FFCP PHASE1:Hg19::chr7:19157248..19157268,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7291 | |EntrezGene=7291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12428 | |HGNC=12428 | ||
|TSSclassifier=strong | |||
|UniProt=Q15672 | |UniProt=Q15672 | ||
|association_with_transcript=26bp_to_ENST00000242261,NM_000474,uc003sum.2_5end | |association_with_transcript=26bp_to_ENST00000242261,NM_000474,uc003sum.2_5end | ||
|cluster_id=chr7:19157248..19157268,- | |||
|description=CAGE_peak_1_at_TWIST1_5end | |description=CAGE_peak_1_at_TWIST1_5end | ||
|id=chr7:19157248..19157268,- | |id=chr7:19157248..19157268,- | ||
|ontology_enrichment_celltype=CL:0000055!1.72e-43!180;CL:0000057!9.03e-26!75;CL:0002620!1.28e-13!23;CL:0000680!2.76e-12!57;CL:0000056!2.76e-12!57;CL:0000355!2.76e-12!57;CL:0000187!5.34e-11!54;CL:0000183!6.21e-11!59;CL:0000393!4.16e-09!60;CL:0000211!4.16e-09!60;CL:0000499!1.99e-08!27;CL:0000136!2.39e-07!15;CL:0000192!4.24e-07!42;CL:0000514!4.24e-07!42;CL:0000327!7.53e-07!14;CL:0000333!7.61e-07!41 | |ontology_enrichment_celltype=CL:0000055!1.72e-43!180;CL:0000057!9.03e-26!75;CL:0002620!1.28e-13!23;CL:0000680!2.76e-12!57;CL:0000056!2.76e-12!57;CL:0000355!2.76e-12!57;CL:0000187!5.34e-11!54;CL:0000183!6.21e-11!59;CL:0000393!4.16e-09!60;CL:0000211!4.16e-09!60;CL:0000499!1.99e-08!27;CL:0000136!2.39e-07!15;CL:0000192!4.24e-07!42;CL:0000514!4.24e-07!42;CL:0000327!7.53e-07!14;CL:0000333!7.61e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.87e-14;23!CL:0000057;2.19e-11;73!CL:0002320;4.75e-09;188!CL:0000499;3.10e-08;28!CL:0000187;1.74e-07;55!CL:0000134;6.41e-07;55!CL:0000327;8.75e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.84e-27,76;CL:0002620,1.93e-14,23;CL:0000680,2.28e-13,58;CL:0000056,2.28e-13,58;CL:0000355,2.28e-13,58;CL:0000187,5.48e-12,55;CL:0000393,5.28e-10,61;CL:0000211,5.28e-10,61;CL:0000048,3.83e-09,427;CL:0000034,1.99e-08,441;CL:0000723,2.42e-08,433;CL:0000499,2.64e-08,28;CL:0000192,8.49e-08,43;CL:0000514,8.49e-08,43;CL:0000136,9.62e-08,15;CL:0000333,3.82e-07,41;CL:0000327,8.01e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;4.95e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.24e-18!83;UBERON:0002329!3.24e-18!83;UBERON:0003077!3.24e-18!83;UBERON:0003059!3.24e-18!83;UBERON:0007282!3.24e-18!83;UBERON:0009618!3.24e-18!83;UBERON:0007285!3.24e-18!83;UBERON:0004290!3.69e-16!70;UBERON:0003102!9.48e-15!95;UBERON:0000486!7.51e-14!82;UBERON:0002199!1.19e-13!45;UBERON:0002416!1.19e-13!45;UBERON:0001134!6.04e-12!61;UBERON:0002036!6.04e-12!61;UBERON:0003082!6.04e-12!61;UBERON:0002097!7.70e-12!40;UBERON:0002385!2.09e-11!63;UBERON:0001015!2.09e-11!63;UBERON:0000383!2.09e-11!63;UBERON:0000475!3.40e-09!365;UBERON:0005256!3.21e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;9.00e-10;41!UBERON:0002199;2.10e-09;46!UBERON:0002416;2.10e-09;46!UBERON:0002384;2.18e-09;198!UBERON:0003102;8.08e-09;50!UBERON:0002204;2.10e-07;70!UBERON:0001434;3.19e-07;36!UBERON:0001013;6.20e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.13e-18,73;UBERON:0002329,1.21e-17,71;UBERON:0003059,1.21e-17,71;UBERON:0007282,1.21e-17,71;UBERON:0004290,1.21e-17,71;UBERON:0009618,1.21e-17,71;UBERON:0003077,2.17e-17,72;UBERON:0007285,2.17e-17,72;UBERON:0000486,1.80e-15,83;UBERON:0002199,8.11e-15,46;UBERON:0002416,8.11e-15,46;UBERON:0007503,8.49e-15,78;UBERON:0003102,1.84e-13,99;UBERON:0001134,4.14e-13,62;UBERON:0002036,4.14e-13,62;UBERON:0003082,4.14e-13,62;UBERON:0002097,7.04e-13,41;UBERON:0002385,1.25e-12,64;UBERON:0001015,1.25e-12,64;UBERON:0000383,1.25e-12,64;UBERON:0005256,8.32e-09,122;UBERON:0003104,1.09e-08,160;UBERON:0009142,1.09e-08,160;UBERON:0001013,6.20e-07,14 | |||
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|phase1_expression=22.3464406502785,72.7941781229343,9.58489947852604,64.0469109460035,21.0071714380825,10.4680622892044,70.923965887127,30.9542737979147,118.578275202727,1.47440361900905,1.39560233594486,1.52908960491121,2.63766978228454,103.097372015719,85.1691255620744,9.41255205032485,9.64311244838363,8.03341099426111,5.85519358548608,108.346531107573,112.200380184339,115.037882782458,2.57612388417951,14.6455634827986,7.28147309649856,0,0,0,0,0,2.32224184974114,0.919421224478927,1.50602959389125,2.58827807116751,0,0,0,0.553995408531877,1.00272223735071,0.434021741431704,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,1.29096936716765,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0.217188844705117,7.87019353423379,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0.883817722424512,0.664601683750863,0,0.384273959177026,0.390178042679635,0.328875809207352,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,104.836952515004,45.6076584598473,10.4847300711695,191.201311611436,69.1846316677528,137.604193012783,3.9764297352555,38.4441547539082,2.55244006342983,4.43458794925128,5.35792192728069,1.63723844372141,0,0,0,0,0.132957960518865,0,0,0,1.39133685156694,11.1830497363796,1.04142150482278,5.08777147731609,0.419499436209906,0,3.13492449805216,0,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0.112611480483322,0,0,0.732806975721629,0,0,0,9.44246708221105,18.1081631680349,2.91300197789081,18.3575437279241,16.6694139633228,19.0630384048384,9.60740961567345,12.0867098724408,14.9381296991888,25.460317021171,20.5961997922958,15.1357427644931,23.62321290368,173.632180988843,21.5390453012921,47.3491611881893,71.5859179843127,141.391136367093,156.854883092719,162.220681741097,46.9554593886254,73.0864188005019,172.450728782353,59.4001428641027,110.775584316793,10.0117749813183,33.056434523547,49.6591536164495,74.9459934033065,30.4770527032601,142.667726786272,70.4921930337745,134.913776898124,20.6446573351238,170.24076426873,125.358187236499,96.6409469287602,123.337440490689,95.7357996625097,145.051624045689,86.9165719068524,133.3333024706,166.227530805005,217.597913398427,134.300802119115,177.487370387055,297.498038528923,184.275587658354,97.3277799862199,0,0.818238361772504,0,4.14710600840624,1.06023814657188,7.90118811512725,20.0065836179665,14.3822884999108,0.72995471815166,211.206868645252,260.512579968119,186.482143825849,107.268991375387,85.1817788370111,0.354920400119532,0.674338760312407,0.241011029883482,0.882351781859152,0.653638332277218,0.237270619111097,0.539325232640658,0.98110732562673,0,0,18.231430594448,16.8745344645874,76.4445299204818,0,0,0,0,0,33.9704264391081,0,0,0.100528972411631,0.277765335475589,68.0939358098579,250.624283252378,7.21656710126366,0.695582429850461,13.6194085313553,0.288732895522148,0,0,0,0,0,0,0,0,0.335964256397719,0,1.88072897675981,1.74380363108377,1.53353071666084,0.492663237895943,0.088048434013226,5.39053100406007,1.72943944100354,4.16600030307054,1.26995788584338,0,0,27.3715913636328,4.52440967894623,0,0.285826432630578,28.1449021706855,34.4408454378291,37.0358343395798,11.5051827024422,203.864174135573,94.673908286272,6.64845291462176,15.6011155367049,227.114111473471,209.936715394452,173.174416360465,20.5888310867732,168.755319276739,268.376349790531,71.9876967289154,14.9264618471869,99.7859359896121,0.602878754119172,1.74306691720059,0.299918973546171,1.2162378064119,0,0,29.9531069364478,128.645368134208,57.0547620162874,46.9091433602957,84.8617212133083,167.422000629302,0,0,0,0.256686072559497,0.254094624222463,0,0,0.167516265334349,0,0,0,0,120.114970393038,94.532228480279,60.7633653087408,108.14484799602,141.672617104946,208.79799750493,100.15590981877,68.0138185384645,61.4000260951159,64.1533042013531,87.6777790066776,68.954069034597,127.80579688255,70.8800190015121,60.0500991668998,0,0.215714200818617,0.320182673410333,0,0,7.86214762657169,10.9167435440262,39.1328031884559,54.1673982255832,4.74114852246094,39.9131654272029,9.00781958404202,4.45254199334973,28.5287933534913,18.6439811578783,33.0151167175513,18.1739050214267,47.4138344116634,0,0.802025881213139,0.184161977871793,7.69256802702865,16.752387456618,9.70320670699738,0.902399225814824,0.308061348417659,0,0,0.211103257785751,0,0,0.863663664408557,0,2.16757150035082,3.51182841698397,0,0,0,0,0,0.512900250232778,1.96808787419823,1.30151357865721,7.21287081534056,20.6031295841273,11.6338394888029,2.87132768998086,4.55042172225565,3.21367859688319,14.2105955889419,62.5437385485456,65.8530764575096,66.8507376549973,104.627318501699,106.587270026958,74.0619392245917,10.9509403845487,0.165284915360978,0.384380134730212,0.127612712494584,0.2023155617111,8.36721988735114,4.40737285562896,4.8792608911242,33.5756602391937,8.51689648507235,4.34966496037536,6.30102344953328,3.2918723950658,33.1220948730104,10.440521015718,37.5541482029935,18.9364365570387,34.6630580307476,17.1829753880006,13.3441268833869,36.33423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| ||
|short_description=p1@TWIST1 | |short_description=p1@TWIST1 | ||
}} | }} |
Latest revision as of 14:58, 17 September 2015
Short description: | p1@TWIST1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TWIST1_5end |
Coexpression cluster: | NA |
Association with transcript: | 26bp_to_ENST00000242261, NM_000474, uc003sum.2_5end |
EntrezGene: | TWIST1 |
HGNC: | 12428 |
UniProt: | Q15672 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.84e-27 | 76 |
skin fibroblast | 1.93e-14 | 23 |
muscle precursor cell | 2.28e-13 | 58 |
myoblast | 2.28e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.28e-13 | 58 |
muscle cell | 5.48e-12 | 55 |
electrically responsive cell | 5.28e-10 | 61 |
electrically active cell | 5.28e-10 | 61 |
multi fate stem cell | 3.83e-09 | 427 |
stem cell | 1.99e-08 | 441 |
somatic stem cell | 2.42e-08 | 433 |
stromal cell | 2.64e-08 | 28 |
smooth muscle cell | 8.49e-08 | 43 |
smooth muscle myoblast | 8.49e-08 | 43 |
fat cell | 9.62e-08 | 15 |
migratory neural crest cell | 3.82e-07 | 41 |
extracellular matrix secreting cell | 8.01e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 5.13e-18 | 73 |
somite | 1.21e-17 | 71 |
presomitic mesoderm | 1.21e-17 | 71 |
presumptive segmental plate | 1.21e-17 | 71 |
dermomyotome | 1.21e-17 | 71 |
trunk paraxial mesoderm | 1.21e-17 | 71 |
paraxial mesoderm | 2.17e-17 | 72 |
presumptive paraxial mesoderm | 2.17e-17 | 72 |
multilaminar epithelium | 1.80e-15 | 83 |
integument | 8.11e-15 | 46 |
integumental system | 8.11e-15 | 46 |
epithelial vesicle | 8.49e-15 | 78 |
surface structure | 1.84e-13 | 99 |
skeletal muscle tissue | 4.14e-13 | 62 |
striated muscle tissue | 4.14e-13 | 62 |
myotome | 4.14e-13 | 62 |
skin of body | 7.04e-13 | 41 |
muscle tissue | 1.25e-12 | 64 |
musculature | 1.25e-12 | 64 |
musculature of body | 1.25e-12 | 64 |
trunk mesenchyme | 8.32e-09 | 122 |
mesenchyme | 1.09e-08 | 160 |
entire embryonic mesenchyme | 1.09e-08 | 160 |
adipose tissue | 6.20e-07 | 14 |