FFCP PHASE1:Hg19::chr3:80727046..80727051,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:80727046..80727051,- | |||
|coexpression_cluster_id=C101 | |||
|description=CAGE_peak_at_chr3:80727046..80727051,- | |description=CAGE_peak_at_chr3:80727046..80727051,- | ||
|id=chr3:80727046..80727051,- | |id=chr3:80727046..80727051,- | ||
|ontology_enrichment_celltype=CL:0002564!6.78e-14!3;CL:0002602!4.56e-10!2 | |ontology_enrichment_celltype=CL:0002564!6.78e-14!3;CL:0002602!4.56e-10!2 | ||
|ontology_enrichment_celltype_v019=CL:0002602;1.71e-44;2!CL:0002564;4.49e-30;3!CL:0002553;1.34e-23;1!CL:0000167;3.28e-23;1!CL:0000164;3.28e-23;1!CL:0000502;3.28e-23;1!CL:0000172;3.28e-23;1!CL:0000173;3.28e-23;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,1.22e-44,2;CL:0002564,4.84e-30,3;CL:0002553,1.34e-23,1;CL:0000167,3.28e-23,1;CL:0000164,3.28e-23,1;CL:0000502,3.28e-23,1;CL:0000172,3.28e-23,1;CL:0000173,3.28e-23,1;CL:0002351,3.28e-23,1 | |||
|ontology_enrichment_development_v019=CL:0002351;3.28e-23;1 | |||
|ontology_enrichment_disease=DOID:171!5.12e-07!10;DOID:169!5.50e-07!6;DOID:4556!7.68e-07!3 | |||
|ontology_enrichment_disease_v019=DOID:4430;3.28e-23;1!DOID:169;1.52e-15;6!DOID:171;1.01e-09;10!DOID:4556;9.66e-09;3!DOID:1324;6.79e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,3.28e-23,1;DOID:169,1.63e-15,6;DOID:171,1.05e-09,10;DOID:4556,9.66e-09,3;DOID:1324,6.79e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0002242!6.78e-14!3;UBERON:0003068!6.78e-14!3;UBERON:0002328!6.78e-14!3;UBERON:0004880!6.78e-14!3;UBERON:0009568!4.56e-10!2;UBERON:0002216!4.56e-10!2;UBERON:0002209!4.56e-10!2;UBERON:0002213!4.56e-10!2;UBERON:0004267!4.56e-10!2;UBERON:0006444!4.56e-10!2;UBERON:0001995!4.56e-10!2;UBERON:0004715!4.56e-10!2;UBERON:0001468!4.56e-10!2;UBERON:0001130!4.56e-10!2;UBERON:0001066!4.56e-10!2;UBERON:0005174!2.04e-08!5;UBERON:0001137!2.04e-08!5;UBERON:0002046!3.70e-08!5;UBERON:0004117!3.70e-08!5;UBERON:0007689!3.70e-08!5;UBERON:0007123!3.70e-08!5;UBERON:0003091!3.70e-08!5;UBERON:0000349!3.89e-08!5;UBERON:0002418!5.77e-07!3;UBERON:0004755!5.77e-07!3 | |ontology_enrichment_uberon=UBERON:0002242!6.78e-14!3;UBERON:0003068!6.78e-14!3;UBERON:0002328!6.78e-14!3;UBERON:0004880!6.78e-14!3;UBERON:0009568!4.56e-10!2;UBERON:0002216!4.56e-10!2;UBERON:0002209!4.56e-10!2;UBERON:0002213!4.56e-10!2;UBERON:0004267!4.56e-10!2;UBERON:0006444!4.56e-10!2;UBERON:0001995!4.56e-10!2;UBERON:0004715!4.56e-10!2;UBERON:0001468!4.56e-10!2;UBERON:0001130!4.56e-10!2;UBERON:0001066!4.56e-10!2;UBERON:0005174!2.04e-08!5;UBERON:0001137!2.04e-08!5;UBERON:0002046!3.70e-08!5;UBERON:0004117!3.70e-08!5;UBERON:0007689!3.70e-08!5;UBERON:0007123!3.70e-08!5;UBERON:0003091!3.70e-08!5;UBERON:0000349!3.89e-08!5;UBERON:0002418!5.77e-07!3;UBERON:0004755!5.77e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;7.56e-70;5!UBERON:0002216;7.56e-70;5!UBERON:0011134;7.56e-70;5!UBERON:0002209;7.56e-70;5!UBERON:0002213;7.56e-70;5!UBERON:0007844;7.56e-70;5!UBERON:0011138;7.56e-70;5!UBERON:0001130;7.56e-70;5!UBERON:0001066;7.56e-70;5!UBERON:0001468;7.56e-70;5!UBERON:0006444;1.71e-44;2!UBERON:0001995;1.71e-44;2!UBERON:0004715;1.71e-44;2!UBERON:0004905;6.20e-44;8!UBERON:0000982;6.20e-44;8!UBERON:0004770;6.20e-44;8!UBERON:0002418;4.49e-30;3!UBERON:0004755;4.49e-30;3!UBERON:0002242;4.49e-30;3!UBERON:0000075;2.83e-22;16!UBERON:0004765;6.75e-14;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,6.33e-70,5;UBERON:0002216,6.33e-70,5;UBERON:0011134,6.33e-70,5;UBERON:0002209,6.33e-70,5;UBERON:0002213,6.33e-70,5;UBERON:0005856,6.33e-70,5;UBERON:0005866,6.33e-70,5;UBERON:0005863,6.33e-70,5;UBERON:0007844,6.33e-70,5;UBERON:0011138,6.33e-70,5;UBERON:0001130,6.33e-70,5;UBERON:0001066,6.33e-70,5;UBERON:0001468,6.33e-70,5;UBERON:0006444,1.22e-44,2;UBERON:0001995,1.22e-44,2;UBERON:0004715,1.22e-44,2;UBERON:0004905,5.55e-44,8;UBERON:0000982,5.55e-44,8;UBERON:0004770,5.55e-44,8;UBERON:0002418,3.59e-30,3;UBERON:0004755,3.59e-30,3;UBERON:0002242,4.84e-30,3;UBERON:0003068,4.84e-30,3;UBERON:0002328,4.84e-30,3;UBERON:0004880,4.84e-30,3;UBERON:0000075,2.68e-22,16;UBERON:0011137,3.24e-07,14 | |||
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| ||
|short_description=p@chr3:80727046..80727051,- | |short_description=p@chr3:80727046..80727051,- | ||
}} | }} |
Latest revision as of 23:42, 29 July 2015
Short description: | p@chr3:80727046..80727051, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:80727046..80727051, - |
Coexpression cluster: | C101_small_cerebellum_maxillary_colon_parietal_epididymis_merkel |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 1.22e-44 | 2 |
nucleus pulposus cell of intervertebral disc | 4.84e-30 | 3 |
lung fibroblast | 1.34e-23 | 1 |
peptide hormone secreting cell | 3.28e-23 | 1 |
enteroendocrine cell | 3.28e-23 | 1 |
type D enteroendocrine cell | 3.28e-23 | 1 |
somatostatin secreting cell | 3.28e-23 | 1 |
pancreatic D cell | 3.28e-23 | 1 |
progenitor cell of endocrine pancreas | 3.28e-23 | 1 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 6.33e-70 | 5 |
symphysis | 6.33e-70 | 5 |
nonsynovial joint | 6.33e-70 | 5 |
fibrous joint | 6.33e-70 | 5 |
cartilaginous joint | 6.33e-70 | 5 |
developing mesenchymal condensation | 6.33e-70 | 5 |
pre-cartilage condensation | 6.33e-70 | 5 |
cartilaginous condensation | 6.33e-70 | 5 |
cartilage element | 6.33e-70 | 5 |
post-cranial axial skeletal system | 6.33e-70 | 5 |
vertebral column | 6.33e-70 | 5 |
intervertebral disk | 6.33e-70 | 5 |
intervertebral joint | 6.33e-70 | 5 |
annulus fibrosus | 1.22e-44 | 2 |
fibrocartilage | 1.22e-44 | 2 |
annulus fibrosus disci intervertebralis | 1.22e-44 | 2 |
articulation | 5.55e-44 | 8 |
skeletal joint | 5.55e-44 | 8 |
articular system | 5.55e-44 | 8 |
cartilage tissue | 3.59e-30 | 3 |
skeletal tissue | 3.59e-30 | 3 |
nucleus pulposus | 4.84e-30 | 3 |
axial mesoderm | 4.84e-30 | 3 |
notochord | 4.84e-30 | 3 |
chordamesoderm | 4.84e-30 | 3 |
subdivision of skeletal system | 2.68e-22 | 16 |
axial skeletal system | 3.24e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 3.28e-23 | 1 |
neuroendocrine tumor | 1.63e-15 | 6 |
neuroectodermal tumor | 1.05e-09 | 10 |
lung large cell carcinoma | 9.66e-09 | 3 |
lung cancer | 6.79e-07 | 15 |