FFCP PHASE1:Hg19::chr12:58146128..58146169,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:58146128..58146169,-
|short_description=p2@CDK4
|description=CAGE_peak_2_at_CDK4_5end
|association_with_transcript=0bp_to_ENST00000549606,ENST00000551706,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1019 | |EntrezGene=1019 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1773 | |HGNC=1773 | ||
|TSSclassifier=strong | |||
|UniProt=F8VZ13,F8VXD2 | |UniProt=F8VZ13,F8VXD2 | ||
|association_with_transcript=0bp_to_ENST00000549606,ENST00000551706,ENST00000551800,uc001spv.2,uc001spw.2,uc010ssb.1_5end | |||
|cluster_id=chr12:58146128..58146169,- | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_2_at_CDK4_5end | |||
|id=chr12:58146128..58146169,- | |||
|ontology_enrichment_celltype=CL:0000548!2.21e-38!679;CL:0000004!2.21e-38!679;CL:0000255!2.21e-38!679;CL:0000012!3.97e-38!682;CL:0000220!1.68e-26!246;CL:0002321!4.38e-26!248;CL:0000003!3.14e-25!722;CL:0000144!6.05e-25!625;CL:0000055!1.45e-20!180;CL:0002371!1.98e-20!591;CL:0000222!6.27e-20!119;CL:0000066!7.77e-19!254;CL:0000183!2.77e-13!59;CL:0000063!1.73e-12!578;CL:0000393!2.55e-11!60;CL:0000211!2.55e-11!60;CL:0000680!2.88e-11!57;CL:0000056!2.88e-11!57;CL:0000355!2.88e-11!57;CL:0000187!5.55e-11!54;CL:0000192!2.33e-09!42;CL:0000514!2.33e-09!42;CL:0000213!1.41e-08!57;CL:0000215!1.41e-08!57;CL:0000076!3.34e-07!62;CL:0000359!4.38e-07!32;CL:0000057!4.39e-07!75;CL:0002078!6.93e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.58e-07;15!CL:0000359;9.62e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.42e-26,250;CL:0000222,4.22e-20,121;CL:0000066,4.96e-19,253;CL:0000393,5.71e-11,61;CL:0000211,5.71e-11,61;CL:0000680,6.64e-11,58;CL:0000056,6.64e-11,58;CL:0000355,6.64e-11,58;CL:0000187,1.30e-10,55;CL:0000213,5.07e-09,58;CL:0000215,5.07e-09,58;CL:0000192,5.66e-09,43;CL:0000514,5.66e-09,43;CL:0002078,2.52e-07,45;CL:1000449,3.40e-07,15;CL:0000076,4.25e-07,63;CL:0000359,4.38e-07,32;CL:0000057,8.46e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!6.37e-14!239;DOID:162!2.22e-12!235;DOID:0050687!2.61e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,6.37e-14,239;DOID:162,2.22e-12,235;DOID:0050687,2.61e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.48e-13!238;UBERON:0009142!4.48e-13!238;UBERON:0000486!1.28e-11!82;UBERON:0004290!4.16e-11!70;UBERON:0002100!5.97e-11!216;UBERON:0003914!2.75e-10!118;UBERON:0002049!3.70e-10!79;UBERON:0007798!3.70e-10!79;UBERON:0000914!9.77e-10!83;UBERON:0002329!9.77e-10!83;UBERON:0003077!9.77e-10!83;UBERON:0003059!9.77e-10!83;UBERON:0007282!9.77e-10!83;UBERON:0009618!9.77e-10!83;UBERON:0007285!9.77e-10!83;UBERON:0005256!1.03e-09!143;UBERON:0000490!2.25e-09!138;UBERON:0001134!4.72e-09!61;UBERON:0002036!4.72e-09!61;UBERON:0003082!4.72e-09!61;UBERON:0000055!8.22e-09!69;UBERON:0004872!2.11e-08!84;UBERON:0001981!2.29e-08!60;UBERON:0007500!2.29e-08!60;UBERON:0004537!2.29e-08!60;UBERON:0006965!2.29e-08!60;UBERON:0001637!2.93e-08!42;UBERON:0003509!2.93e-08!42;UBERON:0004572!2.93e-08!42;UBERON:0002385!5.42e-08!63;UBERON:0001015!5.42e-08!63;UBERON:0000383!5.42e-08!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.58e-07;15!UBERON:0004819;3.58e-07;15!UBERON:0001285;3.58e-07;15!UBERON:0007684;3.58e-07;15!UBERON:0003914;3.75e-07;74!UBERON:0000353;4.24e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.12e-13,78;UBERON:0002100,1.26e-12,199;UBERON:0000486,2.48e-11,83;UBERON:0000490,5.47e-11,148;UBERON:0002329,8.49e-11,71;UBERON:0003059,8.49e-11,71;UBERON:0007282,8.49e-11,71;UBERON:0004290,8.49e-11,71;UBERON:0009618,8.49e-11,71;UBERON:0002049,1.56e-10,78;UBERON:0007798,1.56e-10,78;UBERON:0003914,1.69e-10,117;UBERON:0003077,3.56e-10,72;UBERON:0007285,3.56e-10,72;UBERON:0007524,6.15e-10,73;UBERON:0003104,1.70e-09,160;UBERON:0009142,1.70e-09,160;UBERON:0000055,3.52e-09,68;UBERON:0001134,9.18e-09,62;UBERON:0002036,9.18e-09,62;UBERON:0003082,9.18e-09,62;UBERON:0007500,9.40e-09,59;UBERON:0001981,9.40e-09,59;UBERON:0004537,9.40e-09,59;UBERON:0006965,9.40e-09,59;UBERON:0004872,1.03e-08,83;UBERON:0005256,1.45e-08,122;UBERON:0001637,2.93e-08,42;UBERON:0003509,2.93e-08,42;UBERON:0004572,2.93e-08,42;UBERON:0002385,9.77e-08,64;UBERON:0001015,9.77e-08,64;UBERON:0000383,9.77e-08,64;UBERON:0004211,3.40e-07,15;UBERON:0009773,3.40e-07,15;UBERON:0001231,3.40e-07,15;UBERON:0001285,3.40e-07,15;UBERON:0007684,3.40e-07,15;UBERON:0004208,3.40e-07,15;UBERON:0000353,4.28e-07,15 | |||
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| ||
|short_description=p2@CDK4 | |||
}} | }} |
Latest revision as of 16:34, 19 September 2015
Short description: | p2@CDK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CDK4_5end |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | 0bp_to_ENST00000549606, ENST00000551706, ENST00000551800, uc001spv.2, uc001spw.2, uc010ssb.1_5end |
EntrezGene: | CDK4 |
HGNC: | 1773 |
UniProt: | F8VZ13F8VXD2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.42e-26 | 250 |
mesodermal cell | 4.22e-20 | 121 |
epithelial cell | 4.96e-19 | 253 |
electrically responsive cell | 5.71e-11 | 61 |
electrically active cell | 5.71e-11 | 61 |
muscle precursor cell | 6.64e-11 | 58 |
myoblast | 6.64e-11 | 58 |
multi-potent skeletal muscle stem cell | 6.64e-11 | 58 |
muscle cell | 1.30e-10 | 55 |
lining cell | 5.07e-09 | 58 |
barrier cell | 5.07e-09 | 58 |
smooth muscle cell | 5.66e-09 | 43 |
smooth muscle myoblast | 5.66e-09 | 43 |
meso-epithelial cell | 2.52e-07 | 45 |
epithelial cell of nephron | 3.40e-07 | 15 |
squamous epithelial cell | 4.25e-07 | 63 |
vascular associated smooth muscle cell | 4.38e-07 | 32 |
fibroblast | 8.46e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 6.37e-14 | 239 |
cancer | 2.22e-12 | 235 |
cell type cancer | 2.61e-07 | 143 |