FFCP PHASE1:Hg19::chr12:56114169..56114185,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5959 | |EntrezGene=5959 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9940 | |HGNC=9940 | ||
|TSSclassifier=strong | |||
|UniProt=Q92781,F8VUB9 | |UniProt=Q92781,F8VUB9 | ||
|association_with_transcript=0bp_to_ENST00000257895,ENST00000548486,ENST00000552930,ENST00000553187_5end | |association_with_transcript=0bp_to_ENST00000257895,ENST00000548486,ENST00000552930,ENST00000553187_5end | ||
|cluster_id=chr12:56114169..56114185,+ | |||
|coexpression_cluster_id=C29 | |||
|description=CAGE_peak_1_at_RDH5_5end | |description=CAGE_peak_1_at_RDH5_5end | ||
|id=chr12:56114169..56114185,+ | |id=chr12:56114169..56114185,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.69e-26!180;CL:0000057!2.03e-16!75;CL:0000680!4.18e-12!57;CL:0000056!4.18e-12!57;CL:0000355!4.18e-12!57;CL:0000183!1.09e-10!59;CL:0000187!1.32e-10!54;CL:0000136!1.98e-10!15;CL:0000192!7.75e-09!42;CL:0000514!7.75e-09!42;CL:0002620!1.23e-08!23;CL:0000393!2.65e-08!60;CL:0000211!2.65e-08!60;CL:0000359!2.76e-08!32 | |ontology_enrichment_celltype=CL:0000055!1.69e-26!180;CL:0000057!2.03e-16!75;CL:0000680!4.18e-12!57;CL:0000056!4.18e-12!57;CL:0000355!4.18e-12!57;CL:0000183!1.09e-10!59;CL:0000187!1.32e-10!54;CL:0000136!1.98e-10!15;CL:0000192!7.75e-09!42;CL:0000514!7.75e-09!42;CL:0002620!1.23e-08!23;CL:0000393!2.65e-08!60;CL:0000211!2.65e-08!60;CL:0000359!2.76e-08!32 | ||
|ontology_enrichment_celltype_v019=CL:0000136;5.81e-12;13!CL:0002620;7.67e-10;23!CL:0000359;1.52e-08;32!CL:0000192;5.55e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.55e-15,76;CL:0000136,1.27e-12,15;CL:0000680,1.73e-12,58;CL:0000056,1.73e-12,58;CL:0000355,1.73e-12,58;CL:0000187,9.53e-11,55;CL:0002620,6.34e-10,23;CL:0000359,8.91e-09,32;CL:0000393,1.55e-08,61;CL:0000211,1.55e-08,61;CL:0000192,3.69e-08,43;CL:0000514,3.69e-08,43;CL:0000048,6.14e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;5.55e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.02e-20!83;UBERON:0002329!3.02e-20!83;UBERON:0003077!3.02e-20!83;UBERON:0003059!3.02e-20!83;UBERON:0007282!3.02e-20!83;UBERON:0009618!3.02e-20!83;UBERON:0007285!3.02e-20!83;UBERON:0004290!4.03e-17!70;UBERON:0000475!4.64e-17!365;UBERON:0002385!3.04e-14!63;UBERON:0001015!3.04e-14!63;UBERON:0000383!3.04e-14!63;UBERON:0001134!1.23e-13!61;UBERON:0002036!1.23e-13!61;UBERON:0003082!1.23e-13!61;UBERON:0000481!1.75e-13!347;UBERON:0000486!4.87e-13!82;UBERON:0005256!3.10e-12!143;UBERON:0003102!1.08e-10!95;UBERON:0002199!8.24e-09!45;UBERON:0002416!8.24e-09!45;UBERON:0000119!1.71e-08!312;UBERON:0002100!2.08e-08!216;UBERON:0000483!2.16e-08!309;UBERON:0000468!3.42e-08!659;UBERON:0003104!3.06e-07!238;UBERON:0009142!3.06e-07!238;UBERON:0004573!4.25e-07!33;UBERON:0004571!4.25e-07!33;UBERON:0000479!5.08e-07!787;UBERON:0001637!6.58e-07!42;UBERON:0003509!6.58e-07!42;UBERON:0004572!6.58e-07!42 | |ontology_enrichment_uberon=UBERON:0000914!3.02e-20!83;UBERON:0002329!3.02e-20!83;UBERON:0003077!3.02e-20!83;UBERON:0003059!3.02e-20!83;UBERON:0007282!3.02e-20!83;UBERON:0009618!3.02e-20!83;UBERON:0007285!3.02e-20!83;UBERON:0004290!4.03e-17!70;UBERON:0000475!4.64e-17!365;UBERON:0002385!3.04e-14!63;UBERON:0001015!3.04e-14!63;UBERON:0000383!3.04e-14!63;UBERON:0001134!1.23e-13!61;UBERON:0002036!1.23e-13!61;UBERON:0003082!1.23e-13!61;UBERON:0000481!1.75e-13!347;UBERON:0000486!4.87e-13!82;UBERON:0005256!3.10e-12!143;UBERON:0003102!1.08e-10!95;UBERON:0002199!8.24e-09!45;UBERON:0002416!8.24e-09!45;UBERON:0000119!1.71e-08!312;UBERON:0002100!2.08e-08!216;UBERON:0000483!2.16e-08!309;UBERON:0000468!3.42e-08!659;UBERON:0003104!3.06e-07!238;UBERON:0009142!3.06e-07!238;UBERON:0004573!4.25e-07!33;UBERON:0004571!4.25e-07!33;UBERON:0000479!5.08e-07!787;UBERON:0001637!6.58e-07!42;UBERON:0003509!6.58e-07!42;UBERON:0004572!6.58e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.67e-12;31!UBERON:0001015;1.67e-12;31!UBERON:0000383;1.67e-12;31!UBERON:0001134;2.05e-10;16!UBERON:0002036;2.05e-10;16!UBERON:0002204;3.31e-10;70!UBERON:0004573;5.20e-08;33!UBERON:0004571;5.20e-08;33!UBERON:0002199;2.20e-07;46!UBERON:0002416;2.20e-07;46!UBERON:0002384;4.14e-07;198!UBERON:0001013;6.90e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.79e-18,71;UBERON:0003059,1.79e-18,71;UBERON:0007282,1.79e-18,71;UBERON:0004290,1.79e-18,71;UBERON:0009618,1.79e-18,71;UBERON:0007524,4.22e-18,73;UBERON:0003077,5.94e-18,72;UBERON:0007285,5.94e-18,72;UBERON:0000486,3.26e-15,83;UBERON:0007503,3.85e-15,78;UBERON:0002385,4.94e-15,64;UBERON:0001015,4.94e-15,64;UBERON:0000383,4.94e-15,64;UBERON:0001134,2.65e-14,62;UBERON:0002036,2.65e-14,62;UBERON:0003082,2.65e-14,62;UBERON:0005256,2.31e-11,122;UBERON:0002199,3.92e-11,46;UBERON:0002416,3.92e-11,46;UBERON:0003102,4.21e-11,99;UBERON:0003104,1.54e-10,160;UBERON:0009142,1.54e-10,160;UBERON:0004573,9.75e-09,33;UBERON:0004571,9.75e-09,33;UBERON:0001637,1.96e-08,42;UBERON:0003509,1.96e-08,42;UBERON:0004572,1.96e-08,42;UBERON:0002097,2.12e-08,41;UBERON:0000479,5.89e-07,773;UBERON:0001013,7.03e-07,14 | |||
|phase1_expression=2.72517568905835,83.9274053652654,30.8690144970177,12.0087958023756,52.2944480479927,1.74467704820074,177.309914717817,21.4784756965123,123.801987766723,0,0,0,0,31.0653545929717,25.8489953067774,2.01697543935533,6.02694528023977,3.65155045193687,3.41552959153355,0.246242116153576,2.65200898617529,1.56727360739044,1.71741592278634,2.05311637609326,2.00868223351684,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,15.1804444001518,11.5307719446255,14.9191914529648,1.5905718941022,3.89307896242109,1.89069634328136,4.21285855178871,1.14185221401064,1.17881167947941,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,3.4409383804245,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0.436094052142534,4.47274756525787,3.03913227994991,13.7705548045748,8.03142538096678,1.41867352879343,2.80338800071154,1.06748995729705,0.49333509683432,3.7345324247972,0,0.163461903113459,0.454072282934794,0,0.937285727335186,22.7876856086134,10.2684927878001,21.2217126383558,2.81842796745036,2.91371299862637,1.96631129383148,33.4812840858025,4.79053837515895,22.8349976398442,13.0680314301026,7.17074094907815,9.10161361938026,5.74894513452991,8.58514181165738,4.8796222750066,10.2513722729148,8.34057479673592,19.9217067269363,17.878329009885,0.340296549480063,4.30535125653269,6.83383644219416,5.08636562782948,5.40163972951924,6.28620428354477,2.31876486041066,2.23340227597908,3.88185564154912,0.389748020644795,3.5340728394176,5.06274442532646,6.7891343863901,8.52023022039874,3.22406714328449,3.39121184620975,0,0,0,0,0,0.116193942869518,0,0,0,3.12899064659632,5.78916844373597,2.76269842704961,12.0735661288315,59.194117496906,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,2.94017422771084,3.80265104465493,6.87979051674338,1.77236972004421,0,0.737930631258681,1.20097467208968,0,0,0,0,0,7.27954349695705,0,0.115930404975077,0.70445216541493,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.268675568108545,0,1.91691339582606,0,0,0,0,0,0.063497894292169,0,0,11.9750712215894,0.102827492703324,0.901029173531752,0,0.224262168690721,0.43596006883328,0.07333828582095,0.387815147273333,42.9187735022259,0,0.26593811658487,0,8.48784335065069,21.2773698034917,12.5218424137567,0,1.08524321078289,0,0.325736184293735,0,0.791951872933429,0.301439377059586,1.74306691720059,1.19967589418468,0,0,0,4.0736225433569,13.7834323000937,4.27910715122155,16.6498502667716,9.65738715986802,14.5039380224315,0,0,0,0,2.7950408664471,0,0,0.167516265334349,0,0,0,0,3.31267027641678,6.00204625271613,7.05289061619313,2.9115920614313,10.8841683166269,3.46945313074656,11.5970000842786,6.62081419400982,6.82222512167955,8.27784570340039,1.99267679560631,2.21243002250044,7.21134000085088,2.15381273209015,4.46086450954113,0,0,0,0,0,1.5119514666484,0.992431231275107,0.306923946576125,0.561320188866147,1.92208723883551,0,0.482561763430822,1.48418066444991,2.31314540703983,5.14929003408069,7.39144404124282,2.59627214591811,4.99704627377825,0,0,0,0.34444334449382,1.45672934405374,0.393373244878272,0,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,10.0015548795392,2.29610251989794,14.9674061545579,3.40035338437484,0,0,0,0,8.03419649220798,1.25671933779759,12.0157921349423,11.2057682550075,8.95937721149449,2.79292636657511,10.5862186557387,4.94314439013385,3.47224939022276,0,0,0.382838137483752,0,2.32422774648643,11.333244485903,2.0911118104818,2.7723022215848,4.7907542728532,4.34966496037536,1.48259375283136,3.00562262158182,0,8.85862389212432,0.571890581771475,11.51540060901,2.56763392820352,14.955552652519,2.35484592059769,0.899362287916574,0.274537029736055,0.589062011728432,6.87420437349274,26.9467545994114,2.52755073743389,0,0.974853958525138,2.11300293513511,0.818999468447914,0,9.04064932961942,0,9.28814565337708,14.9073300986279,8.68163301400032,1.9676842561399,1.42037263873893,3.717881977197,1.97186921772569,0.143411352204052,0,1.07001315444375,5.32141596105897,40.7437736124492,59.9316705187021,1.89736586882858,6.99869440489966,0,0,0,3.29503302718727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,55.233583585504,0,0,0.568272293612826,0,0,0,0,0.281338832821026,0,0,0,6.5751836122853,3.31540698637377,0.251932747854276,0.920418142519393,0,15.5519793830904,0,0.179021174675609,0,2.46608514092334,0,5.55684950723184,0,0.556608588971108,0,0,0,23.9249859893482,0,0.508507300585533,0,0,0,0.347249989866585,0,0.120596438625408,0,0,0,0.658156191461918,0,0,0.615602068030377,0,0,0,0,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,8.95735737970654,5.83819925722038,0.611030144933625,0,0,0,0.741412462787447,8.02577647298789,0.234264445725339,0,0,1.45668227720456,1.97292201424695,1.20990716048664,0,2.71702292402498,0,0,0,0,0,0,0.2846095460297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| ||
|short_description=p1@RDH5 | |short_description=p1@RDH5 | ||
}} | }} |
Latest revision as of 07:59, 19 September 2015
Short description: | p1@RDH5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RDH5_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | 0bp_to_ENST00000257895, ENST00000548486, ENST00000552930, ENST00000553187_5end |
EntrezGene: | RDH5 |
HGNC: | 9940 |
UniProt: | Q92781F8VUB9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.55e-15 | 76 |
fat cell | 1.27e-12 | 15 |
muscle precursor cell | 1.73e-12 | 58 |
myoblast | 1.73e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.73e-12 | 58 |
muscle cell | 9.53e-11 | 55 |
skin fibroblast | 6.34e-10 | 23 |
vascular associated smooth muscle cell | 8.91e-09 | 32 |
electrically responsive cell | 1.55e-08 | 61 |
electrically active cell | 1.55e-08 | 61 |
smooth muscle cell | 3.69e-08 | 43 |
smooth muscle myoblast | 3.69e-08 | 43 |
multi fate stem cell | 6.14e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
somite | 1.79e-18 | 71 |
presomitic mesoderm | 1.79e-18 | 71 |
presumptive segmental plate | 1.79e-18 | 71 |
dermomyotome | 1.79e-18 | 71 |
trunk paraxial mesoderm | 1.79e-18 | 71 |
dense mesenchyme tissue | 4.22e-18 | 73 |
paraxial mesoderm | 5.94e-18 | 72 |
presumptive paraxial mesoderm | 5.94e-18 | 72 |
multilaminar epithelium | 3.26e-15 | 83 |
epithelial vesicle | 3.85e-15 | 78 |
muscle tissue | 4.94e-15 | 64 |
musculature | 4.94e-15 | 64 |
musculature of body | 4.94e-15 | 64 |
skeletal muscle tissue | 2.65e-14 | 62 |
striated muscle tissue | 2.65e-14 | 62 |
myotome | 2.65e-14 | 62 |
trunk mesenchyme | 2.31e-11 | 122 |
integument | 3.92e-11 | 46 |
integumental system | 3.92e-11 | 46 |
surface structure | 4.21e-11 | 99 |
mesenchyme | 1.54e-10 | 160 |
entire embryonic mesenchyme | 1.54e-10 | 160 |
systemic artery | 9.75e-09 | 33 |
systemic arterial system | 9.75e-09 | 33 |
artery | 1.96e-08 | 42 |
arterial blood vessel | 1.96e-08 | 42 |
arterial system | 1.96e-08 | 42 |
skin of body | 2.12e-08 | 41 |
tissue | 5.89e-07 | 773 |
adipose tissue | 7.03e-07 | 14 |