FFCP PHASE1:Hg19::chr14:22320634..22320645,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12148 | |HGNC=12148 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-89bp_to_ENST00000390435_5end | |association_with_transcript=-89bp_to_ENST00000390435_5end | ||
|cluster_id=chr14:22320634..22320645,+ | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_TRAV8-3_5end | |description=CAGE_peak_1_at_TRAV8-3_5end | ||
|id=chr14:22320634..22320645,+ | |id=chr14:22320634..22320645,+ | ||
|ontology_enrichment_celltype=CL:0000791!5.00e-42!18;CL:0000789!5.00e-42!18;CL:0002420!5.00e-42!18;CL:0002419!5.00e-42!18;CL:0000790!5.00e-42!18;CL:0000084!1.50e-33!25;CL:0000827!1.50e-33!25;CL:0000625!1.19e-28!11;CL:0000838!4.67e-21!52;CL:0000542!1.41e-20!53;CL:0000051!1.41e-20!53;CL:0000624!1.24e-17!6;CL:0000623!1.94e-12!3;CL:0000825!1.94e-12!3;CL:0002087!3.49e-12!119;CL:0000738!1.27e-10!140;CL:0002031!2.56e-10!124;CL:0000815!2.24e-09!2;CL:0000792!2.24e-09!2;CL:0002677!2.24e-09!2;CL:0000988!9.64e-08!182;CL:0000037!1.14e-07!172;CL:0000566!1.14e-07!172;CL:0002032!2.33e-07!165;CL:0000837!2.33e-07!165 | |ontology_enrichment_celltype=CL:0000791!5.00e-42!18;CL:0000789!5.00e-42!18;CL:0002420!5.00e-42!18;CL:0002419!5.00e-42!18;CL:0000790!5.00e-42!18;CL:0000084!1.50e-33!25;CL:0000827!1.50e-33!25;CL:0000625!1.19e-28!11;CL:0000838!4.67e-21!52;CL:0000542!1.41e-20!53;CL:0000051!1.41e-20!53;CL:0000624!1.24e-17!6;CL:0000623!1.94e-12!3;CL:0000825!1.94e-12!3;CL:0002087!3.49e-12!119;CL:0000738!1.27e-10!140;CL:0002031!2.56e-10!124;CL:0000815!2.24e-09!2;CL:0000792!2.24e-09!2;CL:0002677!2.24e-09!2;CL:0000988!9.64e-08!182;CL:0000037!1.14e-07!172;CL:0000566!1.14e-07!172;CL:0002032!2.33e-07!165;CL:0000837!2.33e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.76e-09;18!CL:0000789;7.76e-09;18!CL:0002419;7.76e-09;18!CL:0000625;6.54e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.76e-09,18;CL:0000789,8.76e-09,18;CL:0002420,8.76e-09,18;CL:0002419,8.76e-09,18;CL:0000790,8.76e-09,18;CL:0000625,7.15e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.51e-09;2!CL:0000790;7.76e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.31e-34;2!UBERON:0005058;1.31e-34;2!UBERON:0009113;1.31e-34;2!UBERON:0004177;1.72e-14;5!UBERON:0005057;1.72e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.79e-18,4;UBERON:0005058,6.79e-18,4;UBERON:0009113,6.79e-18,4;UBERON:0003295,6.79e-18,4;UBERON:0005562,6.79e-18,4;UBERON:0003351,2.91e-12,6;UBERON:0004177,1.21e-10,7;UBERON:0005057,1.21e-10,7;UBERON:0000974,1.02e-07,10;UBERON:0003408,1.02e-07,10;UBERON:0001042,1.02e-07,10;UBERON:0009145,1.02e-07,10;UBERON:0006562,4.30e-07,11;UBERON:0009722,4.30e-07,11;UBERON:0007690,4.30e-07,11 | |||
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|short_description=p1@TRAV8-3 | |short_description=p1@TRAV8-3 | ||
}} | }} |
Latest revision as of 03:53, 19 September 2015
Short description: | p1@TRAV8-3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAV8-3_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | -89bp_to_ENST00000390435_5end |
EntrezGene: | NA |
HGNC: | 12148 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.76e-09 | 18 |
alpha-beta T cell | 8.76e-09 | 18 |
immature T cell | 8.76e-09 | 18 |
mature T cell | 8.76e-09 | 18 |
immature alpha-beta T cell | 8.76e-09 | 18 |
CD8-positive, alpha-beta T cell | 7.15e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.79e-18 | 4 |
hemolymphoid system gland | 6.79e-18 | 4 |
thymic region | 6.79e-18 | 4 |
pharyngeal gland | 6.79e-18 | 4 |
thymus primordium | 6.79e-18 | 4 |
pharyngeal epithelium | 2.91e-12 | 6 |
hemopoietic organ | 1.21e-10 | 7 |
immune organ | 1.21e-10 | 7 |
neck | 1.02e-07 | 10 |
gland of gut | 1.02e-07 | 10 |
chordate pharynx | 1.02e-07 | 10 |
pharyngeal region of foregut | 1.02e-07 | 10 |
pharynx | 4.30e-07 | 11 |
entire pharyngeal arch endoderm | 4.30e-07 | 11 |
early pharyngeal endoderm | 4.30e-07 | 11 |