FFCP PHASE1:Mm9::chr3:129534207..129534259,-: Difference between revisions
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{{FFCP|EntrezGene=68147|HGNC=|MCL_coexpression_id=301|UniProt=|association_with_transcript=18bp_to_ENSMUST00000128441_5end|description=CAGE_peak_2_at_Gar1_5end|id=chr3:129534207..129534259,-|ontology_enrichment_celltype=CL:0000542!7.62e-09!13;CL:0000051!7.62e-09!13;CL:0000838!2.76e-08!12;CL:0000988!3.48e-08!32;CL:0002032!3.48e-08!32;CL:0000037!3.48e-08!32;CL:0000566!3.48e-08!32;CL:0000837!3.48e-08!32;CL:0000084!1.10e-07!11;CL:0000827!1.10e-07!11;CL:0000791!4.31e-07!9;CL:0000789!4.31e-07!9;CL:0002420!4.31e-07!9;CL:0002419!4.31e-07!9;CL:0000790!4.31e-07!9;CL:0002320!5.01e-07!46;CL:0000134!5.01e-07!46;CL:0000738!6.19e-07!17;CL:0002087!6.19e-07!17;CL:0000034!8.93e-07!97|ontology_enrichment_celltype_v019_2=CL:0000542,7.62e-09,13;CL:0000051,7.62e-09,13;CL:0000838,2.76e-08,12;CL:0000988,3.48e-08,32;CL:0002032,3.48e-08,32;CL:0000037,3.48e-08,32;CL:0000837,3.48e-08,32;CL:0000084,1.10e-07,11;CL:0000827,1.10e-07,11;CL:0000791,4.31e-07,9;CL:0000789,4.31e-07,9;CL:0002420,4.31e-07,9;CL:0002419,4.31e-07,9;CL:0000790,4.31e-07,9;CL:0002320,5.01e-07,46;CL:0000134,5.01e-07,46;CL:0000738,6.19e-07,17;CL:0002087,6.19e-07,17;CL:0000034,8.93e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000072!1.51e-08!27;UBERON:0004177!3.18e-08!29;UBERON:0002390!4.44e-08!45;UBERON:0003061!4.44e-08!45;UBERON:0002370!5.89e-08!23;UBERON:0000974!5.89e-08!23;UBERON:0004807!5.89e-08!23;UBERON:0005058!5.89e-08!23;UBERON:0003351!5.89e-08!23;UBERON:0009113!5.89e-08!23;UBERON:0003295!5.89e-08!23;UBERON:0009722!5.89e-08!23;UBERON:0005562!5.89e-08!23;UBERON:0007690!5.89e-08!23;UBERON:0000065!8.01e-08!41;UBERON:0002193!1.42e-07!48;UBERON:0001004!2.38e-07!42;UBERON:0006562!2.66e-07!24;UBERON:0001557!2.66e-07!24;UBERON:0001042!2.66e-07!24;UBERON:0008814!2.66e-07!24;UBERON:0009145!2.66e-07!24;UBERON:0003408!2.88e-07!24;UBERON:0002384!5.01e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0000072,1.50e-08,27;UBERON:0004177,3.15e-08,29;UBERON:0005057,3.15e-08,29;UBERON:0002390,4.41e-08,45;UBERON:0003061,4.41e-08,45;UBERON:0002370,5.83e-08,23;UBERON:0000974,5.83e-08,23;UBERON:0004807,5.83e-08,23;UBERON:0005058,5.83e-08,23;UBERON:0003351,5.83e-08,23;UBERON:0009113,5.83e-08,23;UBERON:0003295,5.83e-08,23;UBERON:0009722,5.83e-08,23;UBERON:0005562,5.83e-08,23;UBERON:0007690,5.83e-08,23;UBERON:0000065,7.95e-08,41;UBERON:0000153,1.29e-07,43;UBERON:0002193,1.41e-07,48;UBERON:0002405,1.41e-07,48;UBERON:0001004,2.37e-07,42;UBERON:0006562,2.64e-07,24;UBERON:0001557,2.64e-07,24;UBERON:0001042,2.64e-07,24;UBERON:0008814,2.64e-07,24;UBERON:0009145,2.64e-07,24;UBERON:0003408,2.85e-07,24;UBERON:0002384,5.01e-07,46;UBERON:0007811,6.75e-07,36|phase1_expression=13.6126520039075,2.09385244583617,0.909998478779072,1.20985684522732,2.00358291978539,7.89032577985882,10.0453435456076,18.8520052224701,52.2326159182684,50.7920022118726,87.149945826782,97.1624896563197,20.0304854019511,20.1941129587884,11.3257319017325,9.31386229993199,5.59649502502517,15.1421839371954,13.9856722277854,13.1560792057389,7.48380953329414,18.2695350209629,15.9331871374751,8.63959083084396,8.25873411841812,1.14846392823004,4.30761996159075,8.40337807474967,6.65081968097309,6.04872311423834,9.97787297948871,15.2407361630311,18.4519436275371,47.5445043046316,9.82095507154334,17.2884031172832,11.2293145944303,2.51118978442145,2.3440060335714,2.09409497589519,1.76469446409304,0.683045484958446,2.42755176515577,10.5753327099485,10.0363161907319,10.8292583775392,19.559783608701,10.4652075062614,7.0299578475031,5.8328969722285,12.738764367908,17.2503077237966,24.3284778783718,27.5637613964311,26.8875039313971,10.5476368774738,11.1748041576115,7.21940929188419,10.7227724255587,11.1088105647127,9.50747105259269,14.5703148789727,18.6751907183339,17.0980946283466,14.8329954385046,14.9200824138681,17.9760066311043,16.9056054341484,12.4427534770173,16.2007125998029,12.4091727197315,7.9982275633065,7.28866185140325,13.4739879136449,12.3640657613525,16.5459381589804,18.7196997698961,6.76742891851495,7.98753972932466,10.1552441552249,10.0636407962651,9.89735404057844,6.42120897703176,3.93933827022176,9.77908785771585,10.3120004915784,5.69486723196412,9.50637173709033,16.5083101466341,6.8014404096107,3.76823835312181,2.58127163094416,18.3592260101093,5.93673510801599,5.84798775702902,4.48026887097336,6.46044332606059,15.1682987094471,16.8860902991865,12.7202246823722,11.1266301623578,7.69958864485907,10.1922095882658,0,16.4533191168523,18.7486300451573,19.2099289105618,6.16592950482924,14.5005214842416,9.35185476108396,16.654591369549,14.6143429589828,11.0695438682908,11.3041980414467,10.1126288136706,7.53999547978053,5.6854842578906,5.35017620603673,5.30766331169925,9.05894359705491,6.62524555381181,8.24287930329878,5.59175283654366,14.0534782565543,8.3778682725382,6.64188343542338,13.7787393181808,16.7972764678154,13.0882333885257,6.5907881338122,8.6925114535539,8.92145900001337,3.99795936442236,5.8814555185976,6.64921742590592,6.00292673350703,13.9519928474933,8.95730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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68147 | |||
|HGNC= | |||
|MCL_coexpression_id=301 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=18bp_to_ENSMUST00000128441_5end | |||
|cluster_id=chr3:129534207..129534259,- | |||
|description=CAGE_peak_2_at_Gar1_5end | |||
|id=chr3:129534207..129534259,- | |||
|ontology_enrichment_celltype=CL:0000542!7.62e-09!13;CL:0000051!7.62e-09!13;CL:0000838!2.76e-08!12;CL:0000988!3.48e-08!32;CL:0002032!3.48e-08!32;CL:0000037!3.48e-08!32;CL:0000566!3.48e-08!32;CL:0000837!3.48e-08!32;CL:0000084!1.10e-07!11;CL:0000827!1.10e-07!11;CL:0000791!4.31e-07!9;CL:0000789!4.31e-07!9;CL:0002420!4.31e-07!9;CL:0002419!4.31e-07!9;CL:0000790!4.31e-07!9;CL:0002320!5.01e-07!46;CL:0000134!5.01e-07!46;CL:0000738!6.19e-07!17;CL:0002087!6.19e-07!17;CL:0000034!8.93e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.62e-09,13;CL:0000051,7.62e-09,13;CL:0000838,2.76e-08,12;CL:0000988,3.48e-08,32;CL:0002032,3.48e-08,32;CL:0000037,3.48e-08,32;CL:0000837,3.48e-08,32;CL:0000084,1.10e-07,11;CL:0000827,1.10e-07,11;CL:0000791,4.31e-07,9;CL:0000789,4.31e-07,9;CL:0002420,4.31e-07,9;CL:0002419,4.31e-07,9;CL:0000790,4.31e-07,9;CL:0002320,5.01e-07,46;CL:0000134,5.01e-07,46;CL:0000738,6.19e-07,17;CL:0002087,6.19e-07,17;CL:0000034,8.93e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000072!1.51e-08!27;UBERON:0004177!3.18e-08!29;UBERON:0002390!4.44e-08!45;UBERON:0003061!4.44e-08!45;UBERON:0002370!5.89e-08!23;UBERON:0000974!5.89e-08!23;UBERON:0004807!5.89e-08!23;UBERON:0005058!5.89e-08!23;UBERON:0003351!5.89e-08!23;UBERON:0009113!5.89e-08!23;UBERON:0003295!5.89e-08!23;UBERON:0009722!5.89e-08!23;UBERON:0005562!5.89e-08!23;UBERON:0007690!5.89e-08!23;UBERON:0000065!8.01e-08!41;UBERON:0002193!1.42e-07!48;UBERON:0001004!2.38e-07!42;UBERON:0006562!2.66e-07!24;UBERON:0001557!2.66e-07!24;UBERON:0001042!2.66e-07!24;UBERON:0008814!2.66e-07!24;UBERON:0009145!2.66e-07!24;UBERON:0003408!2.88e-07!24;UBERON:0002384!5.01e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,1.50e-08,27;UBERON:0004177,3.15e-08,29;UBERON:0005057,3.15e-08,29;UBERON:0002390,4.41e-08,45;UBERON:0003061,4.41e-08,45;UBERON:0002370,5.83e-08,23;UBERON:0000974,5.83e-08,23;UBERON:0004807,5.83e-08,23;UBERON:0005058,5.83e-08,23;UBERON:0003351,5.83e-08,23;UBERON:0009113,5.83e-08,23;UBERON:0003295,5.83e-08,23;UBERON:0009722,5.83e-08,23;UBERON:0005562,5.83e-08,23;UBERON:0007690,5.83e-08,23;UBERON:0000065,7.95e-08,41;UBERON:0000153,1.29e-07,43;UBERON:0002193,1.41e-07,48;UBERON:0002405,1.41e-07,48;UBERON:0001004,2.37e-07,42;UBERON:0006562,2.64e-07,24;UBERON:0001557,2.64e-07,24;UBERON:0001042,2.64e-07,24;UBERON:0008814,2.64e-07,24;UBERON:0009145,2.64e-07,24;UBERON:0003408,2.85e-07,24;UBERON:0002384,5.01e-07,46;UBERON:0007811,6.75e-07,36 | |||
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| |||
|short_description=p2@Gar1 | |||
}} |
Latest revision as of 14:33, 1 October 2015
Short description: | p2@Gar1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gar1_5end |
Coexpression cluster: | MCL_coexpression_mm9:301 |
Association with transcript: | 18bp_to_ENSMUST00000128441_5end |
EntrezGene: | Gar1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.62e-09 | 13 |
common lymphoid progenitor | 7.62e-09 | 13 |
lymphoid lineage restricted progenitor cell | 2.76e-08 | 12 |
hematopoietic cell | 3.48e-08 | 32 |
hematopoietic oligopotent progenitor cell | 3.48e-08 | 32 |
hematopoietic stem cell | 3.48e-08 | 32 |
hematopoietic multipotent progenitor cell | 3.48e-08 | 32 |
T cell | 1.10e-07 | 11 |
pro-T cell | 1.10e-07 | 11 |
mature alpha-beta T cell | 4.31e-07 | 9 |
alpha-beta T cell | 4.31e-07 | 9 |
immature T cell | 4.31e-07 | 9 |
mature T cell | 4.31e-07 | 9 |
immature alpha-beta T cell | 4.31e-07 | 9 |
connective tissue cell | 5.01e-07 | 46 |
mesenchymal cell | 5.01e-07 | 46 |
leukocyte | 6.19e-07 | 17 |
nongranular leukocyte | 6.19e-07 | 17 |
stem cell | 8.93e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 1.50e-08 | 27 |
hemopoietic organ | 3.15e-08 | 29 |
immune organ | 3.15e-08 | 29 |
hematopoietic system | 4.41e-08 | 45 |
blood island | 4.41e-08 | 45 |
thymus | 5.83e-08 | 23 |
neck | 5.83e-08 | 23 |
respiratory system epithelium | 5.83e-08 | 23 |
hemolymphoid system gland | 5.83e-08 | 23 |
pharyngeal epithelium | 5.83e-08 | 23 |
thymic region | 5.83e-08 | 23 |
pharyngeal gland | 5.83e-08 | 23 |
entire pharyngeal arch endoderm | 5.83e-08 | 23 |
thymus primordium | 5.83e-08 | 23 |
early pharyngeal endoderm | 5.83e-08 | 23 |
respiratory tract | 7.95e-08 | 41 |
anterior region of body | 1.29e-07 | 43 |
hemolymphoid system | 1.41e-07 | 48 |
immune system | 1.41e-07 | 48 |
respiratory system | 2.37e-07 | 42 |
pharynx | 2.64e-07 | 24 |
upper respiratory tract | 2.64e-07 | 24 |
chordate pharynx | 2.64e-07 | 24 |
pharyngeal arch system | 2.64e-07 | 24 |
pharyngeal region of foregut | 2.64e-07 | 24 |
gland of gut | 2.85e-07 | 24 |
connective tissue | 5.01e-07 | 46 |
craniocervical region | 6.75e-07 | 36 |