FFCP PHASE1:Hg19::chr11:28857896..28857921,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:28857896..28857921,- | |||
|description=CAGE_peak_at_chr11:28857896..28857921,- | |description=CAGE_peak_at_chr11:28857896..28857921,- | ||
|id=chr11:28857896..28857921,- | |id=chr11:28857896..28857921,- | ||
|ontology_enrichment_celltype=CL:0000222!3.56e-14!119;CL:0000055!5.63e-14!180;CL:0000057!3.82e-13!75;CL:0000144!4.62e-12!625;CL:0000077!2.46e-11!19;CL:0000548!2.93e-11!679;CL:0000004!2.93e-11!679;CL:0000255!2.93e-11!679;CL:0000012!4.62e-11!682;CL:0000220!6.58e-09!246;CL:0002321!1.03e-08!248;CL:0000003!1.44e-08!722;CL:0002620!1.68e-08!23;CL:0000213!1.72e-08!57;CL:0000215!1.72e-08!57;CL:0000359!2.63e-08!32;CL:0002371!7.26e-08!591;CL:0000192!4.19e-07!42;CL:0000514!4.19e-07!42;CL:0000680!7.03e-07!57;CL:0000056!7.03e-07!57;CL:0000355!7.03e-07!57 | |ontology_enrichment_celltype=CL:0000222!3.56e-14!119;CL:0000055!5.63e-14!180;CL:0000057!3.82e-13!75;CL:0000144!4.62e-12!625;CL:0000077!2.46e-11!19;CL:0000548!2.93e-11!679;CL:0000004!2.93e-11!679;CL:0000255!2.93e-11!679;CL:0000012!4.62e-11!682;CL:0000220!6.58e-09!246;CL:0002321!1.03e-08!248;CL:0000003!1.44e-08!722;CL:0002620!1.68e-08!23;CL:0000213!1.72e-08!57;CL:0000215!1.72e-08!57;CL:0000359!2.63e-08!32;CL:0002371!7.26e-08!591;CL:0000192!4.19e-07!42;CL:0000514!4.19e-07!42;CL:0000680!7.03e-07!57;CL:0000056!7.03e-07!57;CL:0000355!7.03e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000307;3.27e-21;3!CL:1000306;2.01e-16;4!CL:0002547;2.01e-16;4!CL:0002202;1.05e-07;9!CL:0002632;1.05e-07;9!CL:0002539;4.26e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,4.94e-21,3;CL:0000069,4.94e-21,3;CL:0000307,4.94e-21,3;CL:0000377,4.94e-21,3;CL:1000306,1.66e-16,4;CL:0002547,1.66e-16,4;CL:0002202,1.20e-07,9;CL:0002632,1.20e-07,9;CL:0002539,3.89e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000377;3.27e-21;3 | |||
|ontology_enrichment_disease=DOID:2394!2.88e-08!14 | |ontology_enrichment_disease=DOID:2394!2.88e-08!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.91e-09!118;UBERON:0001637!1.61e-08!42;UBERON:0003509!1.61e-08!42;UBERON:0004572!1.61e-08!42;UBERON:0002049!3.43e-08!79;UBERON:0007798!3.43e-08!79;UBERON:0001981!4.93e-08!60;UBERON:0007500!4.93e-08!60;UBERON:0004537!4.93e-08!60;UBERON:0006965!4.93e-08!60;UBERON:0005256!6.83e-08!143;UBERON:0004872!2.70e-07!84;UBERON:0000914!4.34e-07!83;UBERON:0002329!4.34e-07!83;UBERON:0003077!4.34e-07!83;UBERON:0003059!4.34e-07!83;UBERON:0007282!4.34e-07!83;UBERON:0009618!4.34e-07!83;UBERON:0007285!4.34e-07!83;UBERON:0000055!5.23e-07!69 | |ontology_enrichment_uberon=UBERON:0003914!1.91e-09!118;UBERON:0001637!1.61e-08!42;UBERON:0003509!1.61e-08!42;UBERON:0004572!1.61e-08!42;UBERON:0002049!3.43e-08!79;UBERON:0007798!3.43e-08!79;UBERON:0001981!4.93e-08!60;UBERON:0007500!4.93e-08!60;UBERON:0004537!4.93e-08!60;UBERON:0006965!4.93e-08!60;UBERON:0005256!6.83e-08!143;UBERON:0004872!2.70e-07!84;UBERON:0000914!4.34e-07!83;UBERON:0002329!4.34e-07!83;UBERON:0003077!4.34e-07!83;UBERON:0003059!4.34e-07!83;UBERON:0007282!4.34e-07!83;UBERON:0009618!4.34e-07!83;UBERON:0007285!4.34e-07!83;UBERON:0000055!5.23e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0004797;2.01e-16;4!UBERON:0000415;2.01e-16;4!UBERON:0007240;2.01e-16;4!UBERON:0005742;2.01e-16;4!UBERON:0005734;2.01e-16;4!UBERON:0004664;2.01e-16;4!UBERON:0004663;2.01e-16;4!UBERON:0001637;3.89e-12;42!UBERON:0003509;3.89e-12;42!UBERON:0004572;3.89e-12;42!UBERON:0000947;4.58e-12;21!UBERON:0010191;4.58e-12;21!UBERON:0003126;1.18e-09;7!UBERON:0001005;1.18e-09;7!UBERON:0004573;7.40e-08;33!UBERON:0004571;7.40e-08;33!UBERON:0007500;2.19e-07;56!UBERON:0001981;2.19e-07;56!UBERON:0004537;2.19e-07;56!UBERON:0004237;4.26e-07;10!UBERON:0004695;4.26e-07;10!UBERON:0002111;4.26e-07;10!UBERON:0004178;4.26e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.66e-16,4;UBERON:0007240,1.66e-16,4;UBERON:0005742,1.66e-16,4;UBERON:0005734,1.66e-16,4;UBERON:0004664,1.66e-16,4;UBERON:0004663,1.66e-16,4;UBERON:0001637,5.53e-13,42;UBERON:0003509,5.53e-13,42;UBERON:0004572,5.53e-13,42;UBERON:0000947,3.91e-12,21;UBERON:0010191,3.91e-12,21;UBERON:0004797,7.64e-10,7;UBERON:0003126,1.41e-09,7;UBERON:0001005,1.41e-09,7;UBERON:0007500,3.59e-09,59;UBERON:0001981,3.59e-09,59;UBERON:0004537,3.59e-09,59;UBERON:0006965,3.59e-09,59;UBERON:0004872,1.32e-08,83;UBERON:0000055,6.41e-08,68;UBERON:0004573,8.17e-08,33;UBERON:0004571,8.17e-08,33;UBERON:0003914,9.33e-08,117;UBERON:0004237,3.89e-07,10;UBERON:0004695,3.89e-07,10;UBERON:0002111,3.89e-07,10;UBERON:0004178,3.89e-07,10;UBERON:0002049,7.28e-07,78;UBERON:0007798,7.28e-07,78 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0.491467873003018,2.79120467188971,0,0,0,0,0,0,2.19093027116212,0.975865597581014,0.246242116153576,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,1.25396979922086,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,4.36950296683622,1.43418310374407,0,1.12135520028461,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0.149448680551801,0,0.161872944368132,0,0.408308342509787,0.122834317311768,0,0,0.247266929278557,0,0,0.336672227908132,0,0,0,0.919463387397059,0.150238058906597,0.113432183160021,1.79389635688862,0,0,0.300091096084402,0.309157587715317,0.257640540045629,0,0.168776332241266,0.292311015483596,1.26216887122057,0.276149695926898,0,0.355009592516614,0.302256294682921,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0.553107505625109,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,0,0.34444334449382,0.546273504020151,0.131124414959424,0.451199612907412,0.231046011313244,0,0,0.211103257785751,0,0,0.431831832204279,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0,0,0.255225424989168,0,0,1.5740617341532,0.6970372701606,0.308033580176089,0,0,0.37064843820784,0.715624433709956,0.372158369359667,0,0,0.255897791311334,0,0.95460974377781,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811641507850816,0.92947049429925,0,0.286822704408103,0.0982490410131212,1.426684205925,0,0,0,0.379473173765715,0.699869440489966,0,1.34060455107157,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,0,0,0.0730893170861856,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0.15543720058278,0.887130899937803,0,0.449803112163605,0.310525913752519,0,0.53168342911599,0,0.450772826991655,0.380805212168795,0.406870733204662,0.545545977607678,0,0.464033759878494,0.398095888698616,0,0,0,0,0,0,0.521988583930423,0.226705925512272,0.231522474323834,0.244736704506468,0.537266523244462,0.617602894321944,0.219284049578707,0.706756583783524,1.15748422962549,0.337884881306145,0,0.345430341731199,0.303859956177382,0,0,0,0,0,0.245772908753719,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0.491467873003018,2.79120467188971,0,0,0,0,0,0,2.19093027116212,0.975865597581014,0.246242116153576,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,1.25396979922086,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,4.36950296683622,1.43418310374407,0,1.12135520028461,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0.149448680551801,0,0.161872944368132,0,0.408308342509787,0.122834317311768,0,0,0.247266929278557,0,0,0.336672227908132,0,0,0,0.919463387397059,0.150238058906597,0.113432183160021,1.79389635688862,0,0,0.300091096084402,0.309157587715317,0.257640540045629,0,0.168776332241266,0.292311015483596,1.26216887122057,0.276149695926898,0,0.355009592516614,0.302256294682921,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0.553107505625109,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,0,0.34444334449382,0.546273504020151,0.131124414959424,0.451199612907412,0.231046011313244,0,0,0.211103257785751,0,0,0.431831832204279,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0,0,0.255225424989168,0,0,1.5740617341532,0.6970372701606,0.308033580176089,0,0,0.37064843820784,0.715624433709956,0.372158369359667,0,0,0.255897791311334,0,0.95460974377781,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811641507850816,0.92947049429925,0,0.286822704408103,0.0982490410131212,1.426684205925,0,0,0,0.379473173765715,0.699869440489966,0,1.34060455107157,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,0,0,0.0730893170861856,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0.15543720058278,0.887130899937803,0,0.449803112163605,0.310525913752519,0,0.53168342911599,0,0.450772826991655,0.380805212168795,0.406870733204662,0.545545977607678,0,0.464033759878494,0.398095888698616,0,0,0,0,0,0,0.521988583930423,0.226705925512272,0.231522474323834,0.244736704506468,0.537266523244462,0.617602894321944,0.219284049578707,0.706756583783524,1.15748422962549,0.337884881306145,0,0.345430341731199,0.303859956177382,0,0,0,0,0,0.245772908753719,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:28857896..28857921,- | |short_description=p@chr11:28857896..28857921,- | ||
}} | }} |
Latest revision as of 21:21, 23 July 2015
Short description: | p@chr11:28857896..28857921, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:28857896..28857921, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 4.94e-21 | 3 |
branched duct epithelial cell | 4.94e-21 | 3 |
tracheal epithelial cell | 4.94e-21 | 3 |
tracheoblast | 4.94e-21 | 3 |
fibroblast of tunica adventitia of artery | 1.66e-16 | 4 |
fibroblast of the aortic adventitia | 1.66e-16 | 4 |
epithelial cell of tracheobronchial tree | 1.20e-07 | 9 |
epithelial cell of lower respiratory tract | 1.20e-07 | 9 |
aortic smooth muscle cell | 3.89e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
artery wall | 1.66e-16 | 4 |
tunica adventitia of artery | 1.66e-16 | 4 |
adventitia | 1.66e-16 | 4 |
tunica adventitia of blood vessel | 1.66e-16 | 4 |
aorta tunica adventitia | 1.66e-16 | 4 |
aorta wall | 1.66e-16 | 4 |
artery | 5.53e-13 | 42 |
arterial blood vessel | 5.53e-13 | 42 |
arterial system | 5.53e-13 | 42 |
aorta | 3.91e-12 | 21 |
aortic system | 3.91e-12 | 21 |
blood vessel layer | 7.64e-10 | 7 |
trachea | 1.41e-09 | 7 |
respiratory airway | 1.41e-09 | 7 |
epithelial tube open at both ends | 3.59e-09 | 59 |
blood vessel | 3.59e-09 | 59 |
blood vasculature | 3.59e-09 | 59 |
vascular cord | 3.59e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 1.32e-08 | 83 |
vessel | 6.41e-08 | 68 |
systemic artery | 8.17e-08 | 33 |
systemic arterial system | 8.17e-08 | 33 |
epithelial tube | 9.33e-08 | 117 |
blood vessel smooth muscle | 3.89e-07 | 10 |
arterial system smooth muscle | 3.89e-07 | 10 |
artery smooth muscle tissue | 3.89e-07 | 10 |
aorta smooth muscle tissue | 3.89e-07 | 10 |
vasculature | 7.28e-07 | 78 |
vascular system | 7.28e-07 | 78 |