FFCP PHASE1:Hg19::chr15:56331027..56331040,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:56331027..56331040,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr15:56331027..56331040,- | |description=CAGE_peak_at_chr15:56331027..56331040,- | ||
|id=chr15:56331027..56331040,- | |id=chr15:56331027..56331040,- | ||
|ontology_enrichment_celltype=CL:0002057!5.94e-35!42;CL:0000860!3.45e-32!45;CL:0002009!5.16e-24!65;CL:0002194!9.57e-23!63;CL:0000576!9.57e-23!63;CL:0000040!9.57e-23!63;CL:0000559!9.57e-23!63;CL:0002087!1.92e-21!119;CL:0000557!1.93e-21!71;CL:0002031!2.49e-20!124;CL:0000839!7.41e-20!70;CL:0000738!1.50e-19!140;CL:0000766!1.87e-19!76;CL:0000037!3.11e-14!172;CL:0000566!3.11e-14!172;CL:0002032!3.74e-14!165;CL:0000837!3.74e-14!165;CL:0000988!5.79e-13!182;CL:0000763!2.34e-12!112;CL:0000049!2.34e-12!112 | |ontology_enrichment_celltype=CL:0002057!5.94e-35!42;CL:0000860!3.45e-32!45;CL:0002009!5.16e-24!65;CL:0002194!9.57e-23!63;CL:0000576!9.57e-23!63;CL:0000040!9.57e-23!63;CL:0000559!9.57e-23!63;CL:0002087!1.92e-21!119;CL:0000557!1.93e-21!71;CL:0002031!2.49e-20!124;CL:0000839!7.41e-20!70;CL:0000738!1.50e-19!140;CL:0000766!1.87e-19!76;CL:0000037!3.11e-14!172;CL:0000566!3.11e-14!172;CL:0002032!3.74e-14!165;CL:0000837!3.74e-14!165;CL:0000988!5.79e-13!182;CL:0000763!2.34e-12!112;CL:0000049!2.34e-12!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.82e-31;33!CL:0002057;3.82e-31;33!CL:0000473;2.81e-22;39!CL:0000234;2.81e-22;39!CL:0000576;4.94e-20;48!CL:0000766;2.31e-15;69!CL:0002393;5.08e-13;6!CL:0002397;5.08e-13;6!CL:0002087;4.63e-09;104!CL:0000763;1.65e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.30e-42,42;CL:0002057,4.30e-42,42;CL:0000473,1.62e-36,48;CL:0000234,1.62e-36,48;CL:0002009,1.19e-31,61;CL:0002194,1.05e-28,59;CL:0000576,1.05e-28,59;CL:0000040,1.05e-28,59;CL:0000559,1.05e-28,59;CL:0000557,1.29e-28,67;CL:0000839,1.95e-25,66;CL:0000766,3.93e-23,72;CL:0000763,8.28e-17,108;CL:0000049,8.28e-17,108;CL:0002031,7.32e-15,120;CL:0002087,1.39e-13,115;CL:0000738,8.52e-13,136;CL:0002032,2.21e-10,161;CL:0000837,2.21e-10,161;CL:0000037,7.80e-10,168;CL:0000988,3.42e-09,177;CL:0002393,8.76e-09,9;CL:0002397,8.76e-09,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.40e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;3.74e-10;1!DOID:4549;3.74e-10;1!DOID:5861;3.74e-10;1!DOID:6496;3.74e-10;1!DOID:3111;2.36e-09;1!DOID:6193;2.36e-09;1!DOID:3603;2.36e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,3.74e-10,1;DOID:4549,3.74e-10,1;DOID:5861,3.74e-10,1;DOID:6496,3.74e-10,1;DOID:3111,2.08e-09,1;DOID:3603,2.08e-09,1;DOID:6193,2.67e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.64e-18!80;UBERON:0001474!2.81e-18!86;UBERON:0004765!5.55e-16!101;UBERON:0001434!5.55e-16!101;UBERON:0002390!3.16e-14!102;UBERON:0003061!3.16e-14!102;UBERON:0002405!3.60e-14!115;UBERON:0002193!2.25e-12!112;UBERON:0002204!1.68e-08!167 | |ontology_enrichment_uberon=UBERON:0002371!2.64e-18!80;UBERON:0001474!2.81e-18!86;UBERON:0004765!5.55e-16!101;UBERON:0001434!5.55e-16!101;UBERON:0002390!3.16e-14!102;UBERON:0003061!3.16e-14!102;UBERON:0002405!3.60e-14!115;UBERON:0002193!2.25e-12!112;UBERON:0002204!1.68e-08!167 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.20e-26,90;UBERON:0001474,3.40e-26,82;UBERON:0002371,5.96e-25,76;UBERON:0001434,1.05e-23,100;UBERON:0002405,6.16e-20,93;UBERON:0002390,8.66e-19,98;UBERON:0003061,8.66e-19,98;UBERON:0002193,8.28e-17,108;UBERON:0002204,5.21e-13,167;UBERON:0003081,1.17e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,2.21598163412751,3.20871115952227,2.17010870715852,0,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0.575384784644301,0,0.236482229888585,2.75796544589295,3.87290810150296,4.06279459783025,0,0,0.224723484445085,1.53041946185451,2.24650318953266,2.55734850319616,0,0,0,4.06292934080018,10.2129340444405,5.60540024096017,0.251248665256743,0.521482918420201,0,3.02699751316684,13.9945501675275,8.54448446090388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,2.80254281490768,0,0.393419540227666,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,1.87467667973554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.76455387365216,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,1.37588825977293,0,0,0,0,112.438305404971,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0.0846733320657845,0,0,0,0,0,2.4747128070665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,4.69789725537381,0,0,0.489473409012935,0,0,0.219284049578707,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,1.90180911022764,0.19998739585493,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,2.21598163412751,3.20871115952227,2.17010870715852,0,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0.575384784644301,0,0.236482229888585,2.75796544589295,3.87290810150296,4.06279459783025,0,0,0.224723484445085,1.53041946185451,2.24650318953266,2.55734850319616,0,0,0,4.06292934080018,10.2129340444405,5.60540024096017,0.251248665256743,0.521482918420201,0,3.02699751316684,13.9945501675275,8.54448446090388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,2.80254281490768,0,0.393419540227666,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,1.87467667973554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.76455387365216,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,1.37588825977293,0,0,0,0,112.438305404971,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0.0846733320657845,0,0,0,0,0,2.4747128070665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,4.69789725537381,0,0,0.489473409012935,0,0,0.219284049578707,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,1.90180911022764,0.19998739585493,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr15:56331027..56331040,- | |short_description=p@chr15:56331027..56331040,- | ||
}} | }} |
Latest revision as of 02:42, 25 July 2015
Short description: | p@chr15:56331027..56331040, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr15:56331027..56331040, - |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.30e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.30e-42 | 42 |
defensive cell | 1.62e-36 | 48 |
phagocyte | 1.62e-36 | 48 |
macrophage dendritic cell progenitor | 1.19e-31 | 61 |
monopoietic cell | 1.05e-28 | 59 |
monocyte | 1.05e-28 | 59 |
monoblast | 1.05e-28 | 59 |
promonocyte | 1.05e-28 | 59 |
granulocyte monocyte progenitor cell | 1.29e-28 | 67 |
myeloid lineage restricted progenitor cell | 1.95e-25 | 66 |
myeloid leukocyte | 3.93e-23 | 72 |
myeloid cell | 8.28e-17 | 108 |
common myeloid progenitor | 8.28e-17 | 108 |
hematopoietic lineage restricted progenitor cell | 7.32e-15 | 120 |
nongranular leukocyte | 1.39e-13 | 115 |
leukocyte | 8.52e-13 | 136 |
hematopoietic oligopotent progenitor cell | 2.21e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.21e-10 | 161 |
hematopoietic stem cell | 7.80e-10 | 168 |
hematopoietic cell | 3.42e-09 | 177 |
intermediate monocyte | 8.76e-09 | 9 |
CD14-positive, CD16-positive monocyte | 8.76e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.20e-26 | 90 |
bone element | 3.40e-26 | 82 |
bone marrow | 5.96e-25 | 76 |
skeletal system | 1.05e-23 | 100 |
immune system | 6.16e-20 | 93 |
hematopoietic system | 8.66e-19 | 98 |
blood island | 8.66e-19 | 98 |
hemolymphoid system | 8.28e-17 | 108 |
musculoskeletal system | 5.21e-13 | 167 |
lateral plate mesoderm | 1.17e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 3.74e-10 | 1 |
extraosseous chondrosarcoma | 3.74e-10 | 1 |
myxoid chondrosarcoma | 3.74e-10 | 1 |
extraskeletal myxoid chondrosarcoma | 3.74e-10 | 1 |
cystadenocarcinoma | 2.08e-09 | 1 |
mucinous cystadenocarcinoma | 2.08e-09 | 1 |
epithelioid sarcoma | 2.67e-09 | 1 |