FFCP PHASE1:Hg19::chr3:2140514..2140525,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152330 | |EntrezGene=152330 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2174 | |HGNC=2174 | ||
|TSSclassifier=strong | |||
|UniProt=C9JMQ2 | |UniProt=C9JMQ2 | ||
|association_with_transcript=17bp_to_ENST00000422330_5end | |association_with_transcript=17bp_to_ENST00000422330_5end | ||
|cluster_id=chr3:2140514..2140525,+ | |||
|coexpression_cluster_id=C4320 | |||
|description=CAGE_peak_7_at_CNTN4_5end | |description=CAGE_peak_7_at_CNTN4_5end | ||
|id=chr3:2140514..2140525,+ | |id=chr3:2140514..2140525,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.06e-38;3!UBERON:0007123;5.16e-11;5!UBERON:0006965;1.05e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;1.04e-13;1!DOID:4549;1.04e-13;1!DOID:5861;1.04e-13;1!DOID:6496;1.04e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.61e-13,1;DOID:4549,1.61e-13,1;DOID:5861,1.61e-13,1;DOID:6496,1.61e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.18e-45!115;UBERON:0002346!1.74e-24!90;UBERON:0001049!2.69e-24!57;UBERON:0005068!2.69e-24!57;UBERON:0006241!2.69e-24!57;UBERON:0007135!2.69e-24!57;UBERON:0000955!1.64e-23!69;UBERON:0006238!1.64e-23!69;UBERON:0003075!2.50e-23!86;UBERON:0007284!2.50e-23!86;UBERON:0002616!3.92e-23!59;UBERON:0000073!4.40e-22!94;UBERON:0001016!4.40e-22!94;UBERON:0002780!4.46e-22!41;UBERON:0001890!4.46e-22!41;UBERON:0006240!4.46e-22!41;UBERON:0003080!2.28e-21!42;UBERON:0001017!1.28e-20!82;UBERON:0005743!1.76e-20!86;UBERON:0000153!1.87e-19!129;UBERON:0007811!1.87e-19!129;UBERON:0001893!1.90e-19!34;UBERON:0001869!2.65e-19!32;UBERON:0003056!2.34e-18!61;UBERON:0002791!4.69e-18!33;UBERON:0002619!1.63e-17!22;UBERON:0001950!1.66e-17!20;UBERON:0002020!2.11e-17!34;UBERON:0003528!2.11e-17!34;UBERON:0000924!3.67e-17!173;UBERON:0006601!3.67e-17!173;UBERON:0000033!6.07e-17!123;UBERON:0004121!3.75e-16!169;UBERON:0000956!6.44e-15!25;UBERON:0000203!6.44e-15!25;UBERON:0000062!1.90e-10!511;UBERON:0000922!1.14e-09!612;UBERON:0000064!1.84e-09!219;UBERON:0001872!4.78e-09!5;UBERON:0002050!6.49e-09!605;UBERON:0005423!6.49e-09!605;UBERON:0000468!1.90e-08!659;UBERON:0000923!2.11e-08!604;UBERON:0005291!2.11e-08!604;UBERON:0006598!2.11e-08!604;UBERON:0002532!2.11e-08!604;UBERON:0000481!8.67e-08!347;UBERON:0000477!1.03e-07!286;UBERON:0000467!2.97e-07!625;UBERON:0000480!3.36e-07!626;UBERON:0004111!8.39e-07!241 | |ontology_enrichment_uberon=UBERON:0007023!4.18e-45!115;UBERON:0002346!1.74e-24!90;UBERON:0001049!2.69e-24!57;UBERON:0005068!2.69e-24!57;UBERON:0006241!2.69e-24!57;UBERON:0007135!2.69e-24!57;UBERON:0000955!1.64e-23!69;UBERON:0006238!1.64e-23!69;UBERON:0003075!2.50e-23!86;UBERON:0007284!2.50e-23!86;UBERON:0002616!3.92e-23!59;UBERON:0000073!4.40e-22!94;UBERON:0001016!4.40e-22!94;UBERON:0002780!4.46e-22!41;UBERON:0001890!4.46e-22!41;UBERON:0006240!4.46e-22!41;UBERON:0003080!2.28e-21!42;UBERON:0001017!1.28e-20!82;UBERON:0005743!1.76e-20!86;UBERON:0000153!1.87e-19!129;UBERON:0007811!1.87e-19!129;UBERON:0001893!1.90e-19!34;UBERON:0001869!2.65e-19!32;UBERON:0003056!2.34e-18!61;UBERON:0002791!4.69e-18!33;UBERON:0002619!1.63e-17!22;UBERON:0001950!1.66e-17!20;UBERON:0002020!2.11e-17!34;UBERON:0003528!2.11e-17!34;UBERON:0000924!3.67e-17!173;UBERON:0006601!3.67e-17!173;UBERON:0000033!6.07e-17!123;UBERON:0004121!3.75e-16!169;UBERON:0000956!6.44e-15!25;UBERON:0000203!6.44e-15!25;UBERON:0000062!1.90e-10!511;UBERON:0000922!1.14e-09!612;UBERON:0000064!1.84e-09!219;UBERON:0001872!4.78e-09!5;UBERON:0002050!6.49e-09!605;UBERON:0005423!6.49e-09!605;UBERON:0000468!1.90e-08!659;UBERON:0000923!2.11e-08!604;UBERON:0005291!2.11e-08!604;UBERON:0006598!2.11e-08!604;UBERON:0002532!2.11e-08!604;UBERON:0000481!8.67e-08!347;UBERON:0000477!1.03e-07!286;UBERON:0000467!2.97e-07!625;UBERON:0000480!3.36e-07!626;UBERON:0004111!8.39e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.20e-19;6!UBERON:0005795;1.04e-13;1!UBERON:0007190;1.04e-13;1!UBERON:0002680;3.89e-13;9!UBERON:0001895;3.89e-13;9!UBERON:0002046;5.16e-11;5!UBERON:0004733;5.38e-10;12!UBERON:0002028;5.38e-10;12!UBERON:0004732;2.87e-09;13!UBERON:0003127;1.70e-07;2!UBERON:0000341;1.70e-07;2!UBERON:0000007;1.70e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.71e-19,6;UBERON:0006215,1.71e-19,6;UBERON:0007190,1.25e-13,1;UBERON:0002680,3.30e-13,9;UBERON:0001895,3.30e-13,9;UBERON:0010092,3.30e-13,9;UBERON:0002046,6.47e-11,5;UBERON:0004117,6.47e-11,5;UBERON:0007689,6.47e-11,5;UBERON:0007123,6.47e-11,5;UBERON:0003091,6.47e-11,5;UBERON:0004733,4.76e-10,12;UBERON:0002028,4.76e-10,12;UBERON:0007277,4.76e-10,12;UBERON:0004732,2.57e-09,13;UBERON:0000955,3.44e-08,68;UBERON:0006238,3.44e-08,68;UBERON:0003076,3.83e-08,15;UBERON:0003057,3.83e-08,15;UBERON:0000073,5.11e-08,53;UBERON:0002616,5.11e-08,53;UBERON:0000007,1.28e-07,2;UBERON:0001049,1.41e-07,56;UBERON:0005068,1.41e-07,56;UBERON:0006241,1.41e-07,56;UBERON:0007135,1.41e-07,56;UBERON:0000341,1.75e-07,2;UBERON:0003127,1.99e-07,2;UBERON:0001017,8.29e-07,81 | |||
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|short_description=p7@CNTN4 | |short_description=p7@CNTN4 | ||
}} | }} |
Latest revision as of 18:39, 17 September 2015
Short description: | p7@CNTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CNTN4_5end |
Coexpression cluster: | C4320_cerebellum_occipital_aorta_parietal_rectum_extraskeletal_brain |
Association with transcript: | 17bp_to_ENST00000422330_5end |
EntrezGene: | CNTN4 |
HGNC: | 2174 |
UniProt: | C9JMQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.71e-19 | 6 |
rhombic lip | 1.71e-19 | 6 |
paracentral gyrus | 1.25e-13 | 1 |
regional part of metencephalon | 3.30e-13 | 9 |
metencephalon | 3.30e-13 | 9 |
future metencephalon | 3.30e-13 | 9 |
thyroid gland | 6.47e-11 | 5 |
pharyngeal pouch | 6.47e-11 | 5 |
thyroid diverticulum | 6.47e-11 | 5 |
pharyngeal pouch 2 | 6.47e-11 | 5 |
thyroid primordium | 6.47e-11 | 5 |
segmental subdivision of hindbrain | 4.76e-10 | 12 |
hindbrain | 4.76e-10 | 12 |
presumptive hindbrain | 4.76e-10 | 12 |
segmental subdivision of nervous system | 2.57e-09 | 13 |
brain | 3.44e-08 | 68 |
future brain | 3.44e-08 | 68 |
posterior neural tube | 3.83e-08 | 15 |
chordal neural plate | 3.83e-08 | 15 |
regional part of nervous system | 5.11e-08 | 53 |
regional part of brain | 5.11e-08 | 53 |
pituitary gland | 1.28e-07 | 2 |
neural tube | 1.41e-07 | 56 |
neural rod | 1.41e-07 | 56 |
future spinal cord | 1.41e-07 | 56 |
neural keel | 1.41e-07 | 56 |
throat | 1.75e-07 | 2 |
open tracheal system trachea | 1.99e-07 | 2 |
central nervous system | 8.29e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.61e-13 | 1 |
extraosseous chondrosarcoma | 1.61e-13 | 1 |
myxoid chondrosarcoma | 1.61e-13 | 1 |
extraskeletal myxoid chondrosarcoma | 1.61e-13 | 1 |