FFCP PHASE1:Hg19::chr17:56595196..56595259,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:56595196..56595259,-
|short_description=p1@MTMR4
|description=CAGE_peak_1_at_MTMR4_5end
|association_with_transcript=0bp_to_ENST00000323456,NM_004687,uc00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9110 | |EntrezGene=9110 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7452 | |HGNC=7452 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NYA4 | |UniProt=Q9NYA4 | ||
|association_with_transcript=0bp_to_ENST00000323456,NM_004687,uc002iwj.2_5end | |||
|cluster_id=chr17:56595196..56595259,- | |||
|description=CAGE_peak_1_at_MTMR4_5end | |||
|id=chr17:56595196..56595259,- | |||
|ontology_enrichment_celltype=CL:0000838!5.10e-11!52;CL:0000542!5.16e-11!53;CL:0000051!5.16e-11!53;CL:0000738!3.16e-10!140;CL:0000037!1.42e-09!172;CL:0000566!1.42e-09!172;CL:0002032!5.05e-09!165;CL:0000837!5.05e-09!165;CL:0000945!1.03e-08!24;CL:0000826!1.03e-08!24;CL:0000988!1.40e-08!182;CL:0000236!2.59e-07!14;CL:0002031!5.38e-07!124;CL:0002087!7.71e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.58e-08;24!CL:0000236;1.20e-07;13!CL:0000542;6.52e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.41e-11,136;CL:0000838,5.08e-11,52;CL:0000542,5.13e-11,53;CL:0000051,5.13e-11,53;CL:0000037,2.16e-10,168;CL:0002032,7.93e-10,161;CL:0000837,7.93e-10,161;CL:0000988,1.54e-09,177;CL:0000945,1.03e-08,24;CL:0000826,1.03e-08,24;CL:0002031,8.57e-08,120;CL:0002087,1.21e-07,115;CL:0000236,2.58e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.46e-07;82!CL:0000051;6.52e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.36e-34!115;UBERON:0001049!9.52e-20!57;UBERON:0005068!9.52e-20!57;UBERON:0006241!9.52e-20!57;UBERON:0007135!9.52e-20!57;UBERON:0003080!8.93e-17!42;UBERON:0002780!1.01e-16!41;UBERON:0001890!1.01e-16!41;UBERON:0006240!1.01e-16!41;UBERON:0000073!2.65e-16!94;UBERON:0001016!2.65e-16!94;UBERON:0000955!4.71e-16!69;UBERON:0006238!4.71e-16!69;UBERON:0001017!1.14e-15!82;UBERON:0002616!1.19e-15!59;UBERON:0005743!8.33e-15!86;UBERON:0001893!1.22e-14!34;UBERON:0002791!4.07e-14!33;UBERON:0002020!5.08e-14!34;UBERON:0003528!5.08e-14!34;UBERON:0001869!2.23e-13!32;UBERON:0002619!1.54e-11!22;UBERON:0001950!1.24e-10!20;UBERON:0000956!5.92e-10!25;UBERON:0000203!5.92e-10!25;UBERON:0002346!1.05e-09!90;UBERON:0003075!1.97e-09!86;UBERON:0007284!1.97e-09!86;UBERON:0003056!1.21e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.16e-12;41!UBERON:0001890;1.16e-12;41!UBERON:0001893;2.14e-12;34!UBERON:0002791;4.22e-12;32!UBERON:0001869;5.73e-12;32!UBERON:0003528;6.27e-12;34!UBERON:0002020;6.27e-12;34!UBERON:0002619;1.14e-11;22!UBERON:0000073;1.73e-11;53!UBERON:0002616;1.73e-11;53!UBERON:0001950;9.56e-11;20!UBERON:0000956;5.04e-10;25!UBERON:0000203;5.04e-10;25!UBERON:0007023;5.34e-10;114!UBERON:0001017;6.94e-08;75!UBERON:0000955;8.79e-08;68!UBERON:0001016;1.44e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.38e-34,114;UBERON:0001049,1.13e-19,56;UBERON:0005068,1.13e-19,56;UBERON:0006241,1.13e-19,56;UBERON:0007135,1.13e-19,56;UBERON:0000073,2.01e-18,53;UBERON:0002616,2.01e-18,53;UBERON:0001016,4.85e-17,89;UBERON:0002780,1.00e-16,41;UBERON:0001890,1.00e-16,41;UBERON:0003080,1.00e-16,41;UBERON:0006240,1.00e-16,41;UBERON:0000955,6.09e-16,68;UBERON:0006238,6.09e-16,68;UBERON:0001017,1.50e-15,81;UBERON:0001893,1.22e-14,34;UBERON:0003528,5.06e-14,34;UBERON:0002020,5.06e-14,34;UBERON:0002791,1.76e-13,32;UBERON:0001869,2.22e-13,32;UBERON:0002619,1.54e-11,22;UBERON:0001950,1.24e-10,20;UBERON:0002346,1.92e-10,86;UBERON:0003075,3.54e-10,82;UBERON:0007284,3.54e-10,82;UBERON:0000956,5.90e-10,25;UBERON:0000203,5.90e-10,25;UBERON:0003056,5.48e-08,61;UBERON:0011216,9.25e-07,223 | |||
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| ||
|short_description=p1@MTMR4 | |||
}} | }} |
Latest revision as of 11:40, 16 September 2015
Short description: | p1@MTMR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MTMR4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000323456, NM_004687, uc002iwj.2_5end |
EntrezGene: | MTMR4 |
HGNC: | 7452 |
UniProt: | Q9NYA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.41e-11 | 136 |
lymphoid lineage restricted progenitor cell | 5.08e-11 | 52 |
lymphocyte | 5.13e-11 | 53 |
common lymphoid progenitor | 5.13e-11 | 53 |
hematopoietic stem cell | 2.16e-10 | 168 |
hematopoietic oligopotent progenitor cell | 7.93e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.93e-10 | 161 |
hematopoietic cell | 1.54e-09 | 177 |
lymphocyte of B lineage | 1.03e-08 | 24 |
pro-B cell | 1.03e-08 | 24 |
hematopoietic lineage restricted progenitor cell | 8.57e-08 | 120 |
nongranular leukocyte | 1.21e-07 | 115 |
B cell | 2.58e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.38e-34 | 114 |
neural tube | 1.13e-19 | 56 |
neural rod | 1.13e-19 | 56 |
future spinal cord | 1.13e-19 | 56 |
neural keel | 1.13e-19 | 56 |
regional part of nervous system | 2.01e-18 | 53 |
regional part of brain | 2.01e-18 | 53 |
nervous system | 4.85e-17 | 89 |
regional part of forebrain | 1.00e-16 | 41 |
forebrain | 1.00e-16 | 41 |
anterior neural tube | 1.00e-16 | 41 |
future forebrain | 1.00e-16 | 41 |
brain | 6.09e-16 | 68 |
future brain | 6.09e-16 | 68 |
central nervous system | 1.50e-15 | 81 |
telencephalon | 1.22e-14 | 34 |
brain grey matter | 5.06e-14 | 34 |
gray matter | 5.06e-14 | 34 |
regional part of telencephalon | 1.76e-13 | 32 |
cerebral hemisphere | 2.22e-13 | 32 |
regional part of cerebral cortex | 1.54e-11 | 22 |
neocortex | 1.24e-10 | 20 |
neurectoderm | 1.92e-10 | 86 |
neural plate | 3.54e-10 | 82 |
presumptive neural plate | 3.54e-10 | 82 |
cerebral cortex | 5.90e-10 | 25 |
pallium | 5.90e-10 | 25 |
pre-chordal neural plate | 5.48e-08 | 61 |
organ system subdivision | 9.25e-07 | 223 |