FFCP PHASE1:Hg19::chr12:6485300..6485325,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6337 | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |HGNC=10599 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-106bp_to_ENST00000536411_5end | |association_with_transcript=-106bp_to_ENST00000536411_5end | ||
|cluster_id=chr12:6485300..6485325,- | |||
|coexpression_cluster_id=C2229 | |coexpression_cluster_id=C2229 | ||
|description=CAGE_peak_5_at_SCNN1A_5end | |description=CAGE_peak_5_at_SCNN1A_5end | ||
|id=chr12:6485300..6485325,- | |id=chr12:6485300..6485325,- | ||
|ontology_enrichment_celltype=CL:0000066!3.30e-29!254;CL:0000223!6.36e-16!59;CL:0002076!3.11e-15!43;CL:0002368!7.50e-10!13;CL:1000507!4.79e-08!12;CL:1000494!4.79e-08!12 | |ontology_enrichment_celltype=CL:0000066!3.30e-29!254;CL:0000223!6.36e-16!59;CL:0002076!3.11e-15!43;CL:0002368!7.50e-10!13;CL:1000507!4.79e-08!12;CL:1000494!4.79e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:1000507;2.16e-15;10!CL:1000494;2.16e-15;10!CL:1000449;2.04e-12;15!CL:1000497;1.01e-10;17!CL:0002518;1.01e-10;17!CL:0002368;1.01e-10;13!CL:0002681;8.31e-10;12!CL:0002584;8.31e-10;12!CL:0002076;1.44e-09;42!CL:0002577;9.84e-09;3!CL:0000239;1.53e-08;3!CL:1000615;1.53e-08;3!CL:0002306;1.53e-08;3!CL:0000349;3.66e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.80e-19,253;CL:1000507,2.17e-15,10;CL:1000494,2.17e-15,10;CL:1000449,2.03e-12,15;CL:0002076,2.86e-12,42;CL:0002368,9.34e-11,13;CL:1000497,1.00e-10,17;CL:0002518,1.00e-10,17;CL:0000223,6.34e-10,58;CL:0002681,8.72e-10,12;CL:0002584,8.72e-10,12;CL:0002577,8.40e-09,3;CL:0000239,1.87e-08,3;CL:1000615,1.87e-08,3;CL:0002306,1.87e-08,3;CL:0000349,2.24e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.83e-08;10!UBERON:0005564;4.83e-08;10 | |||
|ontology_enrichment_disease=DOID:305!5.82e-19!106;DOID:0050687!2.63e-12!143;DOID:1749!1.37e-07!14 | |ontology_enrichment_disease=DOID:305!5.82e-19!106;DOID:0050687!2.63e-12!143;DOID:1749!1.37e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!9.37e-20!169;UBERON:0000925!9.37e-20!169;UBERON:0006595!9.37e-20!169;UBERON:0000466!7.71e-19!126;UBERON:0000464!7.27e-18!104;UBERON:0005177!2.73e-17!107;UBERON:0000077!6.19e-17!130;UBERON:0004921!6.91e-15!129;UBERON:0004185!6.91e-15!129;UBERON:0001007!3.44e-14!155;UBERON:0001555!3.44e-14!155;UBERON:0007026!3.44e-14!155;UBERON:0006554!5.51e-14!44;UBERON:0005911!1.24e-13!82;UBERON:0001008!1.97e-13!45;UBERON:0001041!5.32e-13!98;UBERON:0005153!1.54e-12!37;UBERON:0001004!2.65e-12!72;UBERON:0000065!1.12e-11!53;UBERON:0005178!6.33e-11!34;UBERON:0002224!6.33e-11!34;UBERON:0003104!1.07e-10!238;UBERON:0009142!1.07e-10!238;UBERON:0008947!1.16e-10!38;UBERON:0003258!1.16e-10!38;UBERON:0005181!2.21e-10!35;UBERON:0001048!4.02e-10!168;UBERON:0009569!5.16e-10!113;UBERON:0000481!5.79e-10!347;UBERON:0000489!1.50e-09!32;UBERON:0000058!2.66e-09!26;UBERON:0003101!3.00e-09!22;UBERON:0000079!3.00e-09!22;UBERON:0002113!3.68e-09!27;UBERON:0003918!3.68e-09!27;UBERON:0005095!3.68e-09!27;UBERON:0007687!3.68e-09!27;UBERON:0002553!1.07e-08!70;UBERON:0005157!1.19e-08!51;UBERON:0002048!1.27e-08!22;UBERON:0000117!1.27e-08!22;UBERON:0000171!1.27e-08!22;UBERON:0000170!1.27e-08!22;UBERON:0005597!1.27e-08!22;UBERON:0000118!1.27e-08!22;UBERON:0003064!2.03e-08!37;UBERON:0000080!2.94e-08!18;UBERON:0002120!2.94e-08!18;UBERON:0004875!2.94e-08!18;UBERON:0005721!2.94e-08!18;UBERON:0005754!2.94e-08!18;UBERON:0007297!2.94e-08!18;UBERON:0000062!3.08e-08!511;UBERON:0000922!3.17e-08!612;UBERON:0009773!4.79e-08!12;UBERON:0001231!4.79e-08!12;UBERON:0004810!4.79e-08!12;UBERON:0005156!7.54e-08!59;UBERON:0000990!7.54e-08!59;UBERON:0000072!1.56e-07!46;UBERON:0003135!1.77e-07!11;UBERON:0006555!1.82e-07!17;UBERON:0005103!1.82e-07!17;UBERON:0000083!1.82e-07!17;UBERON:0009201!1.82e-07!17;UBERON:0004819!1.82e-07!17;UBERON:0006553!1.82e-07!17;UBERON:0003074!1.82e-07!17;UBERON:0003060!1.82e-07!17;UBERON:0007196!5.19e-07!14;UBERON:0001558!5.19e-07!14;UBERON:0004876!5.36e-07!20 | |ontology_enrichment_uberon=UBERON:0004119!9.37e-20!169;UBERON:0000925!9.37e-20!169;UBERON:0006595!9.37e-20!169;UBERON:0000466!7.71e-19!126;UBERON:0000464!7.27e-18!104;UBERON:0005177!2.73e-17!107;UBERON:0000077!6.19e-17!130;UBERON:0004921!6.91e-15!129;UBERON:0004185!6.91e-15!129;UBERON:0001007!3.44e-14!155;UBERON:0001555!3.44e-14!155;UBERON:0007026!3.44e-14!155;UBERON:0006554!5.51e-14!44;UBERON:0005911!1.24e-13!82;UBERON:0001008!1.97e-13!45;UBERON:0001041!5.32e-13!98;UBERON:0005153!1.54e-12!37;UBERON:0001004!2.65e-12!72;UBERON:0000065!1.12e-11!53;UBERON:0005178!6.33e-11!34;UBERON:0002224!6.33e-11!34;UBERON:0003104!1.07e-10!238;UBERON:0009142!1.07e-10!238;UBERON:0008947!1.16e-10!38;UBERON:0003258!1.16e-10!38;UBERON:0005181!2.21e-10!35;UBERON:0001048!4.02e-10!168;UBERON:0009569!5.16e-10!113;UBERON:0000481!5.79e-10!347;UBERON:0000489!1.50e-09!32;UBERON:0000058!2.66e-09!26;UBERON:0003101!3.00e-09!22;UBERON:0000079!3.00e-09!22;UBERON:0002113!3.68e-09!27;UBERON:0003918!3.68e-09!27;UBERON:0005095!3.68e-09!27;UBERON:0007687!3.68e-09!27;UBERON:0002553!1.07e-08!70;UBERON:0005157!1.19e-08!51;UBERON:0002048!1.27e-08!22;UBERON:0000117!1.27e-08!22;UBERON:0000171!1.27e-08!22;UBERON:0000170!1.27e-08!22;UBERON:0005597!1.27e-08!22;UBERON:0000118!1.27e-08!22;UBERON:0003064!2.03e-08!37;UBERON:0000080!2.94e-08!18;UBERON:0002120!2.94e-08!18;UBERON:0004875!2.94e-08!18;UBERON:0005721!2.94e-08!18;UBERON:0005754!2.94e-08!18;UBERON:0007297!2.94e-08!18;UBERON:0000062!3.08e-08!511;UBERON:0000922!3.17e-08!612;UBERON:0009773!4.79e-08!12;UBERON:0001231!4.79e-08!12;UBERON:0004810!4.79e-08!12;UBERON:0005156!7.54e-08!59;UBERON:0000990!7.54e-08!59;UBERON:0000072!1.56e-07!46;UBERON:0003135!1.77e-07!11;UBERON:0006555!1.82e-07!17;UBERON:0005103!1.82e-07!17;UBERON:0000083!1.82e-07!17;UBERON:0009201!1.82e-07!17;UBERON:0004819!1.82e-07!17;UBERON:0006553!1.82e-07!17;UBERON:0003074!1.82e-07!17;UBERON:0003060!1.82e-07!17;UBERON:0007196!5.19e-07!14;UBERON:0001558!5.19e-07!14;UBERON:0004876!5.36e-07!20 | ||
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| ||
|short_description=p5@SCNN1A | |short_description=p5@SCNN1A | ||
}} | }} |
Latest revision as of 20:55, 19 September 2015
Short description: | p5@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCNN1A_5end |
Coexpression cluster: | C2229_Amniotic_Placental_lung_thyroid_kidney_Small_testicular |
Association with transcript: | -106bp_to_ENST00000536411_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.80e-19 | 253 |
kidney tubule cell | 2.17e-15 | 10 |
nephron tubule epithelial cell | 2.17e-15 | 10 |
epithelial cell of nephron | 2.03e-12 | 15 |
endo-epithelial cell | 2.86e-12 | 42 |
respiratory epithelial cell | 9.34e-11 | 13 |
kidney cell | 1.00e-10 | 17 |
kidney epithelial cell | 1.00e-10 | 17 |
endodermal cell | 6.34e-10 | 58 |
kidney cortical cell | 8.72e-10 | 12 |
renal cortical epithelial cell | 8.72e-10 | 12 |
placental epithelial cell | 8.40e-09 | 3 |
brush border epithelial cell | 1.87e-08 | 3 |
kidney cortex tubule cell | 1.87e-08 | 3 |
epithelial cell of proximal tubule | 1.87e-08 | 3 |
extraembryonic cell | 2.24e-07 | 19 |