FFCP PHASE1:Hg19::chr5:179247896..179247913,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8878 | |EntrezGene=8878 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11280 | |HGNC=11280 | ||
|TSSclassifier=strong | |||
|UniProt=C9J6J8,E7ERP8,E3W990 | |UniProt=C9J6J8,E7ERP8,E3W990 | ||
|association_with_transcript=0bp_to_ENST00000453046,ENST00000454378,ENST00000504627_5end | |association_with_transcript=0bp_to_ENST00000453046,ENST00000454378,ENST00000504627_5end | ||
|cluster_id=chr5:179247896..179247913,+ | |||
|coexpression_cluster_id=C1276 | |||
|description=CAGE_peak_1_at_SQSTM1_5end | |description=CAGE_peak_1_at_SQSTM1_5end | ||
|id=chr5:179247896..179247913,+ | |id=chr5:179247896..179247913,+ | ||
|ontology_enrichment_celltype=CL:0000222!2.25e-15!119;CL:0000548!1.60e-13!679;CL:0000004!1.60e-13!679;CL:0000255!1.60e-13!679;CL:0000012!1.67e-13!682;CL:0000766!8.76e-11!76;CL:0000557!1.06e-10!71;CL:0002057!1.14e-10!42;CL:0000144!1.36e-10!625;CL:0002009!3.88e-10!65;CL:0000860!5.47e-10!45;CL:0000839!5.54e-10!70;CL:0000213!6.09e-10!57;CL:0000215!6.09e-10!57;CL:0002194!8.52e-10!63;CL:0000576!8.52e-10!63;CL:0000040!8.52e-10!63;CL:0000559!8.52e-10!63;CL:0002371!2.85e-09!591;CL:0000220!3.14e-09!246;CL:0002321!6.85e-09!248;CL:0000063!1.87e-08!578;CL:0000192!2.18e-08!42;CL:0000514!2.18e-08!42;CL:0000077!5.43e-08!19;CL:0000003!8.75e-07!722;CL:0000183!8.77e-07!59;CL:0000066!9.10e-07!254 | |ontology_enrichment_celltype=CL:0000222!2.25e-15!119;CL:0000548!1.60e-13!679;CL:0000004!1.60e-13!679;CL:0000255!1.60e-13!679;CL:0000012!1.67e-13!682;CL:0000766!8.76e-11!76;CL:0000557!1.06e-10!71;CL:0002057!1.14e-10!42;CL:0000144!1.36e-10!625;CL:0002009!3.88e-10!65;CL:0000860!5.47e-10!45;CL:0000839!5.54e-10!70;CL:0000213!6.09e-10!57;CL:0000215!6.09e-10!57;CL:0002194!8.52e-10!63;CL:0000576!8.52e-10!63;CL:0000040!8.52e-10!63;CL:0000559!8.52e-10!63;CL:0002371!2.85e-09!591;CL:0000220!3.14e-09!246;CL:0002321!6.85e-09!248;CL:0000063!1.87e-08!578;CL:0000192!2.18e-08!42;CL:0000514!2.18e-08!42;CL:0000077!5.43e-08!19;CL:0000003!8.75e-07!722;CL:0000183!8.77e-07!59;CL:0000066!9.10e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.63e-14;33!CL:0002057;1.63e-14;33!CL:0000473;1.46e-13;39!CL:0000234;1.46e-13;39!CL:0000077;5.40e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,7.21e-16,121;CL:0000473,1.37e-12,48;CL:0000234,1.37e-12,48;CL:0000766,2.29e-11,72;CL:0000557,2.55e-11,67;CL:0002009,8.88e-11,61;CL:0000860,1.14e-10,42;CL:0002057,1.14e-10,42;CL:0000839,1.44e-10,66;CL:0002194,1.96e-10,59;CL:0000576,1.96e-10,59;CL:0000040,1.96e-10,59;CL:0000559,1.96e-10,59;CL:0000213,2.82e-10,58;CL:0000215,2.82e-10,58;CL:0002321,3.07e-09,250;CL:0000192,1.58e-08,43;CL:0000514,1.58e-08,43;CL:0000077,5.43e-08,19 | |||
|ontology_enrichment_development_v019=CL:0002057;1.84e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!3.07e-21!448;UBERON:0004120!3.07e-21!448;UBERON:0006603!3.07e-21!448;UBERON:0003081!2.63e-14!216;UBERON:0002204!2.55e-13!167;UBERON:0002371!1.74e-10!80;UBERON:0002405!4.08e-10!115;UBERON:0003914!4.28e-09!118;UBERON:0000055!4.42e-09!69;UBERON:0001474!1.44e-08!86;UBERON:0000468!1.72e-08!659;UBERON:0000480!1.74e-08!626;UBERON:0000467!1.92e-08!625;UBERON:0002049!2.77e-08!79;UBERON:0007798!2.77e-08!79;UBERON:0002100!3.21e-08!216;UBERON:0001637!4.80e-08!42;UBERON:0003509!4.80e-08!42;UBERON:0004572!4.80e-08!42;UBERON:0004765!8.32e-08!101;UBERON:0001434!8.32e-08!101;UBERON:0005256!1.42e-07!143;UBERON:0004573!1.47e-07!33;UBERON:0004571!1.47e-07!33;UBERON:0004872!1.75e-07!84;UBERON:0001981!5.90e-07!60;UBERON:0007500!5.90e-07!60;UBERON:0004537!5.90e-07!60;UBERON:0006965!5.90e-07!60;UBERON:0001009!6.65e-07!113;UBERON:0000923!6.72e-07!604;UBERON:0005291!6.72e-07!604;UBERON:0006598!6.72e-07!604;UBERON:0002532!6.72e-07!604;UBERON:0002050!9.97e-07!605;UBERON:0005423!9.97e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.11e-07;33!UBERON:0004571;9.11e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.24e-18,315;UBERON:0004120,1.24e-18,315;UBERON:0006603,1.24e-18,315;UBERON:0002204,1.66e-14,167;UBERON:0003081,5.84e-14,203;UBERON:0002371,5.04e-11,76;UBERON:0004765,3.24e-10,90;UBERON:0002405,4.55e-10,93;UBERON:0000055,3.25e-09,68;UBERON:0001474,5.64e-09,82;UBERON:0003914,5.86e-09,117;UBERON:0002100,7.19e-09,199;UBERON:0001434,9.29e-09,100;UBERON:0002049,2.17e-08,78;UBERON:0007798,2.17e-08,78;UBERON:0001637,4.80e-08,42;UBERON:0003509,4.80e-08,42;UBERON:0004572,4.80e-08,42;UBERON:0005256,1.08e-07,122;UBERON:0004872,1.42e-07,83;UBERON:0004573,1.47e-07,33;UBERON:0004571,1.47e-07,33;UBERON:0007500,4.54e-07,59;UBERON:0001981,4.54e-07,59;UBERON:0004537,4.54e-07,59;UBERON:0006965,4.54e-07,59;UBERON:0003104,5.25e-07,160;UBERON:0009142,5.25e-07,160;UBERON:0001009,5.76e-07,112;UBERON:0002193,8.35e-07,108;UBERON:0007503,8.55e-07,78 | |||
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| ||
|short_description=p1@SQSTM1 | |short_description=p1@SQSTM1 | ||
}} | }} |
Latest revision as of 09:47, 17 September 2015
Short description: | p1@SQSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SQSTM1_5end |
Coexpression cluster: | C1276_mesothelioma_CD14_leiomyoma_bile_Mesothelial_migratory_mesenchymal |
Association with transcript: | 0bp_to_ENST00000453046, ENST00000454378, ENST00000504627_5end |
EntrezGene: | SQSTM1 |
HGNC: | 11280 |
UniProt: | C9J6J8E7ERP8E3W990 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 7.21e-16 | 121 |
defensive cell | 1.37e-12 | 48 |
phagocyte | 1.37e-12 | 48 |
myeloid leukocyte | 2.29e-11 | 72 |
granulocyte monocyte progenitor cell | 2.55e-11 | 67 |
macrophage dendritic cell progenitor | 8.88e-11 | 61 |
classical monocyte | 1.14e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-10 | 42 |
myeloid lineage restricted progenitor cell | 1.44e-10 | 66 |
monopoietic cell | 1.96e-10 | 59 |
monocyte | 1.96e-10 | 59 |
monoblast | 1.96e-10 | 59 |
promonocyte | 1.96e-10 | 59 |
lining cell | 2.82e-10 | 58 |
barrier cell | 2.82e-10 | 58 |
embryonic cell | 3.07e-09 | 250 |
smooth muscle cell | 1.58e-08 | 43 |
smooth muscle myoblast | 1.58e-08 | 43 |
mesothelial cell | 5.43e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.24e-18 | 315 |
mesoderm-derived structure | 1.24e-18 | 315 |
presumptive mesoderm | 1.24e-18 | 315 |
musculoskeletal system | 1.66e-14 | 167 |
lateral plate mesoderm | 5.84e-14 | 203 |
bone marrow | 5.04e-11 | 76 |
skeletal element | 3.24e-10 | 90 |
immune system | 4.55e-10 | 93 |
vessel | 3.25e-09 | 68 |
bone element | 5.64e-09 | 82 |
epithelial tube | 5.86e-09 | 117 |
trunk | 7.19e-09 | 199 |
skeletal system | 9.29e-09 | 100 |
vasculature | 2.17e-08 | 78 |
vascular system | 2.17e-08 | 78 |
artery | 4.80e-08 | 42 |
arterial blood vessel | 4.80e-08 | 42 |
arterial system | 4.80e-08 | 42 |
trunk mesenchyme | 1.08e-07 | 122 |
splanchnic layer of lateral plate mesoderm | 1.42e-07 | 83 |
systemic artery | 1.47e-07 | 33 |
systemic arterial system | 1.47e-07 | 33 |
epithelial tube open at both ends | 4.54e-07 | 59 |
blood vessel | 4.54e-07 | 59 |
blood vasculature | 4.54e-07 | 59 |
vascular cord | 4.54e-07 | 59 |
mesenchyme | 5.25e-07 | 160 |
entire embryonic mesenchyme | 5.25e-07 | 160 |
circulatory system | 5.76e-07 | 112 |
hemolymphoid system | 8.35e-07 | 108 |
epithelial vesicle | 8.55e-07 | 78 |