FFCP PHASE1:Hg19::chr6:83073553..83073601,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |EntrezGene=7162 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |HGNC=12004 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=190bp_to_uc010kbj.2_5end | |association_with_transcript=190bp_to_uc010kbj.2_5end | ||
|cluster_id=chr6:83073553..83073601,+ | |||
|coexpression_cluster_id=C1089 | |||
|description=CAGE_peak_2_at_TPBG_5end | |description=CAGE_peak_2_at_TPBG_5end | ||
|id=chr6:83073553..83073601,+ | |id=chr6:83073553..83073601,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.35e-27!180;CL:0000057!1.83e-18!75;CL:0000680!2.19e-13!57;CL:0000056!2.19e-13!57;CL:0000355!2.19e-13!57;CL:0000187!6.00e-13!54;CL:0000220!4.22e-12!246;CL:0002321!4.28e-12!248;CL:0000183!5.42e-12!59;CL:0000192!5.05e-11!42;CL:0000514!5.05e-11!42;CL:0000393!6.01e-11!60;CL:0000211!6.01e-11!60;CL:0000359!3.12e-09!32;CL:0000548!2.75e-08!679;CL:0000004!2.75e-08!679;CL:0000255!2.75e-08!679;CL:0000012!4.75e-08!682;CL:0002620!9.34e-08!23 | |ontology_enrichment_celltype=CL:0000055!1.35e-27!180;CL:0000057!1.83e-18!75;CL:0000680!2.19e-13!57;CL:0000056!2.19e-13!57;CL:0000355!2.19e-13!57;CL:0000187!6.00e-13!54;CL:0000220!4.22e-12!246;CL:0002321!4.28e-12!248;CL:0000183!5.42e-12!59;CL:0000192!5.05e-11!42;CL:0000514!5.05e-11!42;CL:0000393!6.01e-11!60;CL:0000211!6.01e-11!60;CL:0000359!3.12e-09!32;CL:0000548!2.75e-08!679;CL:0000004!2.75e-08!679;CL:0000255!2.75e-08!679;CL:0000012!4.75e-08!682;CL:0002620!9.34e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.02e-09;32!CL:0000134;7.25e-09;55!CL:0000192;2.38e-08;43!CL:0000723;7.71e-08;61!CL:0002620;9.93e-08;23!CL:0000057;1.13e-07;73!CL:0000048;1.51e-07;58!CL:0000187;3.13e-07;55!CL:0000034;6.47e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.10e-19,76;CL:0000680,1.87e-13,58;CL:0000056,1.87e-13,58;CL:0000355,1.87e-13,58;CL:0000187,5.22e-13,55;CL:0002321,1.64e-11,250;CL:0000192,4.82e-11,43;CL:0000514,4.82e-11,43;CL:0000393,5.11e-11,61;CL:0000211,5.11e-11,61;CL:0000359,2.44e-09,32;CL:0002620,1.08e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;2.38e-08;43!CL:0000355;1.85e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!1.05e-08!14 | |ontology_enrichment_disease=DOID:2394!1.05e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;9.37e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.34e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.46e-17!365;UBERON:0000486!6.07e-17!82;UBERON:0000914!4.60e-16!83;UBERON:0002329!4.60e-16!83;UBERON:0003077!4.60e-16!83;UBERON:0003059!4.60e-16!83;UBERON:0007282!4.60e-16!83;UBERON:0009618!4.60e-16!83;UBERON:0007285!4.60e-16!83;UBERON:0003102!9.97e-16!95;UBERON:0002100!1.32e-14!216;UBERON:0004290!5.16e-14!70;UBERON:0000468!1.13e-12!659;UBERON:0005256!1.75e-11!143;UBERON:0001134!1.95e-11!61;UBERON:0002036!1.95e-11!61;UBERON:0003082!1.95e-11!61;UBERON:0002385!4.06e-11!63;UBERON:0001015!4.06e-11!63;UBERON:0000383!4.06e-11!63;UBERON:0000481!2.55e-10!347;UBERON:0003104!5.09e-10!238;UBERON:0009142!5.09e-10!238;UBERON:0002199!4.49e-09!45;UBERON:0002416!4.49e-09!45;UBERON:0000467!6.70e-09!625;UBERON:0000480!8.72e-09!626;UBERON:0004573!2.49e-08!33;UBERON:0004571!2.49e-08!33;UBERON:0001637!2.92e-08!42;UBERON:0003509!2.92e-08!42;UBERON:0004572!2.92e-08!42;UBERON:0002097!4.20e-08!40;UBERON:0000119!1.03e-07!312;UBERON:0000483!1.43e-07!309;UBERON:0000922!1.92e-07!612;UBERON:0002050!3.99e-07!605;UBERON:0005423!3.99e-07!605;UBERON:0000923!4.86e-07!604;UBERON:0005291!4.86e-07!604;UBERON:0006598!4.86e-07!604;UBERON:0002532!4.86e-07!604 | |ontology_enrichment_uberon=UBERON:0000475!1.46e-17!365;UBERON:0000486!6.07e-17!82;UBERON:0000914!4.60e-16!83;UBERON:0002329!4.60e-16!83;UBERON:0003077!4.60e-16!83;UBERON:0003059!4.60e-16!83;UBERON:0007282!4.60e-16!83;UBERON:0009618!4.60e-16!83;UBERON:0007285!4.60e-16!83;UBERON:0003102!9.97e-16!95;UBERON:0002100!1.32e-14!216;UBERON:0004290!5.16e-14!70;UBERON:0000468!1.13e-12!659;UBERON:0005256!1.75e-11!143;UBERON:0001134!1.95e-11!61;UBERON:0002036!1.95e-11!61;UBERON:0003082!1.95e-11!61;UBERON:0002385!4.06e-11!63;UBERON:0001015!4.06e-11!63;UBERON:0000383!4.06e-11!63;UBERON:0000481!2.55e-10!347;UBERON:0003104!5.09e-10!238;UBERON:0009142!5.09e-10!238;UBERON:0002199!4.49e-09!45;UBERON:0002416!4.49e-09!45;UBERON:0000467!6.70e-09!625;UBERON:0000480!8.72e-09!626;UBERON:0004573!2.49e-08!33;UBERON:0004571!2.49e-08!33;UBERON:0001637!2.92e-08!42;UBERON:0003509!2.92e-08!42;UBERON:0004572!2.92e-08!42;UBERON:0002097!4.20e-08!40;UBERON:0000119!1.03e-07!312;UBERON:0000483!1.43e-07!309;UBERON:0000922!1.92e-07!612;UBERON:0002050!3.99e-07!605;UBERON:0005423!3.99e-07!605;UBERON:0000923!4.86e-07!604;UBERON:0005291!4.86e-07!604;UBERON:0006598!4.86e-07!604;UBERON:0002532!4.86e-07!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.79e-07;33!UBERON:0004571;1.79e-07;33!UBERON:0003102;8.22e-07;50 | |||
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| ||
|short_description=p2@TPBG | |short_description=p2@TPBG | ||
}} | }} |
Latest revision as of 23:33, 19 September 2015
Short description: | p2@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TPBG_5end |
Coexpression cluster: | C1089_Smooth_Small_Fibroblast_Prostate_anaplastic_mesenchymal_nasal |
Association with transcript: | 190bp_to_uc010kbj.2_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.10e-19 | 76 |
muscle precursor cell | 1.87e-13 | 58 |
myoblast | 1.87e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.87e-13 | 58 |
muscle cell | 5.22e-13 | 55 |
embryonic cell | 1.64e-11 | 250 |
smooth muscle cell | 4.82e-11 | 43 |
smooth muscle myoblast | 4.82e-11 | 43 |
electrically responsive cell | 5.11e-11 | 61 |
electrically active cell | 5.11e-11 | 61 |
vascular associated smooth muscle cell | 2.44e-09 | 32 |
skin fibroblast | 1.08e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 3.74e-17 | 83 |
surface structure | 8.11e-17 | 99 |
somite | 3.48e-14 | 71 |
presomitic mesoderm | 3.48e-14 | 71 |
presumptive segmental plate | 3.48e-14 | 71 |
dermomyotome | 3.48e-14 | 71 |
trunk paraxial mesoderm | 3.48e-14 | 71 |
dense mesenchyme tissue | 4.40e-14 | 73 |
paraxial mesoderm | 8.66e-14 | 72 |
presumptive paraxial mesoderm | 8.66e-14 | 72 |
epithelial vesicle | 1.88e-12 | 78 |
trunk | 2.03e-12 | 199 |
skeletal muscle tissue | 1.42e-11 | 62 |
striated muscle tissue | 1.42e-11 | 62 |
myotome | 1.42e-11 | 62 |
muscle tissue | 2.94e-11 | 64 |
musculature | 2.94e-11 | 64 |
musculature of body | 2.94e-11 | 64 |
trunk mesenchyme | 3.36e-10 | 122 |
integument | 2.14e-09 | 46 |
integumental system | 2.14e-09 | 46 |
mesenchyme | 5.40e-09 | 160 |
entire embryonic mesenchyme | 5.40e-09 | 160 |
skin of body | 2.07e-08 | 41 |
systemic artery | 3.18e-08 | 33 |
systemic arterial system | 3.18e-08 | 33 |
artery | 3.54e-08 | 42 |
arterial blood vessel | 3.54e-08 | 42 |
arterial system | 3.54e-08 | 42 |
cell layer | 1.91e-07 | 309 |
epithelium | 2.63e-07 | 306 |
organ component layer | 3.29e-07 | 66 |
unilaminar epithelium | 6.13e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.34e-09 | 14 |