FFCP PHASE1:Hg19::chrX:13752832..13752889,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8481 | |EntrezGene=8481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2567 | |HGNC=2567 | ||
|TSSclassifier=strong | |||
|UniProt=O75665,A6NF31,E9KL37 | |UniProt=O75665,A6NF31,E9KL37 | ||
|association_with_transcript=0bp_to_ENST00000340096,ENST00000380550,ENST00000380567,ENST00000398395,ENST00000485052,ENST00000490265,NM_003611,uc004cvp.3,uc004cvq.3,uc004cvr.3,uc004cvs.3,uc004cvu.3,uc004cvv.3,uc010nen.2,uc011mil.1_5end | |association_with_transcript=0bp_to_ENST00000340096,ENST00000380550,ENST00000380567,ENST00000398395,ENST00000485052,ENST00000490265,NM_003611,uc004cvp.3,uc004cvq.3,uc004cvr.3,uc004cvs.3,uc004cvu.3,uc004cvv.3,uc010nen.2,uc011mil.1_5end | ||
|cluster_id=chrX:13752832..13752889,+ | |||
|description=CAGE_peak_1_at_OFD1_5end | |description=CAGE_peak_1_at_OFD1_5end | ||
|id=chrX:13752832..13752889,+ | |id=chrX:13752832..13752889,+ | ||
|ontology_enrichment_celltype=CL:0000791!9.13e-12!18;CL:0000789!9.13e-12!18;CL:0002420!9.13e-12!18;CL:0002419!9.13e-12!18;CL:0000790!9.13e-12!18;CL:0000037!4.48e-09!172;CL:0000566!4.48e-09!172;CL:0000738!6.77e-09!140;CL:0000625!1.68e-08!11;CL:0002032!1.36e-07!165;CL:0000837!1.36e-07!165;CL:0000084!3.69e-07!25;CL:0000827!3.69e-07!25;CL:0000838!4.24e-07!52 | |ontology_enrichment_celltype=CL:0000791!9.13e-12!18;CL:0000789!9.13e-12!18;CL:0002420!9.13e-12!18;CL:0002419!9.13e-12!18;CL:0000790!9.13e-12!18;CL:0000037!4.48e-09!172;CL:0000566!4.48e-09!172;CL:0000738!6.77e-09!140;CL:0000625!1.68e-08!11;CL:0002032!1.36e-07!165;CL:0000837!1.36e-07!165;CL:0000084!3.69e-07!25;CL:0000827!3.69e-07!25;CL:0000838!4.24e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.92e-12;18!CL:0000789;7.92e-12;18!CL:0002419;7.92e-12;18!CL:0000625;1.54e-08;11!CL:0000084;2.83e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.12e-12,18;CL:0000789,9.12e-12,18;CL:0002420,9.12e-12,18;CL:0002419,9.12e-12,18;CL:0000790,9.12e-12,18;CL:0000037,3.54e-09,168;CL:0000738,4.93e-09,136;CL:0000625,1.67e-08,11;CL:0002032,1.12e-07,161;CL:0000837,1.12e-07,161;CL:0000084,3.69e-07,25;CL:0000827,3.69e-07,25;CL:0000838,4.24e-07,52;CL:0000988,8.87e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;7.92e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.04e-13!115;UBERON:0001049!7.34e-10!57;UBERON:0005068!7.34e-10!57;UBERON:0006241!7.34e-10!57;UBERON:0007135!7.34e-10!57;UBERON:0002780!5.61e-09!41;UBERON:0001890!5.61e-09!41;UBERON:0006240!5.61e-09!41;UBERON:0003080!1.16e-08!42;UBERON:0001017!5.70e-08!82;UBERON:0000073!5.90e-08!94;UBERON:0001016!5.90e-08!94;UBERON:0002616!6.06e-08!59;UBERON:0000955!6.49e-08!69;UBERON:0006238!6.49e-08!69;UBERON:0005743!8.63e-08!86;UBERON:0002020!6.00e-07!34;UBERON:0003528!6.00e-07!34;UBERON:0001893!8.63e-07!34;UBERON:0002791!9.74e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.91e-07;41!UBERON:0001890;7.91e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.34e-13,114;UBERON:0001049,3.86e-10,56;UBERON:0005068,3.86e-10,56;UBERON:0006241,3.86e-10,56;UBERON:0007135,3.86e-10,56;UBERON:0000073,2.04e-09,53;UBERON:0002616,2.04e-09,53;UBERON:0002780,5.61e-09,41;UBERON:0001890,5.61e-09,41;UBERON:0003080,5.61e-09,41;UBERON:0006240,5.61e-09,41;UBERON:0001016,2.78e-08,89;UBERON:0001017,3.80e-08,81;UBERON:0000955,4.11e-08,68;UBERON:0006238,4.11e-08,68;UBERON:0003528,6.00e-07,34;UBERON:0002020,6.00e-07,34;UBERON:0001893,8.63e-07,34 | |||
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| ||
|short_description=p1@OFD1 | |short_description=p1@OFD1 | ||
}} | }} |
Latest revision as of 16:01, 19 September 2015
Short description: | p1@OFD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_OFD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000340096, ENST00000380550, ENST00000380567, ENST00000398395, ENST00000485052, ENST00000490265, NM_003611, uc004cvp.3, uc004cvq.3, uc004cvr.3, uc004cvs.3, uc004cvu.3, uc004cvv.3, uc010nen.2, uc011mil.1_5end |
EntrezGene: | OFD1 |
HGNC: | 2567 |
UniProt: | O75665A6NF31E9KL37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.12e-12 | 18 |
alpha-beta T cell | 9.12e-12 | 18 |
immature T cell | 9.12e-12 | 18 |
mature T cell | 9.12e-12 | 18 |
immature alpha-beta T cell | 9.12e-12 | 18 |
hematopoietic stem cell | 3.54e-09 | 168 |
leukocyte | 4.93e-09 | 136 |
CD8-positive, alpha-beta T cell | 1.67e-08 | 11 |
hematopoietic oligopotent progenitor cell | 1.12e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-07 | 161 |
T cell | 3.69e-07 | 25 |
pro-T cell | 3.69e-07 | 25 |
lymphoid lineage restricted progenitor cell | 4.24e-07 | 52 |
hematopoietic cell | 8.87e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.34e-13 | 114 |
neural tube | 3.86e-10 | 56 |
neural rod | 3.86e-10 | 56 |
future spinal cord | 3.86e-10 | 56 |
neural keel | 3.86e-10 | 56 |
regional part of nervous system | 2.04e-09 | 53 |
regional part of brain | 2.04e-09 | 53 |
regional part of forebrain | 5.61e-09 | 41 |
forebrain | 5.61e-09 | 41 |
anterior neural tube | 5.61e-09 | 41 |
future forebrain | 5.61e-09 | 41 |
nervous system | 2.78e-08 | 89 |
central nervous system | 3.80e-08 | 81 |
brain | 4.11e-08 | 68 |
future brain | 4.11e-08 | 68 |
brain grey matter | 6.00e-07 | 34 |
gray matter | 6.00e-07 | 34 |
telencephalon | 8.63e-07 | 34 |