FFCP PHASE1:Hg19::chr10:119806435..119806460,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22841 | |EntrezGene=22841 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29152 | |HGNC=29152 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L804,Q3I768 | |UniProt=Q7L804,Q3I768 | ||
|association_with_transcript=-321bp_to_ENST00000355624,NM_014904,uc001ldj.1,uc009xyz.1_5end | |||
|cluster_id=chr10:119806435..119806460,- | |||
|description=CAGE_peak_2_at_RAB11FIP2_5end | |||
|id=chr10:119806435..119806460,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.47e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.41e-23!94;UBERON:0001016!3.41e-23!94;UBERON:0005743!8.02e-21!86;UBERON:0001017!1.38e-19!82;UBERON:0002346!3.61e-18!90;UBERON:0001049!5.34e-18!57;UBERON:0005068!5.34e-18!57;UBERON:0006241!5.34e-18!57;UBERON:0007135!5.34e-18!57;UBERON:0003075!1.13e-16!86;UBERON:0007284!1.13e-16!86;UBERON:0002780!4.26e-16!41;UBERON:0001890!4.26e-16!41;UBERON:0006240!4.26e-16!41;UBERON:0000924!1.20e-15!173;UBERON:0006601!1.20e-15!173;UBERON:0000955!1.83e-15!69;UBERON:0006238!1.83e-15!69;UBERON:0002616!3.11e-15!59;UBERON:0003080!6.52e-15!42;UBERON:0004121!2.12e-14!169;UBERON:0007023!2.76e-13!115;UBERON:0001893!3.71e-13!34;UBERON:0003056!6.47e-13!61;UBERON:0002020!6.59e-13!34;UBERON:0003528!6.59e-13!34;UBERON:0002791!1.42e-12!33;UBERON:0001869!1.92e-12!32;UBERON:0000153!5.28e-12!129;UBERON:0007811!5.28e-12!129;UBERON:0000033!7.15e-12!123;UBERON:0002619!9.30e-10!22;UBERON:0000956!1.02e-09!25;UBERON:0000203!1.02e-09!25;UBERON:0001950!1.25e-09!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.27e-12;34!UBERON:0000073;1.69e-12;53!UBERON:0002616;1.69e-12;53!UBERON:0002780;2.24e-12;41!UBERON:0001890;2.24e-12;41!UBERON:0003528;2.84e-12;34!UBERON:0002020;2.84e-12;34!UBERON:0001869;3.54e-12;32!UBERON:0002791;8.67e-12;32!UBERON:0000956;1.50e-10;25!UBERON:0000203;1.50e-10;25!UBERON:0002619;1.63e-10;22!UBERON:0001950;2.01e-10;20!UBERON:0001016;1.92e-09;83!UBERON:0001017;5.89e-09;75!UBERON:0000955;1.45e-08;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.68e-23,89;UBERON:0001017,5.79e-21,81;UBERON:0001049,1.41e-19,56;UBERON:0005068,1.41e-19,56;UBERON:0006241,1.41e-19,56;UBERON:0007135,1.41e-19,56;UBERON:0000073,1.50e-18,53;UBERON:0002616,1.50e-18,53;UBERON:0002346,1.74e-18,86;UBERON:0003075,5.92e-17,82;UBERON:0007284,5.92e-17,82;UBERON:0000955,1.03e-16,68;UBERON:0006238,1.03e-16,68;UBERON:0002780,1.49e-16,41;UBERON:0001890,1.49e-16,41;UBERON:0003080,1.49e-16,41;UBERON:0006240,1.49e-16,41;UBERON:0004121,2.13e-15,171;UBERON:0000924,2.13e-15,171;UBERON:0006601,2.13e-15,171;UBERON:0003056,9.17e-15,61;UBERON:0001893,1.48e-13,34;UBERON:0003528,2.67e-13,34;UBERON:0002020,2.67e-13,34;UBERON:0007023,4.14e-13,114;UBERON:0001869,7.90e-13,32;UBERON:0002791,1.78e-12,32;UBERON:0010371,1.90e-12,104;UBERON:0010314,5.31e-11,132;UBERON:0002619,4.21e-10,22;UBERON:0000956,4.78e-10,25;UBERON:0000203,4.78e-10,25;UBERON:0001950,5.61e-10,20 | |||
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| ||
|short_description=p2@RAB11FIP2 | |||
}} | }} |
Latest revision as of 16:12, 16 September 2015
Short description: | p2@RAB11FIP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAB11FIP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -321bp_to_ENST00000355624, NM_014904, uc001ldj.1, uc009xyz.1_5end |
EntrezGene: | RAB11FIP2 |
HGNC: | 29152 |
UniProt: | Q7L804Q3I768 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.68e-23 | 89 |
central nervous system | 5.79e-21 | 81 |
neural tube | 1.41e-19 | 56 |
neural rod | 1.41e-19 | 56 |
future spinal cord | 1.41e-19 | 56 |
neural keel | 1.41e-19 | 56 |
regional part of nervous system | 1.50e-18 | 53 |
regional part of brain | 1.50e-18 | 53 |
neurectoderm | 1.74e-18 | 86 |
neural plate | 5.92e-17 | 82 |
presumptive neural plate | 5.92e-17 | 82 |
brain | 1.03e-16 | 68 |
future brain | 1.03e-16 | 68 |
regional part of forebrain | 1.49e-16 | 41 |
forebrain | 1.49e-16 | 41 |
anterior neural tube | 1.49e-16 | 41 |
future forebrain | 1.49e-16 | 41 |
ectoderm-derived structure | 2.13e-15 | 171 |
ectoderm | 2.13e-15 | 171 |
presumptive ectoderm | 2.13e-15 | 171 |
pre-chordal neural plate | 9.17e-15 | 61 |
telencephalon | 1.48e-13 | 34 |
brain grey matter | 2.67e-13 | 34 |
gray matter | 2.67e-13 | 34 |
adult organism | 4.14e-13 | 114 |
cerebral hemisphere | 7.90e-13 | 32 |
regional part of telencephalon | 1.78e-12 | 32 |
ecto-epithelium | 1.90e-12 | 104 |
structure with developmental contribution from neural crest | 5.31e-11 | 132 |
regional part of cerebral cortex | 4.21e-10 | 22 |
cerebral cortex | 4.78e-10 | 25 |
pallium | 4.78e-10 | 25 |
neocortex | 5.61e-10 | 20 |