FFCP PHASE1:Mm9::chr7:99890142..99890225,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=75985 | |EntrezGene=75985 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=361 | |||
|TSSclassifier=NA | |||
|UniProt=Q0PD24,Q923S9 | |UniProt=Q0PD24,Q923S9 | ||
|association_with_transcript=0bp_to_NM_029494,uc009iif.1_5end | |association_with_transcript=0bp_to_NM_029494,uc009iif.1_5end | ||
|cluster_id=chr7:99890142..99890225,+ | |||
|description=CAGE_peak_1_at_Rab30_5end | |description=CAGE_peak_1_at_Rab30_5end | ||
|id=chr7:99890142..99890225,+ | |id=chr7:99890142..99890225,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.34e-08!23;CL:0000337!2.34e-08!23;CL:0000393!1.72e-07!39;CL:0000211!1.72e-07!39;CL:0000540!8.77e-07!33;CL:0000047!8.77e-07!33;CL:0000031!8.77e-07!33;CL:0000404!8.77e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.30e-08,23;CL:0000337,2.30e-08,23;CL:0000393,1.69e-07,39;CL:0000211,1.69e-07,39;CL:0000540,8.65e-07,33;CL:0000047,8.65e-07,33;CL:0000031,8.65e-07,33;CL:0000404,8.65e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!9.66e-18!63;UBERON:0002346!1.10e-17!71;UBERON:0003075!1.10e-17!71;UBERON:0007284!1.10e-17!71;UBERON:0001049!4.26e-17!52;UBERON:0005068!4.26e-17!52;UBERON:0006241!4.26e-17!52;UBERON:0007135!4.26e-17!52;UBERON:0000955!2.47e-16!50;UBERON:0006238!2.47e-16!50;UBERON:0001017!6.41e-16!73;UBERON:0005743!6.41e-16!73;UBERON:0002616!8.56e-16!49;UBERON:0003056!1.18e-15!49;UBERON:0004121!7.66e-15!102;UBERON:0000924!7.66e-15!102;UBERON:0006601!7.66e-15!102;UBERON:0000073!8.41e-15!75;UBERON:0001016!8.41e-15!75;UBERON:0003080!9.64e-13!40;UBERON:0002020!2.25e-12!34;UBERON:0002780!3.93e-12!39;UBERON:0001890!3.93e-12!39;UBERON:0006240!3.93e-12!39;UBERON:0000468!1.47e-10!333;UBERON:0002791!4.26e-10!29;UBERON:0003528!4.26e-10!29;UBERON:0001893!4.26e-10!29;UBERON:0000025!5.23e-08!114;UBERON:0000922!5.25e-08!328;UBERON:0004111!1.19e-07!122;UBERON:0000479!7.51e-07!349;UBERON:0000153!7.77e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.59e-20,64;UBERON:0003075,5.59e-20,64;UBERON:0007284,5.59e-20,64;UBERON:0000073,2.89e-18,54;UBERON:0010371,1.45e-17,73;UBERON:0001049,4.10e-17,52;UBERON:0005068,4.10e-17,52;UBERON:0006241,4.10e-17,52;UBERON:0007135,4.10e-17,52;UBERON:0004121,3.42e-16,95;UBERON:0000924,3.42e-16,95;UBERON:0006601,3.42e-16,95;UBERON:0001017,6.18e-16,73;UBERON:0003056,1.14e-15,49;UBERON:0001016,8.13e-15,75;UBERON:0010314,1.05e-14,92;UBERON:0000955,1.46e-14,47;UBERON:0006238,1.46e-14,47;UBERON:0002616,4.88e-14,46;UBERON:0003080,9.38e-13,40;UBERON:0002020,2.19e-12,34;UBERON:0002780,3.82e-12,39;UBERON:0001890,3.82e-12,39;UBERON:0006240,3.82e-12,39;UBERON:0003528,4.17e-10,29;UBERON:0002791,4.17e-10,29;UBERON:0001893,4.17e-10,29;UBERON:0000922,3.38e-08,320;UBERON:0000025,5.14e-08,114;UBERON:0004111,1.18e-07,122;UBERON:0000479,7.41e-07,349 | |||
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| ||
|short_description=p1@Rab30 | |short_description=p1@Rab30 | ||
}} | }} |
Latest revision as of 06:21, 27 September 2015
Short description: | p1@Rab30 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab30_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | 0bp_to_NM_029494, uc009iif.1_5end |
EntrezGene: | Rab30 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.30e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.30e-08 | 23 |
electrically responsive cell | 1.69e-07 | 39 |
electrically active cell | 1.69e-07 | 39 |
neuron | 8.65e-07 | 33 |
neuronal stem cell | 8.65e-07 | 33 |
neuroblast | 8.65e-07 | 33 |
electrically signaling cell | 8.65e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.59e-20 | 64 |
neural plate | 5.59e-20 | 64 |
presumptive neural plate | 5.59e-20 | 64 |
regional part of nervous system | 2.89e-18 | 54 |
ecto-epithelium | 1.45e-17 | 73 |
neural tube | 4.10e-17 | 52 |
neural rod | 4.10e-17 | 52 |
future spinal cord | 4.10e-17 | 52 |
neural keel | 4.10e-17 | 52 |
ectoderm-derived structure | 3.42e-16 | 95 |
ectoderm | 3.42e-16 | 95 |
presumptive ectoderm | 3.42e-16 | 95 |
central nervous system | 6.18e-16 | 73 |
pre-chordal neural plate | 1.14e-15 | 49 |
nervous system | 8.13e-15 | 75 |
structure with developmental contribution from neural crest | 1.05e-14 | 92 |
brain | 1.46e-14 | 47 |
future brain | 1.46e-14 | 47 |
regional part of brain | 4.88e-14 | 46 |
anterior neural tube | 9.38e-13 | 40 |
gray matter | 2.19e-12 | 34 |
regional part of forebrain | 3.82e-12 | 39 |
forebrain | 3.82e-12 | 39 |
future forebrain | 3.82e-12 | 39 |
brain grey matter | 4.17e-10 | 29 |
regional part of telencephalon | 4.17e-10 | 29 |
telencephalon | 4.17e-10 | 29 |
embryo | 3.38e-08 | 320 |
tube | 5.14e-08 | 114 |
anatomical conduit | 1.18e-07 | 122 |
tissue | 7.41e-07 | 349 |