:0002021!8.74e-08!10;UBERON:0000411!8.74e-08!10;UBERON:0001950!8.74e-08!10;UBERON:0002020!1.56e-07!34;UBERON:0001049!3.54e-07!52;UBERON:0005068!3.54e-07!52;UBERON:0006241!3.54e-07!52;UBERON:0007135!3.54e-07!52;UBERON:0000955!3.75e-07!50;UBERON:0006238!3.75e-07!50;UBERON:0002616!4.03e-07!49;UBERON:0002346!4.71e-07!71;UBERON:0003075!4.71e-07!71;UBERON:0007284!4.71e-07!71;UBERON:0002791!9.36e-07!29;UBERON:0003528!9.36e-07!29;UBERON:0001893!9.36e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.00e-09,10;UBERON:0000411,1.00e-09,10;UBERON:0001950,1.00e-09,10;UBERON:0000073,3.66e-08,54;UBERON:0002020,9.00e-08,34;UBERON:0003528,2.34e-07,29;UBERON:0002791,2.34e-07,29;UBERON:0001893,2.34e-07,29;UBERON:0001049,3.03e-07,52;UBERON:0005068,3.03e-07,52;UBERON:0006241,3.03e-07,52;UBERON:0007135,3.03e-07,52;UBERON:0010314,3.73e-07,92;UBERON:0003080,4.34e-07,40;UBERON:0002780,5.45e-07,39;UBERON:0001890,5.45e-07,39;UBERON:0006240,5.45e-07,39;UBERON:0000025,5.49e-07,114;UBERON:0002619,6.14e-07,17|phase1_expression=0.160148847104794,0.697950815278722,1.81999695755814,2.11724947914781,0.500895729946347,0.33575854382378,0.700837921786577,0,0.281577444303333,0.70219357896598,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.850432901510698,0,0,2.07990149631429,1.14704640533585,0,0.86152399231815,0.430942465371778,2.66032787238923,1.00812051903972,1.33038306393183,0.635030673459631,0.61506478758457,0,0,0.166234645358492,0.612508068787107,0,0,0,0,0,0,1.25896817975577,0.608261587317087,0.917733760808408,0,0.872100625521786,0.219686182734472,0.777719596297134,0.419959264876088,0,0,0,0,5.65970759279083,3.43840127926508,6.70373719960675,0.202316460859598,1.05798195854407,1.26766280701236,0.677689064138264,1.77858959222228,0,0,0,0,0.384218305321555,0.933206510776299,1.89008313664367,0.841299845405528,0.856952953211411,0.662605622854841,0.367472397644862,1.0543001812006,0,1.10115880999389,3.95830748064082,6.91229399653096,0.527545150920775,2.10421580285542,0.52091337055676,2.51264699101243,3.93933827022176,4.43114918552749,3.53554302568401,6.69146899755784,1.1183966749518,0.454357159999104,0.604572480854284,1.15945795480671,0.860423876981386,0,2.15881276655127,5.19821133958135,2.24013443548668,0.702222100658759,2.04516387093669,2.59786004602869,1.7666978725517,0.845060518660083,2.56652954828636,0,0,2.38140145112336,4.56047757855178,2.02209778005913,1.25602267690966,0,0.445326417194474,0.693941307064543,0.913396434936424,0.922461989024234,2.56228488939458,1.17588707135705,0.628332956648377,0,0.578397427679647,0,0.485300549842228,0.220841518460394,0.484875253135222,0,0.585561594023094,1.46612694769419,1.02182822083437,0.11981512450592,0,0,1.04853447583376,1.37250180845588,0.879580464790051,1.21677024134594,2.55715457330331,2.90903262383384,2.92034273521964,0.407357455401265,0.248813941220186,1.0108910337347,1.26265113531884,0.910843100738926,0.919608417733892,0.720248519221397,1.35634336052144,0.340182495756639,1.15302348256365,0.562210347358373,0.258703370739016,0.646703978798527,0.567318240503458,0.351902248327898,1.09597866213787,1.11218899690239,1.0447564995665,0.61734640922383,1.19420560091096,0,0,0,1.03562886267751,1.17263029990548,1.98068267607116,1.42046841351126,0.590292695242212,2.31400669331067,1.86027155800326,0.536546802799238,1.98501082024188,0.658239399653922,1.14917224855367,0.648550476366846,0.877199924551994,1.09775057645525,0.268412837520744,3.15434922846191,1.9551876352064,0.991256348951394,0.793351699990633,0.639864751605702,1.85789337488351,0.77320476793256,0,1.55664630691409,0.190225626112559,0.949058123089023,1.64698954724011,1.50801125280162,0.397912944082302,0.779856348476481,1.79763881730844,2.80979464837102,0.995706366271836,0.189667900953082,0.571242563048644,0,1.62921062276251,1.35766741017338,0.701358198903186,0.379419222745544,2.65698266363284,0.784993639206874,0.616985819609003,0.889357881261447,0.500535317148282,0.393117990226406,0.899448449539415,0.405720242777006,0.241177159752417,0.25462585178142,0,1.13494658742525,1.09824565275233,28.7536413054709,0,0.936113019343682,1.01031551178845,0.896987067609561,0.964887042726734,1.10851914099963,0.757965647081939,2.11854469374634,1.35796068620151,0.469380496577004,0.670025029767263,0.714130922658041,1.36593553500459,0.788175720530955,1.55025282754142,0.956728611944923,0.983179888294428,1.89953480052485,1.15719246865209,0,0,0.983528546038072,1.10374698521893,2.40825884981688,0.703270119553219,1.14754461763673,0.757412781613119,0.631016438832513,1.95219372148319,1.50796378412959,0.716906393857656,2.00518806674155,0.566153061577665,0.809621403349789,1.16902343164525,0.395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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=50884 | |||
|HGNC= | |||
|MCL_coexpression_id=186 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=65bp_to_uc012byb.1_5end | |||
|cluster_id=chr2:80421045..80421056,- | |||
|description=CAGE_peak_6_at_Nckap1_5end | |||
|id=chr2:80421045..80421056,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!5.89e-09!114;UBERON:0004111!2.32e-08!122;UBERON:0002021!8.74e-08!10;UBERON:0000411!8.74e-08!10;UBERON:0001950!8.74e-08!10;UBERON:0002020!1.56e-07!34;UBERON:0001049!3.54e-07!52;UBERON:0005068!3.54e-07!52;UBERON:0006241!3.54e-07!52;UBERON:0007135!3.54e-07!52;UBERON:0000955!3.75e-07!50;UBERON:0006238!3.75e-07!50;UBERON:0002616!4.03e-07!49;UBERON:0002346!4.71e-07!71;UBERON:0003075!4.71e-07!71;UBERON:0007284!4.71e-07!71;UBERON:0002791!9.36e-07!29;UBERON:0003528!9.36e-07!29;UBERON:0001893!9.36e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.00e-09,10;UBERON:0000411,1.00e-09,10;UBERON:0001950,1.00e-09,10;UBERON:0000073,3.66e-08,54;UBERON:0002020,9.00e-08,34;UBERON:0003528,2.34e-07,29;UBERON:0002791,2.34e-07,29;UBERON:0001893,2.34e-07,29;UBERON:0001049,3.03e-07,52;UBERON:0005068,3.03e-07,52;UBERON:0006241,3.03e-07,52;UBERON:0007135,3.03e-07,52;UBERON:0010314,3.73e-07,92;UBERON:0003080,4.34e-07,40;UBERON:0002780,5.45e-07,39;UBERON:0001890,5.45e-07,39;UBERON:0006240,5.45e-07,39;UBERON:0000025,5.49e-07,114;UBERON:0002619,6.14e-07,17 | |||
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| |||
|short_description=p6@Nckap1 | |||
}} |
Latest revision as of 01:16, 27 September 2015
Short description: | p6@Nckap1 |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Nckap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:186 |
Association with transcript: | 65bp_to_uc012byb.1_5end |
EntrezGene: | Nckap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.00e-09 | 10 |
visual cortex | 1.00e-09 | 10 |
neocortex | 1.00e-09 | 10 |
regional part of nervous system | 3.66e-08 | 54 |
gray matter | 9.00e-08 | 34 |
brain grey matter | 2.34e-07 | 29 |
regional part of telencephalon | 2.34e-07 | 29 |
telencephalon | 2.34e-07 | 29 |
neural tube | 3.03e-07 | 52 |
neural rod | 3.03e-07 | 52 |
future spinal cord | 3.03e-07 | 52 |
neural keel | 3.03e-07 | 52 |
structure with developmental contribution from neural crest | 3.73e-07 | 92 |
anterior neural tube | 4.34e-07 | 40 |
regional part of forebrain | 5.45e-07 | 39 |
forebrain | 5.45e-07 | 39 |
future forebrain | 5.45e-07 | 39 |
tube | 5.49e-07 | 114 |
regional part of cerebral cortex | 6.14e-07 | 17 |