FFCP PHASE1:Hg19::chr8:128231226..128231265,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=67bp_to_ENST00000500112,uc003ysa.1_5end | |association_with_transcript=67bp_to_ENST00000500112,uc003ysa.1_5end | ||
|cluster_id=chr8:128231226..128231265,- | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_2_at_ENST00000500112_5end,CAGE_peak_2_at_uc003ysa.1_5end | |description=CAGE_peak_2_at_ENST00000500112_5end,CAGE_peak_2_at_uc003ysa.1_5end | ||
|id=chr8:128231226..128231265,- | |id=chr8:128231226..128231265,- | ||
|ontology_enrichment_celltype=CL:0000223!9.66e-28!59;CL:0000066!2.58e-24!254;CL:0002076!8.21e-23!43;CL:0002368!7.60e-13!13;CL:0002202!5.19e-08!9;CL:0002632!5.19e-08!9;CL:0002251!2.09e-07!21 | |ontology_enrichment_celltype=CL:0000223!9.66e-28!59;CL:0000066!2.58e-24!254;CL:0002076!8.21e-23!43;CL:0002368!7.60e-13!13;CL:0002202!5.19e-08!9;CL:0002632!5.19e-08!9;CL:0002251!2.09e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.51e-18;13!CL:0002076;1.00e-14;42!CL:0002202;2.63e-10;9!CL:0002632;2.63e-10;9!CL:0000307;5.96e-09;3!CL:0002504;2.68e-08;3!CL:1000279;2.68e-08;3!CL:1000280;2.68e-08;3!CL:0000083;4.03e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.49e-26,253;CL:0000223,4.59e-22,58;CL:0002076,4.64e-20,42;CL:0002368,1.83e-18,13;CL:0002202,2.61e-10,9;CL:0002632,2.61e-10,9;CL:0000068,6.05e-09,3;CL:0000069,6.05e-09,3;CL:0000307,6.05e-09,3;CL:0000377,6.05e-09,3;CL:0002504,3.53e-08,3;CL:1000279,3.53e-08,3;CL:1000280,3.53e-08,3;CL:0000083,3.76e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;1.70e-13;58!UBERON:0008947;2.76e-10;29!CL:0000377;5.96e-09;3!UBERON:0008814;7.86e-07;2!UBERON:0010056;7.86e-07;2 | |||
|ontology_enrichment_disease=DOID:305!1.53e-25!106;DOID:0050687!1.59e-16!143;DOID:299!3.99e-14!25;DOID:1749!6.00e-08!14;DOID:162!3.78e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.28e-11;14!DOID:305;1.89e-07;106!DOID:1793;4.03e-07;4!DOID:4074;4.82e-07;2!DOID:4905;4.82e-07;2!DOID:3498;4.82e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.52e-25,106;DOID:0050687,1.22e-17,143;DOID:1749,1.30e-11,14;DOID:162,4.41e-09,235;DOID:14566,1.07e-08,239;DOID:1793,3.76e-07,4;DOID:4074,4.82e-07,2;DOID:4905,4.82e-07,2;DOID:3498,4.82e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.07e-25!169;UBERON:0000925!2.07e-25!169;UBERON:0006595!2.07e-25!169;UBERON:0001007!6.96e-24!155;UBERON:0001555!6.96e-24!155;UBERON:0007026!6.96e-24!155;UBERON:0004921!1.13e-21!129;UBERON:0004185!1.13e-21!129;UBERON:0000077!3.82e-19!130;UBERON:0001041!1.22e-18!98;UBERON:0001737!4.01e-16!9;UBERON:0001004!2.09e-13!72;UBERON:0003104!3.00e-13!238;UBERON:0009142!3.00e-13!238;UBERON:0000065!6.75e-13!53;UBERON:0001557!2.37e-11!19;UBERON:0000344!3.62e-11!12;UBERON:0000072!1.09e-10!46;UBERON:0008947!5.70e-10!38;UBERON:0003258!5.70e-10!38;UBERON:0000466!6.16e-10!126;UBERON:0009497!2.04e-09!25;UBERON:0000015!2.04e-09!25;UBERON:0002423!2.04e-09!25;UBERON:0006235!2.04e-09!25;UBERON:0004161!2.04e-09!25;UBERON:0008835!1.55e-08!22;UBERON:0003894!1.55e-08!22;UBERON:0000481!1.61e-08!347;UBERON:0007499!2.08e-08!25;UBERON:0000063!4.94e-08!97;UBERON:0009854!5.05e-08!23;UBERON:0009856!6.00e-08!26;UBERON:0003929!1.06e-07!54;UBERON:0005177!1.44e-07!107;UBERON:0005911!1.49e-07!82;UBERON:0001048!1.70e-07!168;UBERON:0000926!6.09e-07!448;UBERON:0004120!6.09e-07!448;UBERON:0006603!6.09e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.17e-27;9!UBERON:0001557;4.17e-27;9!UBERON:0000065;1.38e-17;44!UBERON:0000072;7.35e-16;37!UBERON:0001004;4.83e-09;65!UBERON:0007196;8.12e-08;15!UBERON:0001558;8.12e-08;15!UBERON:0000344;2.52e-07;20!UBERON:0002394;4.66e-07;4!UBERON:0003928;4.66e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.19e-27,9;UBERON:0000065,1.10e-23,54;UBERON:0004921,6.52e-22,118;UBERON:0004119,1.52e-21,160;UBERON:0000925,1.52e-21,160;UBERON:0006595,1.52e-21,160;UBERON:0001557,1.67e-20,19;UBERON:0001041,2.90e-19,87;UBERON:0000072,3.07e-19,47;UBERON:0001007,1.84e-18,145;UBERON:0001555,1.84e-18,145;UBERON:0007026,1.84e-18,145;UBERON:0008947,9.07e-18,38;UBERON:0003258,9.07e-18,38;UBERON:0001004,4.46e-17,74;UBERON:0007196,9.21e-08,15;UBERON:0001558,9.21e-08,15;UBERON:0000344,2.34e-07,20;UBERON:0011216,3.91e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,2.09340350391728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.6024118375565,9.61360426433648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0.512321413058201,0.236482229888585,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0.434377689410233,3.02699751316684,1.84138817993782,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.9216104775583,2.22470665670658,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70296429550139,0.312160076830321,3.99330275081114,0,0.117434498643765,0.323745888736263,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,81.1584648273329,80.2463124771764,89.6561031166553,84.0440072220842,82.3584298669295,88.501940928439,66.2021723066407,68.0888483984951,71.5629711920286,0,0,0,0,0,0.982827216677626,1.77236972004421,0,1.72183813960359,0.171567810298526,0.109750285408626,0,0,3.33318402570707,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.857867961948885,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77976734060731,0,0.276242966807689,0,0,0,0,0.0770153371044148,0,1.46139224653261,0.422206515571503,0,0,0,0,0,0,1.78413391131527,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0.616194468458578,0.307007349452259,0,0.537101224341368,0,0,0,1.15699440752685,1.53752053892085,2.29702882490251,2.023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87795932133304,1.37268514868027,1.06031162111118,0,0,0,1.46290121726877,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7013188797676,1.34060455107157,5.44454924306613,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,55.5259823376623,0,0,0,0,0,0,7.27933644293347,4.47552936689023,0,0,0,0,0,0,0,0,0,0,5.23449862113298,0,0,0,0,0,0,0,0,0,0,0,7.29887705577234,5.71637351542273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632994193584081,3.10142335502381,1.55488378577335,0.216388639742091,0,0,0.611030144933625,0,0,0,0,0,0,0,18.1968095606843,22.8213556762047,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0.173559738335131,0,0,0,0,41.2181971291503,47.4349667889344,38.4300339009019,0.581934098930517,0,0,0,0,0,0,0.0801588202515337,0.213452994739353,0,0.288180834308212,0,0,12.3887126269809,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26053091691558,0.659326867049332,0.741438982396034,0.885847333632739,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,2.22412889249628,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.429642228169954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.538906238766,0,0,0,0,0,11.8897581561528,3.73246356019784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,4.4022863645203,17.9064782533024,0,0,0,0,0,0,0,0.327543835020193,8.13208474193749,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0653111881824,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0.22910686854405,1.24082554265728,1.91107787795487,0.223710863595585,6.67421588583652,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.01300260145528,0,0,0,0,0,0,0,3.03541695629618,44.8176487078929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852935927603924,0.23806443146374,0,0,0,0,0,5.00748520163011,0,1.27968900727716,1.14755528628282,0,1.38385556638657,0,0,2.96423166951737,0,0,0,0,0,0.641136984606466 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| ||
|short_description=p2@ENST00000500112,p2@uc003ysa.1 | |short_description=p2@ENST00000500112,p2@uc003ysa.1 | ||
}} | }} |
Latest revision as of 14:51, 31 July 2015
Short description: | p2@ENST00000500112, p2@uc003ysa.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000500112_5end, CAGE_peak_2_at_uc003ysa.1_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 67bp_to_ENST00000500112, uc003ysa.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.49e-26 | 253 |
endodermal cell | 4.59e-22 | 58 |
endo-epithelial cell | 4.64e-20 | 42 |
respiratory epithelial cell | 1.83e-18 | 13 |
epithelial cell of tracheobronchial tree | 2.61e-10 | 9 |
epithelial cell of lower respiratory tract | 2.61e-10 | 9 |
duct epithelial cell | 6.05e-09 | 3 |
branched duct epithelial cell | 6.05e-09 | 3 |
tracheal epithelial cell | 6.05e-09 | 3 |
tracheoblast | 6.05e-09 | 3 |
enteric smooth muscle cell | 3.53e-08 | 3 |
smooth muscle cell of large intestine | 3.53e-08 | 3 |
smooth muscle cell of colon | 3.53e-08 | 3 |
epithelial cell of pancreas | 3.76e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.19e-27 | 9 |
respiratory tract | 1.10e-23 | 54 |
subdivision of digestive tract | 6.52e-22 | 118 |
endoderm-derived structure | 1.52e-21 | 160 |
endoderm | 1.52e-21 | 160 |
presumptive endoderm | 1.52e-21 | 160 |
upper respiratory tract | 1.67e-20 | 19 |
foregut | 2.90e-19 | 87 |
segment of respiratory tract | 3.07e-19 | 47 |
digestive system | 1.84e-18 | 145 |
digestive tract | 1.84e-18 | 145 |
primitive gut | 1.84e-18 | 145 |
respiratory primordium | 9.07e-18 | 38 |
endoderm of foregut | 9.07e-18 | 38 |
respiratory system | 4.46e-17 | 74 |
tracheobronchial tree | 9.21e-08 | 15 |
lower respiratory tract | 9.21e-08 | 15 |
mucosa | 2.34e-07 | 20 |
organ system subdivision | 3.91e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.52e-25 | 106 |
cell type cancer | 1.22e-17 | 143 |
squamous cell carcinoma | 1.30e-11 | 14 |
cancer | 4.41e-09 | 235 |
disease of cellular proliferation | 1.07e-08 | 239 |
pancreatic cancer | 3.76e-07 | 4 |
pancreas adenocarcinoma | 4.82e-07 | 2 |
pancreatic carcinoma | 4.82e-07 | 2 |
pancreatic ductal adenocarcinoma | 4.82e-07 | 2 |