FFCP PHASE1:Hg19::chr1:25889292..25889305,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26119 | |EntrezGene=26119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18640 | |HGNC=18640 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc009vrx.2_5end | |association_with_transcript=0bp_to_uc009vrx.2_5end | ||
|cluster_id=chr1:25889292..25889305,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_LDLRAP1_5end | |description=CAGE_peak_3_at_LDLRAP1_5end | ||
|id=chr1:25889292..25889305,+ | |id=chr1:25889292..25889305,+ | ||
|ontology_enrichment_celltype=CL:0000791!2.65e-31!18;CL:0000789!2.65e-31!18;CL:0002420!2.65e-31!18;CL:0002419!2.65e-31!18;CL:0000790!2.65e-31!18;CL:0000084!1.88e-23!25;CL:0000827!1.88e-23!25;CL:0000625!2.46e-22!11;CL:0000838!2.05e-17!52;CL:0000542!6.06e-17!53;CL:0000051!6.06e-17!53;CL:0002087!1.16e-14!119;CL:0000624!9.55e-13!6;CL:0000738!1.94e-12!140;CL:0002031!7.54e-11!124;CL:0000037!3.52e-08!172;CL:0000566!3.52e-08!172;CL:0000898!2.83e-07!3;CL:0000988!3.40e-07!182;CL:0002032!5.22e-07!165;CL:0000837!5.22e-07!165;CL:0000842!6.32e-07!3 | |ontology_enrichment_celltype=CL:0000791!2.65e-31!18;CL:0000789!2.65e-31!18;CL:0002420!2.65e-31!18;CL:0002419!2.65e-31!18;CL:0000790!2.65e-31!18;CL:0000084!1.88e-23!25;CL:0000827!1.88e-23!25;CL:0000625!2.46e-22!11;CL:0000838!2.05e-17!52;CL:0000542!6.06e-17!53;CL:0000051!6.06e-17!53;CL:0002087!1.16e-14!119;CL:0000624!9.55e-13!6;CL:0000738!1.94e-12!140;CL:0002031!7.54e-11!124;CL:0000037!3.52e-08!172;CL:0000566!3.52e-08!172;CL:0000898!2.83e-07!3;CL:0000988!3.40e-07!182;CL:0002032!5.22e-07!165;CL:0000837!5.22e-07!165;CL:0000842!6.32e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.44e-51;18!CL:0000789;1.44e-51;18!CL:0002419;1.44e-51;18!CL:0000625;3.19e-36;11!CL:0000084;7.56e-36;25!CL:0000624;3.55e-20;6!CL:0000898;4.57e-11;3!CL:0000542;1.02e-10;53!CL:0000226;1.79e-10;3!CL:0000842;1.79e-10;3!CL:0000623;5.12e-10;3!CL:0000815;5.86e-08;2!CL:0000792;5.86e-08;2!CL:0002677;5.86e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.75e-51,18;CL:0000789,1.75e-51,18;CL:0002420,1.75e-51,18;CL:0002419,1.75e-51,18;CL:0000790,1.75e-51,18;CL:0000625,3.72e-36,11;CL:0000084,8.66e-36,25;CL:0000827,8.66e-36,25;CL:0000838,5.64e-21,52;CL:0000542,1.76e-20,53;CL:0000051,1.76e-20,53;CL:0000624,3.73e-20,6;CL:0002087,1.48e-11,115;CL:0000898,4.57e-11,3;CL:0000226,1.73e-10,3;CL:0000842,1.73e-10,3;CL:0000623,6.10e-10,3;CL:0000825,6.10e-10,3;CL:0000738,7.18e-09,136;CL:0000815,5.86e-08,2;CL:0000792,5.86e-08,2;CL:0002677,5.86e-08,2;CL:0002031,7.41e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000790;1.44e-51;18!CL:0000051;1.02e-10;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.69e-18!15;UBERON:0000179!3.69e-18!15;UBERON:0000463!3.69e-18!15;UBERON:0007023!1.87e-08!115;UBERON:0002193!5.55e-08!112;UBERON:0002390!7.20e-08!102;UBERON:0003061!7.20e-08!102;UBERON:0004177!8.84e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.54e-30;15!UBERON:0000179;5.54e-30;15!UBERON:0000463;5.54e-30;15!UBERON:0002390;4.81e-18;32!UBERON:0002193;1.12e-12;42!UBERON:0002370;6.63e-07;2!UBERON:0005058;6.63e-07;2!UBERON:0009113;6.63e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.40e-30,15;UBERON:0000179,5.40e-30,15;UBERON:0000463,5.40e-30,15;UBERON:0002370,1.45e-07,4;UBERON:0005058,1.45e-07,4;UBERON:0009113,1.45e-07,4;UBERON:0003295,1.45e-07,4;UBERON:0005562,1.45e-07,4;UBERON:0004177,3.26e-07,7;UBERON:0005057,3.26e-07,7;UBERON:0002193,5.01e-07,108 | |||
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| ||
|short_description=p3@LDLRAP1 | |short_description=p3@LDLRAP1 | ||
}} | }} |
Latest revision as of 03:35, 17 September 2015
Short description: | p3@LDLRAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LDLRAP1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_uc009vrx.2_5end |
EntrezGene: | LDLRAP1 |
HGNC: | 18640 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.75e-51 | 18 |
alpha-beta T cell | 1.75e-51 | 18 |
immature T cell | 1.75e-51 | 18 |
mature T cell | 1.75e-51 | 18 |
immature alpha-beta T cell | 1.75e-51 | 18 |
CD8-positive, alpha-beta T cell | 3.72e-36 | 11 |
T cell | 8.66e-36 | 25 |
pro-T cell | 8.66e-36 | 25 |
lymphoid lineage restricted progenitor cell | 5.64e-21 | 52 |
lymphocyte | 1.76e-20 | 53 |
common lymphoid progenitor | 1.76e-20 | 53 |
CD4-positive, alpha-beta T cell | 3.73e-20 | 6 |
nongranular leukocyte | 1.48e-11 | 115 |
naive T cell | 4.57e-11 | 3 |
single nucleate cell | 1.73e-10 | 3 |
mononuclear cell | 1.73e-10 | 3 |
natural killer cell | 6.10e-10 | 3 |
pro-NK cell | 6.10e-10 | 3 |
leukocyte | 7.18e-09 | 136 |
regulatory T cell | 5.86e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.86e-08 | 2 |
naive regulatory T cell | 5.86e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 7.41e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 5.40e-30 | 15 |
haemolymphatic fluid | 5.40e-30 | 15 |
organism substance | 5.40e-30 | 15 |
thymus | 1.45e-07 | 4 |
hemolymphoid system gland | 1.45e-07 | 4 |
thymic region | 1.45e-07 | 4 |
pharyngeal gland | 1.45e-07 | 4 |
thymus primordium | 1.45e-07 | 4 |
hemopoietic organ | 3.26e-07 | 7 |
immune organ | 3.26e-07 | 7 |
hemolymphoid system | 5.01e-07 | 108 |