FFCP PHASE1:Mm9::chr1:74283176..74283202,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:74283176..74283202,+
|short_description=p2@Arpc2
|description=CAGE_peak_2_at_Arpc2_5end
|association_with_transcript=52bp_to_ENSMUST00000113819,NM_029711,u...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=76709 | |EntrezGene=76709 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=532 | |||
|TSSclassifier=NA | |||
|UniProt=D3YXG6,Q3UA52,Q9CVB6 | |UniProt=D3YXG6,Q3UA52,Q9CVB6 | ||
|association_with_transcript=52bp_to_ENSMUST00000113819,NM_029711,uc007blo.1_5end | |||
|cluster_id=chr1:74283176..74283202,+ | |||
|description=CAGE_peak_2_at_Arpc2_5end | |||
|id=chr1:74283176..74283202,+ | |||
|ontology_enrichment_celltype=CL:0000063!2.40e-10!66;CL:0002320!1.34e-09!46;CL:0000134!1.34e-09!46;CL:0000738!4.78e-09!17;CL:0002087!4.78e-09!17;CL:0000219!5.53e-09!54;CL:0000988!4.09e-08!32;CL:0002032!4.09e-08!32;CL:0000037!4.09e-08!32;CL:0000566!4.09e-08!32;CL:0000837!4.09e-08!32;CL:0000838!7.56e-08!12;CL:0000084!2.08e-07!11;CL:0000827!2.08e-07!11;CL:0000542!3.03e-07!13;CL:0000051!3.03e-07!13;CL:0000791!4.95e-07!9;CL:0000789!4.95e-07!9;CL:0002420!4.95e-07!9;CL:0002419!4.95e-07!9;CL:0000790!4.95e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002320,1.31e-09,46;CL:0000134,1.31e-09,46;CL:0000738,4.78e-09,17;CL:0002087,4.78e-09,17;CL:0000219,5.44e-09,54;CL:0000988,4.01e-08,32;CL:0002032,4.01e-08,32;CL:0000037,4.01e-08,32;CL:0000837,4.01e-08,32;CL:0000838,7.56e-08,12;CL:0000084,2.08e-07,11;CL:0000827,2.08e-07,11;CL:0000542,3.03e-07,13;CL:0000051,3.03e-07,13;CL:0000791,4.95e-07,9;CL:0000789,4.95e-07,9;CL:0002420,4.95e-07,9;CL:0002419,4.95e-07,9;CL:0000790,4.95e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.34e-09!46;UBERON:0002193!6.86e-09!48;UBERON:0003081!3.02e-08!88;UBERON:0002390!6.29e-08!45;UBERON:0003061!6.29e-08!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.31e-09,46;UBERON:0002193,6.86e-09,48;UBERON:0002405,6.86e-09,48;UBERON:0004119,2.96e-08,118;UBERON:0000925,2.96e-08,118;UBERON:0006595,2.96e-08,118;UBERON:0003081,6.00e-08,87;UBERON:0002390,6.29e-08,45;UBERON:0003061,6.29e-08,45;UBERON:0001007,1.20e-07,116;UBERON:0001555,1.20e-07,116;UBERON:0007026,1.20e-07,116;UBERON:0004921,3.96e-07,114 | |||
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| ||
|short_description=p2@Arpc2 | |||
}} | }} |
Latest revision as of 14:20, 1 October 2015
Short description: | p2@Arpc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arpc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:532 |
Association with transcript: | 52bp_to_ENSMUST00000113819, NM_029711, uc007blo.1_5end |
EntrezGene: | Arpc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue cell | 1.31e-09 | 46 |
mesenchymal cell | 1.31e-09 | 46 |
leukocyte | 4.78e-09 | 17 |
nongranular leukocyte | 4.78e-09 | 17 |
motile cell | 5.44e-09 | 54 |
hematopoietic cell | 4.01e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.01e-08 | 32 |
hematopoietic stem cell | 4.01e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.01e-08 | 32 |
lymphoid lineage restricted progenitor cell | 7.56e-08 | 12 |
T cell | 2.08e-07 | 11 |
pro-T cell | 2.08e-07 | 11 |
lymphocyte | 3.03e-07 | 13 |
common lymphoid progenitor | 3.03e-07 | 13 |
mature alpha-beta T cell | 4.95e-07 | 9 |
alpha-beta T cell | 4.95e-07 | 9 |
immature T cell | 4.95e-07 | 9 |
mature T cell | 4.95e-07 | 9 |
immature alpha-beta T cell | 4.95e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.31e-09 | 46 |
hemolymphoid system | 6.86e-09 | 48 |
immune system | 6.86e-09 | 48 |
endoderm-derived structure | 2.96e-08 | 118 |
endoderm | 2.96e-08 | 118 |
presumptive endoderm | 2.96e-08 | 118 |
lateral plate mesoderm | 6.00e-08 | 87 |
hematopoietic system | 6.29e-08 | 45 |
blood island | 6.29e-08 | 45 |
digestive system | 1.20e-07 | 116 |
digestive tract | 1.20e-07 | 116 |
primitive gut | 1.20e-07 | 116 |
subdivision of digestive tract | 3.96e-07 | 114 |