FFCP PHASE1:Mm9::chr9:90150770..90150781,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67016 | |EntrezGene=67016 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=427 | |||
|TSSclassifier=NA | |||
|UniProt=F6Q4U3 | |UniProt=F6Q4U3 | ||
|association_with_transcript=-5bp_to_ENSMUST00000144646_5end | |association_with_transcript=-5bp_to_ENSMUST00000144646_5end | ||
|cluster_id=chr9:90150770..90150781,- | |||
|description=CAGE_peak_3_at_Tbc1d2b_5end | |description=CAGE_peak_3_at_Tbc1d2b_5end | ||
|id=chr9:90150770..90150781,- | |id=chr9:90150770..90150781,- | ||
|ontology_enrichment_celltype=CL:0002453!7.50e-09!8;CL:0000333!1.02e-08!10;CL:0000095!1.02e-08!10;CL:0000243!1.02e-08!10;CL:0000123!1.02e-08!10;CL:0000125!1.02e-08!10;CL:0000030!1.02e-08!10;CL:0000339!1.02e-08!10;CL:0000219!2.63e-08!54;CL:0000128!4.22e-07!6;CL:0000126!4.22e-07!6;CL:0000127!4.22e-07!6 | |ontology_enrichment_celltype=CL:0002453!7.50e-09!8;CL:0000333!1.02e-08!10;CL:0000095!1.02e-08!10;CL:0000243!1.02e-08!10;CL:0000123!1.02e-08!10;CL:0000125!1.02e-08!10;CL:0000030!1.02e-08!10;CL:0000339!1.02e-08!10;CL:0000219!2.63e-08!54;CL:0000128!4.22e-07!6;CL:0000126!4.22e-07!6;CL:0000127!4.22e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002453,3.64e-22,8;CL:0000333,1.99e-17,10;CL:0000095,1.99e-17,10;CL:0000243,1.99e-17,10;CL:0000123,1.99e-17,10;CL:0000125,1.99e-17,10;CL:0000030,1.99e-17,10;CL:0000339,1.99e-17,10;CL:0000128,3.15e-17,6;CL:0000126,3.15e-17,6;CL:0000127,3.15e-17,6;CL:0000219,2.99e-10,54;CL:0002614,8.75e-08,3;CL:0002603,6.66e-07,2;CL:0002605,7.56e-07,2;CL:0002604,7.56e-07,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!9.09e-08!12;UBERON:0003057!9.09e-08!12 | |ontology_enrichment_uberon=UBERON:0003076!9.09e-08!12;UBERON:0003057!9.09e-08!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004733,5.23e-15,6;UBERON:0004732,5.23e-15,6;UBERON:0002028,5.23e-15,6;UBERON:0007277,5.23e-15,6;UBERON:0002037,1.19e-10,4;UBERON:0002680,1.19e-10,4;UBERON:0001895,1.19e-10,4;UBERON:0010092,1.19e-10,4;UBERON:0006215,1.19e-10,4;UBERON:0002950,9.00e-10,4;UBERON:0001891,9.00e-10,4;UBERON:0009616,9.00e-10,4;UBERON:0010286,9.00e-10,4;UBERON:0003076,1.06e-09,12;UBERON:0003057,1.06e-09,12;UBERON:0002038,8.75e-08,3;UBERON:0009663,8.75e-08,3;UBERON:0009661,8.75e-08,3;UBERON:0000125,8.75e-08,3;UBERON:0002308,8.75e-08,3;UBERON:0001017,1.29e-07,73;UBERON:0001016,2.63e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0,0.137114433605739,0,0.425216450755349,0.0992909512008853,1.04479915655574,0,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0,0,22.6893489860931,23.3286917327078,18.0142669842267,22.7482981916912,16.6583841734181,17.2503077237966,0,0,0,1.28629718017973,0.286533439938757,0.515672092277442,0,0,0,1.35537812827653,4.4464739805557,0.449949858640699,0.988866362566974,0.7104801149461,4.19440154725767,5.76327457982332,0,0,0,0.571301968807607,0.662605622854841,0,0,0,2.20231761998777,0.638436690425939,0.768032666281217,0,0.0914876436024097,0,1.95428099300967,1.12552522006336,1.83357897332172,0.589257170947335,0.284743361598206,0,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0,2.21559419351475,1.29893002301434,1.41335829804136,0,2.56652954828636,5.09610479413291,0,0,0,0,0.22836775943812,2.58937883647172,0,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0,5.19109432242185,1.44599356919912,0,0,0.662524555381181,0.484875253135222,0,1.17112318804619,1.25668024088073,0,0.958520996047362,0.599902730993408,1.14363204365758,1.3481157546434,0,0.376963056338593,0,0,0.41557608911912,0.811206315338788,0,0.248813941220186,0,0,0,0,0,0.150704817835715,0.476255494059295,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0.702213187313235,1.54408744268829,1.70498099637356,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.420579897128254,0.102904612379284,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0.189667900953082,0,0,0,0,0.0701358198903186,0,0,0,0,0,0.83422552858047,0.196558995113203,0,0.405720242777006,0,0.50925170356284,0.287696137450811,0.324270453550071,0,0,0,0,0,0,0.482443521363367,0.184753190166605,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,2.56880943980467,1.52375192569864,0.163934945376675,0,0,0,0,0.238968797952552,0,0,0.809621403349789,0,0,0.642642632843614,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58138878870081,0.42366414172764,0,0,0.322928853391811,0.0603129249281559,0,0.328281799490123,0,2.59595422814714,1.02522528478712,0,0,0.565105371014073,0.683471138605126,0.457556346413045,0,0.139951452323658,0.138199973804424,0,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0,0,0,0,0.39736270956253,0.360586348559907,0,0.100966449948148,0.0762068066549998,0.201652370273681,0.584747284438515,0.0962118416403295,0.701261413089414,0,0,0,0,0,3.37828455812128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0.367687016900028,0,0,0,0,0,0,0.187283014939765,0,0.0574354689556133,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0.145346416632329,0,0.169229215783353,0,0,0,0,0,0.197008964751127,0,0,0,0,0,0,0,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0,0.137114433605739,0,0.425216450755349,0.0992909512008853,1.04479915655574,0,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0,0,22.6893489860931,23.3286917327078,18.0142669842267,22.7482981916912,16.6583841734181,17.2503077237966,0,0,0,1.28629718017973,0.286533439938757,0.515672092277442,0,0,0,1.35537812827653,4.4464739805557,0.449949858640699,0.988866362566974,0.7104801149461,4.19440154725767,5.76327457982332,0,0,0,0.571301968807607,0.662605622854841,0,0,0,2.20231761998777,0.638436690425939,0.768032666281217,0,0.0914876436024097,0,1.95428099300967,1.12552522006336,1.83357897332172,0.589257170947335,0.284743361598206,0,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0,2.21559419351475,1.29893002301434,1.41335829804136,0,2.56652954828636,5.09610479413291,0,0,0,0,0.22836775943812,2.58937883647172,0,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0,5.19109432242185,1.44599356919912,0,0,0.662524555381181,0.484875253135222,0,1.17112318804619,1.25668024088073,0,0.958520996047362,0.599902730993408,1.14363204365758,1.3481157546434,0,0.376963056338593,0,0,0.41557608911912,0.811206315338788,0,0.248813941220186,0,0,0,0,0,0.150704817835715,0.476255494059295,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0.702213187313235,1.54408744268829,1.70498099637356,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.420579897128254,0.102904612379284,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0.189667900953082,0,0,0,0,0.0701358198903186,0,0,0,0,0,0.83422552858047,0.196558995113203,0,0.405720242777006,0,0.50925170356284,0.287696137450811,0.324270453550071,0,0,0,0,0,0,0.482443521363367,0.184753190166605,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,2.56880943980467,1.52375192569864,0.163934945376675,0,0,0,0,0.238968797952552,0,0,0.809621403349789,0,0,0.642642632843614,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58138878870081,0.42366414172764,0,0,0.322928853391811,0.0603129249281559,0,0.328281799490123,0,2.59595422814714,1.02522528478712,0,0,0.565105371014073,0.683471138605126,0.457556346413045,0,0.139951452323658,0.138199973804424,0,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0,0,0,0,0.39736270956253,0.360586348559907,0,0.100966449948148,0.0762068066549998,0.201652370273681,0.584747284438515,0.0962118416403295,0.701261413089414,0,0,0,0,0,3.37828455812128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0.367687016900028,0,0,0,0,0,0,0.187283014939765,0,0.0574354689556133,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0.145346416632329,0,0.169229215783353,0,0,0,0,0,0.197008964751127,0,0,0,0,0,0,0,0.220591419119515,0 | ||
|short_description=p3@Tbc1d2b | |short_description=p3@Tbc1d2b | ||
}} | }} |
Latest revision as of 06:05, 27 September 2015
Short description: | p3@Tbc1d2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tbc1d2b_5end |
Coexpression cluster: | MCL_coexpression_mm9:427 |
Association with transcript: | -5bp_to_ENSMUST00000144646_5end |
EntrezGene: | Tbc1d2b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 3.64e-22 | 8 |
migratory neural crest cell | 1.99e-17 | 10 |
neuron associated cell | 1.99e-17 | 10 |
glial cell (sensu Vertebrata) | 1.99e-17 | 10 |
neuron associated cell (sensu Vertebrata) | 1.99e-17 | 10 |
glial cell | 1.99e-17 | 10 |
glioblast | 1.99e-17 | 10 |
glioblast (sensu Vertebrata) | 1.99e-17 | 10 |
oligodendrocyte | 3.15e-17 | 6 |
macroglial cell | 3.15e-17 | 6 |
astrocyte | 3.15e-17 | 6 |
motile cell | 2.99e-10 | 54 |
neuron of the substantia nigra | 8.75e-08 | 3 |
astrocyte of the cerebellum | 6.66e-07 | 2 |
astrocyte of the cerebral cortex | 7.56e-07 | 2 |
astrocyte of the hippocampus | 7.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
segmental subdivision of hindbrain | 5.23e-15 | 6 |
segmental subdivision of nervous system | 5.23e-15 | 6 |
hindbrain | 5.23e-15 | 6 |
presumptive hindbrain | 5.23e-15 | 6 |
cerebellum | 1.19e-10 | 4 |
regional part of metencephalon | 1.19e-10 | 4 |
metencephalon | 1.19e-10 | 4 |
future metencephalon | 1.19e-10 | 4 |
rhombic lip | 1.19e-10 | 4 |
regional part of midbrain | 9.00e-10 | 4 |
midbrain | 9.00e-10 | 4 |
presumptive midbrain | 9.00e-10 | 4 |
midbrain neural tube | 9.00e-10 | 4 |
posterior neural tube | 1.06e-09 | 12 |
chordal neural plate | 1.06e-09 | 12 |
substantia nigra | 8.75e-08 | 3 |
telencephalic nucleus | 8.75e-08 | 3 |
midbrain nucleus | 8.75e-08 | 3 |
neural nucleus | 8.75e-08 | 3 |
nucleus of brain | 8.75e-08 | 3 |
central nervous system | 1.29e-07 | 73 |
nervous system | 2.63e-07 | 75 |