FFCP PHASE1:Hg19::chr6:83902933..83903005,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5238 | |EntrezGene=5238 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8907 | |HGNC=8907 | ||
|TSSclassifier=strong | |||
|UniProt=O95394,D6RC77,D6RCD1,D6RIS6,D6RF12 | |UniProt=O95394,D6RC77,D6RCD1,D6RIS6,D6RF12 | ||
|association_with_transcript=0bp_to_ENST00000283977,ENST00000503094,ENST00000505470,ENST00000510258,ENST00000512866,ENST00000515333,uc003pjv.2,uc003pjw.2_5end | |association_with_transcript=0bp_to_ENST00000283977,ENST00000503094,ENST00000505470,ENST00000510258,ENST00000512866,ENST00000515333,uc003pjv.2,uc003pjw.2_5end | ||
|cluster_id=chr6:83902933..83903005,- | |||
|coexpression_cluster_id=C2721 | |||
|description=CAGE_peak_1_at_PGM3_5end | |description=CAGE_peak_1_at_PGM3_5end | ||
|id=chr6:83902933..83903005,- | |id=chr6:83902933..83903005,- | ||
|ontology_enrichment_celltype=CL:0000055!2.87e-24!180;CL:0000057!5.44e-14!75;CL:0000680!2.00e-13!57;CL:0000056!2.00e-13!57;CL:0000355!2.00e-13!57;CL:0000187!1.72e-12!54;CL:0000393!2.73e-12!60;CL:0000211!2.73e-12!60;CL:0000359!2.03e-11!32;CL:0000192!4.04e-11!42;CL:0000514!4.04e-11!42;CL:0002321!2.95e-10!248;CL:0000220!2.98e-10!246;CL:0000183!6.78e-09!59;CL:0002334!2.02e-07!12;CL:0002620!2.33e-07!23;CL:0000222!4.65e-07!119;CL:0002494!6.05e-07!16 | |ontology_enrichment_celltype=CL:0000055!2.87e-24!180;CL:0000057!5.44e-14!75;CL:0000680!2.00e-13!57;CL:0000056!2.00e-13!57;CL:0000355!2.00e-13!57;CL:0000187!1.72e-12!54;CL:0000393!2.73e-12!60;CL:0000211!2.73e-12!60;CL:0000359!2.03e-11!32;CL:0000192!4.04e-11!42;CL:0000514!4.04e-11!42;CL:0002321!2.95e-10!248;CL:0000220!2.98e-10!246;CL:0000183!6.78e-09!59;CL:0002334!2.02e-07!12;CL:0002620!2.33e-07!23;CL:0000222!4.65e-07!119;CL:0002494!6.05e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.27e-10;32!CL:0000192;5.10e-08;43!CL:0002334;1.94e-07;12!CL:0002620;2.32e-07;23!CL:0000187;3.55e-07;55!CL:0000134;5.02e-07;55!CL:0002494;5.79e-07;16!CL:0000723;7.05e-07;61!CL:0000393;7.85e-07;61!CL:0000211;7.85e-07;61!CL:0000048;9.03e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.78e-14,76;CL:0000680,2.86e-13,58;CL:0000056,2.86e-13,58;CL:0000355,2.86e-13,58;CL:0000187,2.43e-12,55;CL:0000393,3.68e-12,61;CL:0000211,3.68e-12,61;CL:0000359,2.03e-11,32;CL:0000192,6.04e-11,43;CL:0000514,6.04e-11,43;CL:0002321,5.61e-10,250;CL:0002334,2.02e-07,12;CL:0002620,2.33e-07,23;CL:0002494,6.05e-07,16;CL:0000222,9.82e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;5.10e-08;43!CL:0000355;4.93e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!2.92e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.17e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.92e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.72e-15!83;UBERON:0002329!4.72e-15!83;UBERON:0003077!4.72e-15!83;UBERON:0003059!4.72e-15!83;UBERON:0007282!4.72e-15!83;UBERON:0009618!4.72e-15!83;UBERON:0007285!4.72e-15!83;UBERON:0004290!2.50e-12!70;UBERON:0005256!6.62e-12!143;UBERON:0001134!9.34e-12!61;UBERON:0002036!9.34e-12!61;UBERON:0003082!9.34e-12!61;UBERON:0000486!2.58e-11!82;UBERON:0002385!3.07e-11!63;UBERON:0001015!3.07e-11!63;UBERON:0000383!3.07e-11!63;UBERON:0000490!3.33e-11!138;UBERON:0000475!2.06e-10!365;UBERON:0002100!3.56e-10!216;UBERON:0001637!8.77e-09!42;UBERON:0003509!8.77e-09!42;UBERON:0004572!8.77e-09!42;UBERON:0004573!2.16e-08!33;UBERON:0004571!2.16e-08!33;UBERON:0004872!8.58e-08!84;UBERON:0000481!3.67e-07!347;UBERON:0003104!4.90e-07!238;UBERON:0009142!4.90e-07!238;UBERON:0003102!6.97e-07!95 | |ontology_enrichment_uberon=UBERON:0000914!4.72e-15!83;UBERON:0002329!4.72e-15!83;UBERON:0003077!4.72e-15!83;UBERON:0003059!4.72e-15!83;UBERON:0007282!4.72e-15!83;UBERON:0009618!4.72e-15!83;UBERON:0007285!4.72e-15!83;UBERON:0004290!2.50e-12!70;UBERON:0005256!6.62e-12!143;UBERON:0001134!9.34e-12!61;UBERON:0002036!9.34e-12!61;UBERON:0003082!9.34e-12!61;UBERON:0000486!2.58e-11!82;UBERON:0002385!3.07e-11!63;UBERON:0001015!3.07e-11!63;UBERON:0000383!3.07e-11!63;UBERON:0000490!3.33e-11!138;UBERON:0000475!2.06e-10!365;UBERON:0002100!3.56e-10!216;UBERON:0001637!8.77e-09!42;UBERON:0003509!8.77e-09!42;UBERON:0004572!8.77e-09!42;UBERON:0004573!2.16e-08!33;UBERON:0004571!2.16e-08!33;UBERON:0004872!8.58e-08!84;UBERON:0000481!3.67e-07!347;UBERON:0003104!4.90e-07!238;UBERON:0009142!4.90e-07!238;UBERON:0003102!6.97e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.20e-07;33!UBERON:0004571;1.20e-07;33 | |||
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|short_description=p1@PGM3 | |short_description=p1@PGM3 | ||
}} | }} |
Latest revision as of 00:07, 20 September 2015
Short description: | p1@PGM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGM3_5end |
Coexpression cluster: | C2721_Preadipocyte_Smooth_Mast_Fibroblast_Mesenchymal_mesenchymal_Myoblast |
Association with transcript: | 0bp_to_ENST00000283977, ENST00000503094, ENST00000505470, ENST00000510258, ENST00000512866, ENST00000515333, uc003pjv.2, uc003pjw.2_5end |
EntrezGene: | PGM3 |
HGNC: | 8907 |
UniProt: | O95394D6RC77D6RCD1D6RIS6D6RF12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.78e-14 | 76 |
muscle precursor cell | 2.86e-13 | 58 |
myoblast | 2.86e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.86e-13 | 58 |
muscle cell | 2.43e-12 | 55 |
electrically responsive cell | 3.68e-12 | 61 |
electrically active cell | 3.68e-12 | 61 |
vascular associated smooth muscle cell | 2.03e-11 | 32 |
smooth muscle cell | 6.04e-11 | 43 |
smooth muscle myoblast | 6.04e-11 | 43 |
embryonic cell | 5.61e-10 | 250 |
preadipocyte | 2.02e-07 | 12 |
skin fibroblast | 2.33e-07 | 23 |
cardiocyte | 6.05e-07 | 16 |
mesodermal cell | 9.82e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.04e-12 | 73 |
somite | 3.21e-12 | 71 |
presomitic mesoderm | 3.21e-12 | 71 |
presumptive segmental plate | 3.21e-12 | 71 |
dermomyotome | 3.21e-12 | 71 |
trunk paraxial mesoderm | 3.21e-12 | 71 |
trunk mesenchyme | 5.07e-12 | 122 |
paraxial mesoderm | 5.25e-12 | 72 |
presumptive paraxial mesoderm | 5.25e-12 | 72 |
unilaminar epithelium | 5.68e-12 | 148 |
skeletal muscle tissue | 1.23e-11 | 62 |
striated muscle tissue | 1.23e-11 | 62 |
myotome | 1.23e-11 | 62 |
multilaminar epithelium | 3.10e-11 | 83 |
muscle tissue | 3.95e-11 | 64 |
musculature | 3.95e-11 | 64 |
musculature of body | 3.95e-11 | 64 |
mesenchyme | 1.49e-10 | 160 |
entire embryonic mesenchyme | 1.49e-10 | 160 |
epithelial vesicle | 8.43e-09 | 78 |
artery | 8.77e-09 | 42 |
arterial blood vessel | 8.77e-09 | 42 |
arterial system | 8.77e-09 | 42 |
systemic artery | 2.16e-08 | 33 |
systemic arterial system | 2.16e-08 | 33 |
trunk | 5.34e-08 | 199 |
surface structure | 7.12e-08 | 99 |
splanchnic layer of lateral plate mesoderm | 1.96e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.92e-08 | 14 |