FFCP PHASE1:Hg19::chr2:109237851..109237860,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=144bp_to_ENST00000449684_5end | |association_with_transcript=144bp_to_ENST00000449684_5end | ||
|cluster_id=chr2:109237851..109237860,+ | |||
|coexpression_cluster_id=C854 | |||
|description=CAGE_peak_24_at_LIMS1_5end | |description=CAGE_peak_24_at_LIMS1_5end | ||
|id=chr2:109237851..109237860,+ | |id=chr2:109237851..109237860,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.90e-21!18;CL:0000789!1.90e-21!18;CL:0002420!1.90e-21!18;CL:0002419!1.90e-21!18;CL:0000790!1.90e-21!18;CL:0000084!5.62e-20!25;CL:0000827!5.62e-20!25;CL:0000838!2.21e-19!52;CL:0000542!7.46e-19!53;CL:0000051!7.46e-19!53;CL:0000625!3.76e-13!11;CL:0002087!1.64e-10!119;CL:0002031!8.92e-10!124;CL:0000738!6.41e-09!140;CL:0000624!1.08e-08!6 | |ontology_enrichment_celltype=CL:0000791!1.90e-21!18;CL:0000789!1.90e-21!18;CL:0002420!1.90e-21!18;CL:0002419!1.90e-21!18;CL:0000790!1.90e-21!18;CL:0000084!5.62e-20!25;CL:0000827!5.62e-20!25;CL:0000838!2.21e-19!52;CL:0000542!7.46e-19!53;CL:0000051!7.46e-19!53;CL:0000625!3.76e-13!11;CL:0002087!1.64e-10!119;CL:0002031!8.92e-10!124;CL:0000738!6.41e-09!140;CL:0000624!1.08e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;4.57e-32;18!CL:0000789;4.57e-32;18!CL:0002419;4.57e-32;18!CL:0000084;1.01e-22;25!CL:0000624;1.69e-20;6!CL:0000625;1.47e-16;11!CL:0000898;3.11e-11;3!CL:0002553;3.44e-09;1!CL:0000895;4.02e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.22e-32,18;CL:0000789,5.22e-32,18;CL:0002420,5.22e-32,18;CL:0002419,5.22e-32,18;CL:0000790,5.22e-32,18;CL:0000084,1.11e-22,25;CL:0000827,1.11e-22,25;CL:0000624,1.32e-20,6;CL:0000625,1.95e-16,11;CL:0000898,3.62e-11,3;CL:0000838,3.35e-10,52;CL:0000542,5.54e-10,53;CL:0000051,5.54e-10,53;CL:0002553,3.31e-09,1;CL:0000810,4.19e-09,1;CL:0000895,4.19e-09,1;CL:0002436,4.19e-09,1;CL:0002427,4.19e-09,1;CL:0002428,4.19e-09,1;CL:0002429,4.19e-09,1;CL:0002433,4.19e-09,1;CL:0002431,4.19e-09,1;CL:0002432,4.19e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000790;4.57e-32;18!CL:0002427;4.02e-09;1!UBERON:0005754;1.27e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!6.22e-09!7;UBERON:0000178!9.76e-09!15;UBERON:0000179!9.76e-09!15;UBERON:0000463!9.76e-09!15;UBERON:0002370!3.37e-08!4;UBERON:0005058!3.37e-08!4;UBERON:0009113!3.37e-08!4;UBERON:0003295!3.37e-08!4;UBERON:0005562!3.37e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.54e-15;2!UBERON:0005058;1.54e-15;2!UBERON:0009113;1.54e-15;2!UBERON:0000998;1.27e-08;1!UBERON:0006868;1.27e-08;1!UBERON:0004177;9.72e-07;5!UBERON:0005057;9.72e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.84e-17,4;UBERON:0005058,1.84e-17,4;UBERON:0009113,1.84e-17,4;UBERON:0003295,1.84e-17,4;UBERON:0005562,1.84e-17,4;UBERON:0003351,7.91e-12,6;UBERON:0004177,3.28e-10,7;UBERON:0005057,3.28e-10,7;UBERON:0000998,1.32e-08,1;UBERON:0006868,1.32e-08,1;UBERON:0000974,2.75e-07,10;UBERON:0003408,2.75e-07,10;UBERON:0001042,2.75e-07,10;UBERON:0009145,2.75e-07,10 | |||
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| ||
|short_description=p24@LIMS1 | |short_description=p24@LIMS1 | ||
}} | }} |
Latest revision as of 06:37, 16 September 2015
Short description: | p24@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_LIMS1_5end |
Coexpression cluster: | C854_argyrophil_CD4_anaplastic_smallcell_nonsmall_seminal_CD8 |
Association with transcript: | 144bp_to_ENST00000449684_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.22e-32 | 18 |
alpha-beta T cell | 5.22e-32 | 18 |
immature T cell | 5.22e-32 | 18 |
mature T cell | 5.22e-32 | 18 |
immature alpha-beta T cell | 5.22e-32 | 18 |
T cell | 1.11e-22 | 25 |
pro-T cell | 1.11e-22 | 25 |
CD4-positive, alpha-beta T cell | 1.32e-20 | 6 |
CD8-positive, alpha-beta T cell | 1.95e-16 | 11 |
naive T cell | 3.62e-11 | 3 |
lymphoid lineage restricted progenitor cell | 3.35e-10 | 52 |
lymphocyte | 5.54e-10 | 53 |
common lymphoid progenitor | 5.54e-10 | 53 |
lung fibroblast | 3.31e-09 | 1 |
CD4-positive, alpha-beta thymocyte | 4.19e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.19e-09 | 1 |
mature CD4 single-positive thymocyte | 4.19e-09 | 1 |
resting double-positive thymocyte | 4.19e-09 | 1 |
double-positive blast | 4.19e-09 | 1 |
CD69-positive double-positive thymocyte | 4.19e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 4.19e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.19e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 4.19e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.84e-17 | 4 |
hemolymphoid system gland | 1.84e-17 | 4 |
thymic region | 1.84e-17 | 4 |
pharyngeal gland | 1.84e-17 | 4 |
thymus primordium | 1.84e-17 | 4 |
pharyngeal epithelium | 7.91e-12 | 6 |
hemopoietic organ | 3.28e-10 | 7 |
immune organ | 3.28e-10 | 7 |
seminal vesicle | 1.32e-08 | 1 |
seminal fluid secreting gland | 1.32e-08 | 1 |
neck | 2.75e-07 | 10 |
gland of gut | 2.75e-07 | 10 |
chordate pharynx | 2.75e-07 | 10 |
pharyngeal region of foregut | 2.75e-07 | 10 |