FFCP PHASE1:Mm9::chr15:79722866..79722912,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=80287|HGNC=|MCL_coexpression_id=18|UniProt=Q99J72,E9QMH1,Q3U5C5|association_with_transcript=28bp_to_ENSMUST00000100424,ENSMUST00000109620,ENSMUST00000165537,NM_001160415,NM_030255,uc007wur.2,uc007wus.2,uc007wut.2,uc011zwd.1_5end|description=CAGE_peak_1_at_Apobec3_5end|id=chr15:79722866..79722912,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!1.87e-15!193;UBERON:0004120!1.87e-15!193;UBERON:0006603!1.87e-15!193;UBERON:0002390!1.00e-13!45;UBERON:0003061!1.00e-13!45;UBERON:0003104!2.08e-13!131;UBERON:0009142!2.08e-13!131;UBERON:0002193!2.11e-13!48;UBERON:0002405!5.31e-11!70;UBERON:0003081!7.42e-11!88;UBERON:0000077!5.28e-09!97;UBERON:0001041!6.53e-09!92;UBERON:0002204!2.14e-08!32;UBERON:0001004!5.35e-08!42;UBERON:0004177!1.04e-07!29;UBERON:0000065!1.08e-07!41;UBERON:0001474!2.66e-07!22;UBERON:0004765!2.66e-07!22;UBERON:0001434!2.66e-07!22;UBERON:0002371!3.40e-07!16|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.97e-14,45;UBERON:0003061,9.97e-14,45;UBERON:0002193,2.11e-13,48;UBERON:0002405,2.11e-13,48;UBERON:0003081,2.43e-10,87;UBERON:0000926,4.72e-09,120;UBERON:0004120,4.72e-09,120;UBERON:0006603,4.72e-09,120;UBERON:0002204,2.14e-08,32;UBERON:0001041,2.30e-08,80;UBERON:0002100,3.74e-08,90;UBERON:0001004,5.34e-08,42;UBERON:0000077,9.72e-08,35;UBERON:0004177,1.04e-07,29;UBERON:0005057,1.04e-07,29;UBERON:0000065,1.08e-07,41;UBERON:0001474,2.66e-07,22;UBERON:0004765,2.66e-07,22;UBERON:0001434,2.66e-07,22;UBERON:0002371,3.40e-07,16|phase1_expression=7.52699581392532,0.697950815278722,1.36499771816861,0.60492842261366,1.00179145989269,2.85394762250213,3.73780224952841,7.10178278928669,8.72890077340334,1.87251621057595,14.2110913627169,4.06838010876216,52.5586240888802,4.19617931611188,91.2720747374916,141.732687172878,138.513251869373,395.747286441909,384.331757396886,304.287380339188,8.92954546586233,100.184569761693,114.405507642854,6.71968175732308,7.11168771308227,2.29692785646008,4.30761996159075,3.66301095566011,2.66032787238923,2.77233142735924,5.09980174507201,2.54012269383853,2.46025915033828,0,46.5051107799552,38.8989070138872,39.4046857586372,27.204555997899,55.4748094611898,39.7878045420087,11.1763982725893,14.3439551841274,12.62326917881,19.6399036041901,23.4180711117079,35.0574296628812,16.4302182313088,16.133861572153,10.3252505885202,9.91592485278845,12.1788186814065,17.2503077237966,184.56086666351,23.211588544363,71.5879792173448,11.0621557495457,8.30946975822394,9.28209766099396,0.606949382578793,1.5869729378161,0,7.79342423759004,22.2323699027785,17.997994345628,21.7550599764734,17.0515227587064,14.6804054154018,18.8266969607562,4.45865332926454,3.10513658162888,2.94454945891935,1.71390590642282,2.42955395046775,2.69479758272899,3.64212789869298,5.51531271966013,3.30347642998166,1.40456071893706,1.84327839907492,1.05509030184155,1.46380229763855,1.04182674111352,0.837548997004143,0.56276261003168,1.68078072554491,3.53554302568401,3.41692033917847,1.4911955666024,4.39211921332468,5.97015324843606,56.8134397855288,8.60423876981386,1.3599426674155,0,0.649776417447669,0.448026887097336,4.49422144421606,13.8048561288227,12.7295142255406,9.54016851177919,2.95771181531029,8.98285341900225,12.7402619853323,7.11066703153331,37.8859321769625,37.7506199557897,34.88118670602,5.709193985953,759.464812737155,20.6334573300106,9.36820764537134,9.13396434936424,7.84092690670599,8.59119051149949,14.6985883919631,8.16832843642891,3.70792451601561,37.0174353714974,85.8072235391378,21.6767578929528,69.7859198334844,61.094281895038,16.775258509631,1.75668478206928,1.8850203613211,31.6766748458653,138.266653679832,92.9849233039782,141.556232959394,1.9472783122627,5.03250663100489,1.25654352112864,4.51943232499919,2.81287003063364,3.1168206683934,1.94689515681309,14.8685471221462,79.9936821022898,59.8952937487809,6.73413938836717,2.34216797332867,1.14951052216736,1.26043490863744,4.82255417074288,5.44291993210623,6.02134485338794,3.74806898238915,8.2785078636485,3.88022387279116,4.72765200419548,4.57472922826267,6.79506770525482,5.83899223373756,9.4028084960985,6.99659263787008,6.56813080501028,101.118698973106,108.08612098818,111.392091763072,3.31401236056803,5.39409937956521,5.04173772090842,5.91861838963026,8.46086196513836,5.86215028972037,7.20855228726264,6.17028823219124,7.82327793860036,3.62031669809657,13.9542344467231,14.7545233373457,14.6199987425332,24.3700627973066,18.788898626452,3.36463917702604,3.39585220851639,12.8863325363681,11.6358249331959,2.98603550749328,6.50262681209228,7.08771037271513,7.86565746031036,8.00560957841533,9.89173255785308,12.8122846617018,3.62337700392824,10.304743560811,13.5290400987983,10.9179888786707,17.9763881730844,10.3746263939853,17.922714592893,10.8110703543257,10.2823661348756,22.5415471346161,17.1067115390064,18.0375813065892,20.9004743273149,15.6826612068158,11.6612016903886,11.9319033159445,9.25478729413504,5.33614728756868,25.6941462802785,23.193961423358,32.6050062958038,22.9231937169008,31.835385087319,23.9348300674535,36.537409456253,48.6405680325106,26.3578956660558,10.0637744569148,22.3284568601102,12.793544597697,6.31447194867779,4.66433275156972,4.82443521363367,68.9129399321435,2.84237117655727,9.28900365719548,7.29903868833309,17.1323881250607,28.3085575076669,38.5630698235342,19.1230974900643,24.1181770482472,30.7835918611797,21.5263937687608,49.8144476735844,55.7772491426843,55.2559403781374,12.0633027151418,27.1952841909355,79.6658122290839,93.2666202509996,4.33486592967038,3.7507739709505,12.9508606847574,19.4402613947367,6.31016438832513,12.8844785617891,7.32439552291516,10.5146271099123,10.2487390077901,6.79383673893198,10.9298889452221,9.05993159525067,7.90575555893047,3.85585579706168,17.1747503102005,16.025904330053,14.985600260529,38.6030087755733,14.6019652173959,5.09839335925461,4.53485335447127,16.2200368590072,13.5838870725155,19.9832846163553,24.0338312646446,27.2650297108129,24.241821730161,24.018793603122,12.6502330289999,5.15677716240934,17.0219802876894,2.88097750450096,4.2688365648309,6.43011105094777,5.67488747655275,7.31312152168489,10.6956863391379,15.8321773539592,11.4989136951218,4.2366414172764,9.2621927183084,11.0473789470792,10.9795810153216,5.79004079310296,4.29740438411291,3.77524069413641,19.5292160542,5.37733375830478,167.453463181896,22.4961686079913,60.7438049772654,110.572284261754,193.422332225251,145.045361812935,88.3887835968048,90.4086382010831,79.6031849113481,12.4107180341965,2.37251995185852,10.5726122905961,8.2084059024569,13.381650944926,16.3771922809633,8.63131816862852,14.6296616633845,8.63794608547298,16.5907165813495,36.0376801590417,2.25477175473676,5.23307911153926,3.14371131868485,4.4723773319131,6.07051170345336,6.58928889414035,7.86293498926552,6.64042362704146,5.7672639434141,7.24752362478018,9.50499020650956,81.8468802426982,127.716885632803,155.504389147548,107.054758133703,86.8279473987285,87.4197961037566,72.1172697119813,75.7647274405581,73.7055084621478,66.0713013698849,66.0411512646305,71.5340844629783,69.2725259810372,76.7881247332908,10.2028672626845,0.887943813496259,0.0897138566094757,0,23.5691304719272,47.483666289149,61.1726425052665,40.3012552668644,30.5958983461572,2.82375921308533,1.84130094602871,1.71868654031819,4.46818274093588,4.11049511862385,0,2.70009000092722,0.900642406448441,0.453142408984205,0.51776031175182,1.66059756134683,5.58634822761443,7.34154504742777,12.1553358534147,7.96530017986333,7.16989682955055,14.0015438515018,9.68364769022803,10.2694147069381,8.84440241173291,10.8996098952803,12.6379648728671,12.4543204934944,14.2776089862858,14.3588672389033,13.8125170472091,10.7772423128716,10.6100071255038,10.3021475200827,9.71512872887022,10.6289468239479,8.69631450180754,8.34526664815623,12.7904846636449,11.1990162694243,11.5922012811597,9.3293266165114,9.73357932320019,11.1359373353607,12.3451299764702,8.66035632306471,8.56988996667402,13.5046244245997,9.29621047115796,11.5743966588685,5.49583271463481,11.9305120307158,18.9086527562503,13.390183244819,18.9708620442783,26.8966689319689|short_description=p1@Apobec3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80287 | |||
|HGNC= | |||
|MCL_coexpression_id=18 | |||
|TSSclassifier=NA | |||
|UniProt=Q99J72,E9QMH1,Q3U5C5 | |||
|association_with_transcript=28bp_to_ENSMUST00000100424,ENSMUST00000109620,ENSMUST00000165537,NM_001160415,NM_030255,uc007wur.2,uc007wus.2,uc007wut.2,uc011zwd.1_5end | |||
|cluster_id=chr15:79722866..79722912,+ | |||
|description=CAGE_peak_1_at_Apobec3_5end | |||
|id=chr15:79722866..79722912,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.87e-15!193;UBERON:0004120!1.87e-15!193;UBERON:0006603!1.87e-15!193;UBERON:0002390!1.00e-13!45;UBERON:0003061!1.00e-13!45;UBERON:0003104!2.08e-13!131;UBERON:0009142!2.08e-13!131;UBERON:0002193!2.11e-13!48;UBERON:0002405!5.31e-11!70;UBERON:0003081!7.42e-11!88;UBERON:0000077!5.28e-09!97;UBERON:0001041!6.53e-09!92;UBERON:0002204!2.14e-08!32;UBERON:0001004!5.35e-08!42;UBERON:0004177!1.04e-07!29;UBERON:0000065!1.08e-07!41;UBERON:0001474!2.66e-07!22;UBERON:0004765!2.66e-07!22;UBERON:0001434!2.66e-07!22;UBERON:0002371!3.40e-07!16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.97e-14,45;UBERON:0003061,9.97e-14,45;UBERON:0002193,2.11e-13,48;UBERON:0002405,2.11e-13,48;UBERON:0003081,2.43e-10,87;UBERON:0000926,4.72e-09,120;UBERON:0004120,4.72e-09,120;UBERON:0006603,4.72e-09,120;UBERON:0002204,2.14e-08,32;UBERON:0001041,2.30e-08,80;UBERON:0002100,3.74e-08,90;UBERON:0001004,5.34e-08,42;UBERON:0000077,9.72e-08,35;UBERON:0004177,1.04e-07,29;UBERON:0005057,1.04e-07,29;UBERON:0000065,1.08e-07,41;UBERON:0001474,2.66e-07,22;UBERON:0004765,2.66e-07,22;UBERON:0001434,2.66e-07,22;UBERON:0002371,3.40e-07,16 | |||
|phase1_expression=7.52699581392532,0.697950815278722,1.36499771816861,0.60492842261366,1.00179145989269,2.85394762250213,3.73780224952841,7.10178278928669,8.72890077340334,1.87251621057595,14.2110913627169,4.06838010876216,52.5586240888802,4.19617931611188,91.2720747374916,141.732687172878,138.513251869373,395.747286441909,384.331757396886,304.287380339188,8.92954546586233,100.184569761693,114.405507642854,6.71968175732308,7.11168771308227,2.29692785646008,4.30761996159075,3.66301095566011,2.66032787238923,2.77233142735924,5.09980174507201,2.54012269383853,2.46025915033828,0,46.5051107799552,38.8989070138872,39.4046857586372,27.204555997899,55.4748094611898,39.7878045420087,11.1763982725893,14.3439551841274,12.62326917881,19.6399036041901,23.4180711117079,35.0574296628812,16.4302182313088,16.133861572153,10.3252505885202,9.91592485278845,12.1788186814065,17.2503077237966,184.56086666351,23.211588544363,71.5879792173448,11.0621557495457,8.30946975822394,9.28209766099396,0.606949382578793,1.5869729378161,0,7.79342423759004,22.2323699027785,17.997994345628,21.7550599764734,17.0515227587064,14.6804054154018,18.8266969607562,4.45865332926454,3.10513658162888,2.94454945891935,1.71390590642282,2.42955395046775,2.69479758272899,3.64212789869298,5.51531271966013,3.30347642998166,1.40456071893706,1.84327839907492,1.05509030184155,1.46380229763855,1.04182674111352,0.837548997004143,0.56276261003168,1.68078072554491,3.53554302568401,3.41692033917847,1.4911955666024,4.39211921332468,5.97015324843606,56.8134397855288,8.60423876981386,1.3599426674155,0,0.649776417447669,0.448026887097336,4.49422144421606,13.8048561288227,12.7295142255406,9.54016851177919,2.95771181531029,8.98285341900225,12.7402619853323,7.11066703153331,37.8859321769625,37.7506199557897,34.88118670602,5.709193985953,759.464812737155,20.6334573300106,9.36820764537134,9.13396434936424,7.84092690670599,8.59119051149949,14.6985883919631,8.16832843642891,3.70792451601561,37.0174353714974,85.8072235391378,21.6767578929528,69.7859198334844,61.094281895038,16.775258509631,1.75668478206928,1.8850203613211,31.6766748458653,138.266653679832,92.9849233039782,141.556232959394,1.9472783122627,5.03250663100489,1.25654352112864,4.51943232499919,2.81287003063364,3.1168206683934,1.94689515681309,14.8685471221462,79.9936821022898,59.8952937487809,6.73413938836717,2.34216797332867,1.14951052216736,1.26043490863744,4.82255417074288,5.44291993210623,6.02134485338794,3.74806898238915,8.2785078636485,3.88022387279116,4.72765200419548,4.57472922826267,6.79506770525482,5.83899223373756,9.4028084960985,6.99659263787008,6.56813080501028,101.118698973106,108.08612098818,111.392091763072,3.31401236056803,5.39409937956521,5.04173772090842,5.91861838963026,8.46086196513836,5.86215028972037,7.20855228726264,6.17028823219124,7.82327793860036,3.62031669809657,13.9542344467231,14.7545233373457,14.6199987425332,24.3700627973066,18.788898626452,3.36463917702604,3.39585220851639,12.8863325363681,11.6358249331959,2.98603550749328,6.50262681209228,7.08771037271513,7.86565746031036,8.00560957841533,9.89173255785308,12.8122846617018,3.62337700392824,10.304743560811,13.5290400987983,10.9179888786707,17.9763881730844,10.3746263939853,17.922714592893,10.8110703543257,10.2823661348756,22.5415471346161,17.1067115390064,18.0375813065892,20.9004743273149,15.6826612068158,11.6612016903886,11.9319033159445,9.25478729413504,5.33614728756868,25.6941462802785,23.193961423358,32.6050062958038,22.9231937169008,31.835385087319,23.9348300674535,36.537409456253,48.6405680325106,26.3578956660558,10.0637744569148,22.3284568601102,12.793544597697,6.31447194867779,4.66433275156972,4.82443521363367,68.9129399321435,2.84237117655727,9.28900365719548,7.29903868833309,17.1323881250607,28.3085575076669,38.5630698235342,19.1230974900643,24.1181770482472,30.7835918611797,21.5263937687608,49.8144476735844,55.7772491426843,55.2559403781374,12.0633027151418,27.1952841909355,79.6658122290839,93.2666202509996,4.33486592967038,3.7507739709505,12.9508606847574,19.4402613947367,6.31016438832513,12.8844785617891,7.32439552291516,10.5146271099123,10.2487390077901,6.79383673893198,10.9298889452221,9.05993159525067,7.90575555893047,3.85585579706168,17.1747503102005,16.025904330053,14.985600260529,38.6030087755733,14.6019652173959,5.09839335925461,4.53485335447127,16.2200368590072,13.5838870725155,19.9832846163553,24.0338312646446,27.2650297108129,24.241821730161,24.018793603122,12.6502330289999,5.15677716240934,17.0219802876894,2.88097750450096,4.2688365648309,6.43011105094777,5.67488747655275,7.31312152168489,10.6956863391379,15.8321773539592,11.4989136951218,4.2366414172764,9.2621927183084,11.0473789470792,10.9795810153216,5.79004079310296,4.29740438411291,3.77524069413641,19.5292160542,5.37733375830478,167.453463181896,22.4961686079913,60.7438049772654,110.572284261754,193.422332225251,145.045361812935,88.3887835968048,90.4086382010831,79.6031849113481,12.4107180341965,2.37251995185852,10.5726122905961,8.2084059024569,13.381650944926,16.3771922809633,8.63131816862852,14.6296616633845,8.63794608547298,16.5907165813495,36.0376801590417,2.25477175473676,5.23307911153926,3.14371131868485,4.4723773319131,6.07051170345336,6.58928889414035,7.86293498926552,6.64042362704146,5.7672639434141,7.24752362478018,9.50499020650956,81.8468802426982,127.716885632803,155.504389147548,107.054758133703,86.8279473987285,87.4197961037566,72.1172697119813,75.7647274405581,73.7055084621478,66.0713013698849,66.0411512646305,71.5340844629783,69.2725259810372,76.7881247332908,10.2028672626845,0.887943813496259,0.0897138566094757,0,23.5691304719272,47.483666289149,61.1726425052665,40.3012552668644,30.5958983461572,2.82375921308533,1.84130094602871,1.71868654031819,4.46818274093588,4.11049511862385,0,2.70009000092722,0.900642406448441,0.453142408984205,0.51776031175182,1.66059756134683,5.58634822761443,7.34154504742777,12.1553358534147,7.96530017986333,7.16989682955055,14.0015438515018,9.68364769022803,10.2694147069381,8.84440241173291,10.8996098952803,12.6379648728671,12.4543204934944,14.2776089862858,14.3588672389033,13.8125170472091,10.7772423128716,10.6100071255038,10.3021475200827,9.71512872887022,10.6289468239479,8.69631450180754,8.34526664815623,12.7904846636449,11.1990162694243,11.5922012811597,9.3293266165114,9.73357932320019,11.1359373353607,12.3451299764702,8.66035632306471,8.56988996667402,13.5046244245997,9.29621047115796,11.5743966588685,5.49583271463481,11.9305120307158,18.9086527562503,13.390183244819,18.9708620442783,26.8966689319689 | |||
|short_description=p1@Apobec3 | |||
}} |
Latest revision as of 03:18, 27 September 2015
Short description: | p1@Apobec3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Apobec3_5end |
Coexpression cluster: | MCL_coexpression_mm9:18 |
Association with transcript: | 28bp_to_ENSMUST00000100424, ENSMUST00000109620, ENSMUST00000165537, NM_001160415, NM_030255, uc007wur.2, uc007wus.2, uc007wut.2, uc011zwd.1_5end |
EntrezGene: | Apobec3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.97e-14 | 45 |
blood island | 9.97e-14 | 45 |
hemolymphoid system | 2.11e-13 | 48 |
immune system | 2.11e-13 | 48 |
lateral plate mesoderm | 2.43e-10 | 87 |
mesoderm | 4.72e-09 | 120 |
mesoderm-derived structure | 4.72e-09 | 120 |
presumptive mesoderm | 4.72e-09 | 120 |
musculoskeletal system | 2.14e-08 | 32 |
foregut | 2.30e-08 | 80 |
trunk | 3.74e-08 | 90 |
respiratory system | 5.34e-08 | 42 |
mixed endoderm/mesoderm-derived structure | 9.72e-08 | 35 |
hemopoietic organ | 1.04e-07 | 29 |
immune organ | 1.04e-07 | 29 |
respiratory tract | 1.08e-07 | 41 |
bone element | 2.66e-07 | 22 |
skeletal element | 2.66e-07 | 22 |
skeletal system | 2.66e-07 | 22 |
bone marrow | 3.40e-07 | 16 |