FFCP PHASE1:Hg19::chr1:25889278..25889291,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26119 | |EntrezGene=26119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18640 | |HGNC=18640 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc009vrw.2_5end | |association_with_transcript=0bp_to_uc009vrw.2_5end | ||
|cluster_id=chr1:25889278..25889291,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_LDLRAP1_5end | |description=CAGE_peak_2_at_LDLRAP1_5end | ||
|id=chr1:25889278..25889291,+ | |id=chr1:25889278..25889291,+ | ||
|ontology_enrichment_celltype=CL:0002087!1.69e-28!119;CL:0000738!1.83e-25!140;CL:0000791!8.99e-24!18;CL:0000789!8.99e-24!18;CL:0002420!8.99e-24!18;CL:0002419!8.99e-24!18;CL:0000790!8.99e-24!18;CL:0002031!8.73e-22!124;CL:0000542!1.03e-18!53;CL:0000051!1.03e-18!53;CL:0000838!7.84e-18!52;CL:0000084!2.56e-17!25;CL:0000827!2.56e-17!25;CL:0000625!2.81e-17!11;CL:0000037!4.22e-17!172;CL:0000566!4.22e-17!172;CL:0002032!6.66e-16!165;CL:0000837!6.66e-16!165;CL:0000988!3.84e-15!182;CL:0000624!7.03e-10!6;CL:0002057!5.20e-09!42;CL:0000766!7.48e-09!76;CL:0002194!1.09e-08!63;CL:0000576!1.09e-08!63;CL:0000040!1.09e-08!63;CL:0000559!1.09e-08!63;CL:0002009!3.29e-08!65;CL:0000860!4.90e-08!45;CL:0000839!3.87e-07!70;CL:0000557!6.04e-07!71 | |ontology_enrichment_celltype=CL:0002087!1.69e-28!119;CL:0000738!1.83e-25!140;CL:0000791!8.99e-24!18;CL:0000789!8.99e-24!18;CL:0002420!8.99e-24!18;CL:0002419!8.99e-24!18;CL:0000790!8.99e-24!18;CL:0002031!8.73e-22!124;CL:0000542!1.03e-18!53;CL:0000051!1.03e-18!53;CL:0000838!7.84e-18!52;CL:0000084!2.56e-17!25;CL:0000827!2.56e-17!25;CL:0000625!2.81e-17!11;CL:0000037!4.22e-17!172;CL:0000566!4.22e-17!172;CL:0002032!6.66e-16!165;CL:0000837!6.66e-16!165;CL:0000988!3.84e-15!182;CL:0000624!7.03e-10!6;CL:0002057!5.20e-09!42;CL:0000766!7.48e-09!76;CL:0002194!1.09e-08!63;CL:0000576!1.09e-08!63;CL:0000040!1.09e-08!63;CL:0000559!1.09e-08!63;CL:0002009!3.29e-08!65;CL:0000860!4.90e-08!45;CL:0000839!3.87e-07!70;CL:0000557!6.04e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.61e-41;18!CL:0000789;1.61e-41;18!CL:0002419;1.61e-41;18!CL:0000625;1.66e-29;11!CL:0000084;1.65e-28;25!CL:0000624;2.50e-16;6!CL:0000542;3.43e-11;53!CL:0000898;3.41e-09;3!CL:0002087;8.92e-09;104!CL:0000226;1.05e-08;3!CL:0000842;1.05e-08;3!CL:0000623;3.28e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.63e-41,18;CL:0000789,1.63e-41,18;CL:0002420,1.63e-41,18;CL:0002419,1.63e-41,18;CL:0000790,1.63e-41,18;CL:0000625,1.69e-29,11;CL:0000084,1.66e-28,25;CL:0000827,1.66e-28,25;CL:0000542,8.34e-21,53;CL:0000051,8.34e-21,53;CL:0000838,1.80e-19,52;CL:0002087,2.80e-19,115;CL:0000738,5.04e-17,136;CL:0000624,2.51e-16,6;CL:0002031,2.34e-13,120;CL:0000037,5.67e-12,168;CL:0000988,6.77e-11,177;CL:0002032,3.51e-10,161;CL:0000837,3.51e-10,161;CL:0000898,3.36e-09,3;CL:0000226,1.04e-08,3;CL:0000842,1.04e-08,3;CL:0000623,3.16e-08,3;CL:0000825,3.16e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.61e-41;18!CL:0000051;3.43e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.52e-15!102;UBERON:0003061!3.52e-15!102;UBERON:0002193!1.57e-14!112;UBERON:0000178!1.07e-13!15;UBERON:0000179!1.07e-13!15;UBERON:0000463!1.07e-13!15;UBERON:0007023!2.17e-09!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.86e-24;15!UBERON:0000179;3.86e-24;15!UBERON:0000463;3.86e-24;15!UBERON:0002390;4.60e-16;32!UBERON:0002193;2.84e-11;42!UBERON:0004177;4.93e-08;5!UBERON:0005057;4.93e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.90e-24,15;UBERON:0000179,3.90e-24,15;UBERON:0000463,3.90e-24,15;UBERON:0002193,5.73e-12,108;UBERON:0002390,1.37e-11,98;UBERON:0003061,1.37e-11,98;UBERON:0004177,7.04e-09,7;UBERON:0005057,7.04e-09,7 | |||
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| ||
|short_description=p2@LDLRAP1 | |short_description=p2@LDLRAP1 | ||
}} | }} |
Latest revision as of 03:34, 17 September 2015
Short description: | p2@LDLRAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LDLRAP1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_uc009vrw.2_5end |
EntrezGene: | LDLRAP1 |
HGNC: | 18640 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.63e-41 | 18 |
alpha-beta T cell | 1.63e-41 | 18 |
immature T cell | 1.63e-41 | 18 |
mature T cell | 1.63e-41 | 18 |
immature alpha-beta T cell | 1.63e-41 | 18 |
CD8-positive, alpha-beta T cell | 1.69e-29 | 11 |
T cell | 1.66e-28 | 25 |
pro-T cell | 1.66e-28 | 25 |
lymphocyte | 8.34e-21 | 53 |
common lymphoid progenitor | 8.34e-21 | 53 |
lymphoid lineage restricted progenitor cell | 1.80e-19 | 52 |
nongranular leukocyte | 2.80e-19 | 115 |
leukocyte | 5.04e-17 | 136 |
CD4-positive, alpha-beta T cell | 2.51e-16 | 6 |
hematopoietic lineage restricted progenitor cell | 2.34e-13 | 120 |
hematopoietic stem cell | 5.67e-12 | 168 |
hematopoietic cell | 6.77e-11 | 177 |
hematopoietic oligopotent progenitor cell | 3.51e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.51e-10 | 161 |
naive T cell | 3.36e-09 | 3 |
single nucleate cell | 1.04e-08 | 3 |
mononuclear cell | 1.04e-08 | 3 |
natural killer cell | 3.16e-08 | 3 |
pro-NK cell | 3.16e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 3.90e-24 | 15 |
haemolymphatic fluid | 3.90e-24 | 15 |
organism substance | 3.90e-24 | 15 |
hemolymphoid system | 5.73e-12 | 108 |
hematopoietic system | 1.37e-11 | 98 |
blood island | 1.37e-11 | 98 |
hemopoietic organ | 7.04e-09 | 7 |
immune organ | 7.04e-09 | 7 |