FFCP PHASE1:Hg19::chr9:104296122..104296161,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56254 | |EntrezGene=56254 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10062 | |HGNC=10062 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VTR2,C9K0V8,C9JMW8 | |UniProt=Q5VTR2,C9K0V8,C9JMW8 | ||
|association_with_transcript=0bp_to_ENST00000389120,ENST00000478347,ENST00000488264,NM_019592,uc004bbn.2_5end | |association_with_transcript=0bp_to_ENST00000389120,ENST00000478347,ENST00000488264,NM_019592,uc004bbn.2_5end | ||
|cluster_id=chr9:104296122..104296161,+ | |||
|description=CAGE_peak_1_at_RNF20_5end | |description=CAGE_peak_1_at_RNF20_5end | ||
|id=chr9:104296122..104296161,+ | |id=chr9:104296122..104296161,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.31e-11;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.33e-29!115;UBERON:0000073!5.19e-20!94;UBERON:0001016!5.19e-20!94;UBERON:0001017!1.17e-19!82;UBERON:0001049!1.54e-18!57;UBERON:0005068!1.54e-18!57;UBERON:0006241!1.54e-18!57;UBERON:0007135!1.54e-18!57;UBERON:0005743!1.92e-18!86;UBERON:0002780!5.93e-17!41;UBERON:0001890!5.93e-17!41;UBERON:0006240!5.93e-17!41;UBERON:0000955!1.41e-16!69;UBERON:0006238!1.41e-16!69;UBERON:0003080!2.78e-16!42;UBERON:0000924!6.84e-14!173;UBERON:0006601!6.84e-14!173;UBERON:0002616!7.65e-14!59;UBERON:0001893!3.62e-13!34;UBERON:0002020!4.26e-13!34;UBERON:0003528!4.26e-13!34;UBERON:0004121!4.43e-13!169;UBERON:0002791!1.23e-12!33;UBERON:0001869!4.38e-12!32;UBERON:0002346!4.73e-12!90;UBERON:0003075!3.27e-11!86;UBERON:0007284!3.27e-11!86;UBERON:0000153!1.31e-10!129;UBERON:0007811!1.31e-10!129;UBERON:0000033!1.16e-09!123;UBERON:0002619!1.49e-09!22;UBERON:0001950!1.01e-08!20;UBERON:0000956!1.26e-08!25;UBERON:0000203!1.26e-08!25;UBERON:0003056!6.37e-08!61 | |ontology_enrichment_uberon=UBERON:0007023!8.33e-29!115;UBERON:0000073!5.19e-20!94;UBERON:0001016!5.19e-20!94;UBERON:0001017!1.17e-19!82;UBERON:0001049!1.54e-18!57;UBERON:0005068!1.54e-18!57;UBERON:0006241!1.54e-18!57;UBERON:0007135!1.54e-18!57;UBERON:0005743!1.92e-18!86;UBERON:0002780!5.93e-17!41;UBERON:0001890!5.93e-17!41;UBERON:0006240!5.93e-17!41;UBERON:0000955!1.41e-16!69;UBERON:0006238!1.41e-16!69;UBERON:0003080!2.78e-16!42;UBERON:0000924!6.84e-14!173;UBERON:0006601!6.84e-14!173;UBERON:0002616!7.65e-14!59;UBERON:0001893!3.62e-13!34;UBERON:0002020!4.26e-13!34;UBERON:0003528!4.26e-13!34;UBERON:0004121!4.43e-13!169;UBERON:0002791!1.23e-12!33;UBERON:0001869!4.38e-12!32;UBERON:0002346!4.73e-12!90;UBERON:0003075!3.27e-11!86;UBERON:0007284!3.27e-11!86;UBERON:0000153!1.31e-10!129;UBERON:0007811!1.31e-10!129;UBERON:0000033!1.16e-09!123;UBERON:0002619!1.49e-09!22;UBERON:0001950!1.01e-08!20;UBERON:0000956!1.26e-08!25;UBERON:0000203!1.26e-08!25;UBERON:0003056!6.37e-08!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.87e-12;41!UBERON:0001890;2.87e-12;41!UBERON:0001893;2.59e-11;34!UBERON:0003528;3.22e-11;34!UBERON:0002020;3.22e-11;34!UBERON:0000073;5.30e-11;53!UBERON:0002616;5.30e-11;53!UBERON:0001869;7.53e-11;32!UBERON:0002791;7.55e-11;32!UBERON:0002619;1.50e-09;22!UBERON:0001950;1.05e-08;20!UBERON:0000956;1.39e-08;25!UBERON:0000203;1.39e-08;25!UBERON:0001016;2.16e-08;83!UBERON:0001017;3.77e-08;75!UBERON:0007023;4.97e-08;114!UBERON:0000955;8.06e-08;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.54e-28,114;UBERON:0001016,1.16e-21,89;UBERON:0001017,4.00e-20,81;UBERON:0001049,3.96e-19,56;UBERON:0005068,3.96e-19,56;UBERON:0006241,3.96e-19,56;UBERON:0007135,3.96e-19,56;UBERON:0000073,5.16e-18,53;UBERON:0002616,5.16e-18,53;UBERON:0000955,4.84e-17,68;UBERON:0006238,4.84e-17,68;UBERON:0002780,5.93e-17,41;UBERON:0001890,5.93e-17,41;UBERON:0003080,5.93e-17,41;UBERON:0006240,5.93e-17,41;UBERON:0004121,3.55e-13,171;UBERON:0000924,3.55e-13,171;UBERON:0006601,3.55e-13,171;UBERON:0001893,3.62e-13,34;UBERON:0003528,4.26e-13,34;UBERON:0002020,4.26e-13,34;UBERON:0001869,4.38e-12,32;UBERON:0002791,4.60e-12,32;UBERON:0002346,2.66e-11,86;UBERON:0003075,1.79e-10,82;UBERON:0007284,1.79e-10,82;UBERON:0002619,1.49e-09,22;UBERON:0001950,1.01e-08,20;UBERON:0000956,1.26e-08,25;UBERON:0000203,1.26e-08,25;UBERON:0003056,1.58e-08,61;UBERON:0010371,1.62e-08,104;UBERON:0011216,3.42e-08,223 | |||
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| ||
|short_description=p1@RNF20 | |short_description=p1@RNF20 | ||
}} | }} |
Latest revision as of 22:06, 19 September 2015
Short description: | p1@RNF20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF20_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000389120, ENST00000478347, ENST00000488264, NM_019592, uc004bbn.2_5end |
EntrezGene: | RNF20 |
HGNC: | 10062 |
UniProt: | Q5VTR2C9K0V8C9JMW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.54e-28 | 114 |
nervous system | 1.16e-21 | 89 |
central nervous system | 4.00e-20 | 81 |
neural tube | 3.96e-19 | 56 |
neural rod | 3.96e-19 | 56 |
future spinal cord | 3.96e-19 | 56 |
neural keel | 3.96e-19 | 56 |
regional part of nervous system | 5.16e-18 | 53 |
regional part of brain | 5.16e-18 | 53 |
brain | 4.84e-17 | 68 |
future brain | 4.84e-17 | 68 |
regional part of forebrain | 5.93e-17 | 41 |
forebrain | 5.93e-17 | 41 |
anterior neural tube | 5.93e-17 | 41 |
future forebrain | 5.93e-17 | 41 |
ectoderm-derived structure | 3.55e-13 | 171 |
ectoderm | 3.55e-13 | 171 |
presumptive ectoderm | 3.55e-13 | 171 |
telencephalon | 3.62e-13 | 34 |
brain grey matter | 4.26e-13 | 34 |
gray matter | 4.26e-13 | 34 |
cerebral hemisphere | 4.38e-12 | 32 |
regional part of telencephalon | 4.60e-12 | 32 |
neurectoderm | 2.66e-11 | 86 |
neural plate | 1.79e-10 | 82 |
presumptive neural plate | 1.79e-10 | 82 |
regional part of cerebral cortex | 1.49e-09 | 22 |
neocortex | 1.01e-08 | 20 |
cerebral cortex | 1.26e-08 | 25 |
pallium | 1.26e-08 | 25 |
pre-chordal neural plate | 1.58e-08 | 61 |
ecto-epithelium | 1.62e-08 | 104 |
organ system subdivision | 3.42e-08 | 223 |