FFCP PHASE1:Hg19::chr4:146402843..146402864,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4086 | |EntrezGene=4086 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |HGNC=6767 | ||
|TSSclassifier=strong | |||
|UniProt=D6RDN7 | |UniProt=D6RDN7 | ||
|association_with_transcript=0bp_to_ENST00000514831_5end | |association_with_transcript=0bp_to_ENST00000514831_5end | ||
|cluster_id=chr4:146402843..146402864,+ | |||
|description=CAGE_peak_3_at_SMAD1_5end | |description=CAGE_peak_3_at_SMAD1_5end | ||
|id=chr4:146402843..146402864,+ | |id=chr4:146402843..146402864,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.05e-15!24;CL:0002078!8.59e-13!44;CL:0000071!1.09e-11!18;CL:0002546!1.09e-11!18;CL:0000115!1.38e-11!35;CL:0000066!1.10e-08!254;CL:0000220!3.82e-08!246;CL:0002321!4.35e-08!248;CL:0000213!4.10e-07!57;CL:0000215!4.10e-07!57 | |ontology_enrichment_celltype=CL:0002139!1.05e-15!24;CL:0002078!8.59e-13!44;CL:0000071!1.09e-11!18;CL:0002546!1.09e-11!18;CL:0000115!1.38e-11!35;CL:0000066!1.10e-08!254;CL:0000220!3.82e-08!246;CL:0002321!4.35e-08!248;CL:0000213!4.10e-07!57;CL:0000215!4.10e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.22e-18;24!CL:0000071;7.58e-14;18!CL:0000115;1.68e-13;36!CL:0002078;1.47e-10;45!CL:1000413;4.69e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.67e-18,24;CL:0002078,7.95e-16,45;CL:0000115,1.76e-15,36;CL:0000071,1.91e-13,18;CL:0002546,1.91e-13,18;CL:0000213,5.97e-09,58;CL:0000215,5.97e-09,58;CL:1000413,7.84e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;7.58e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!1.30e-15!625;UBERON:0000468!1.94e-15!659;UBERON:0000480!2.79e-15!626;UBERON:0000119!4.24e-13!312;UBERON:0004111!1.27e-12!241;UBERON:0000483!1.38e-12!309;UBERON:0001986!1.09e-11!18;UBERON:0004638!1.09e-11!18;UBERON:0004852!1.09e-11!18;UBERON:0000477!1.67e-11!286;UBERON:0000922!5.45e-11!612;UBERON:0002050!1.77e-10!605;UBERON:0005423!1.77e-10!605;UBERON:0000923!3.74e-10!604;UBERON:0005291!3.74e-10!604;UBERON:0006598!3.74e-10!604;UBERON:0002532!3.74e-10!604;UBERON:0000025!2.22e-08!194;UBERON:0006914!2.85e-08!25;UBERON:0000487!5.72e-08!22;UBERON:0000481!2.16e-07!347 | |ontology_enrichment_uberon=UBERON:0000467!1.30e-15!625;UBERON:0000468!1.94e-15!659;UBERON:0000480!2.79e-15!626;UBERON:0000119!4.24e-13!312;UBERON:0004111!1.27e-12!241;UBERON:0000483!1.38e-12!309;UBERON:0001986!1.09e-11!18;UBERON:0004638!1.09e-11!18;UBERON:0004852!1.09e-11!18;UBERON:0000477!1.67e-11!286;UBERON:0000922!5.45e-11!612;UBERON:0002050!1.77e-10!605;UBERON:0005423!1.77e-10!605;UBERON:0000923!3.74e-10!604;UBERON:0005291!3.74e-10!604;UBERON:0006598!3.74e-10!604;UBERON:0002532!3.74e-10!604;UBERON:0000025!2.22e-08!194;UBERON:0006914!2.85e-08!25;UBERON:0000487!5.72e-08!22;UBERON:0000481!2.16e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.58e-14;18!UBERON:0001986;7.58e-14;18!UBERON:0004852;7.58e-14;18!UBERON:0000487;1.46e-09;22!UBERON:0006914;3.50e-09;25!UBERON:0003915;4.69e-07;9!UBERON:0004700;4.69e-07;9!UBERON:0001917;4.69e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.91e-13,18;UBERON:0001986,1.91e-13,18;UBERON:0004852,1.91e-13,18;UBERON:0004111,1.74e-12,240;UBERON:0000119,4.43e-10,309;UBERON:0000483,1.36e-09,306;UBERON:0000487,2.74e-09,22;UBERON:0006914,4.20e-09,25;UBERON:0003914,3.10e-08,117;UBERON:0000025,4.92e-08,192;UBERON:0000055,4.93e-08,68;UBERON:0004872,3.91e-07,83;UBERON:0003915,7.84e-07,9;UBERON:0004700,7.84e-07,9;UBERON:0001917,7.84e-07,9 | |||
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| ||
|short_description=p3@SMAD1 | |short_description=p3@SMAD1 | ||
}} | }} |
Latest revision as of 23:07, 15 September 2015
Short description: | p3@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000514831_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | D6RDN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.67e-18 | 24 |
meso-epithelial cell | 7.95e-16 | 45 |
endothelial cell | 1.76e-15 | 36 |
blood vessel endothelial cell | 1.91e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.91e-13 | 18 |
lining cell | 5.97e-09 | 58 |
barrier cell | 5.97e-09 | 58 |
endothelial cell of artery | 7.84e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.91e-13 | 18 |
endothelium | 1.91e-13 | 18 |
cardiovascular system endothelium | 1.91e-13 | 18 |
anatomical conduit | 1.74e-12 | 240 |
cell layer | 4.43e-10 | 309 |
epithelium | 1.36e-09 | 306 |
simple squamous epithelium | 2.74e-09 | 22 |
squamous epithelium | 4.20e-09 | 25 |
epithelial tube | 3.10e-08 | 117 |
tube | 4.92e-08 | 192 |
vessel | 4.93e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 3.91e-07 | 83 |
endothelial tube | 7.84e-07 | 9 |
arterial system endothelium | 7.84e-07 | 9 |
endothelium of artery | 7.84e-07 | 9 |