FFCP PHASE1:Hg19::chr13:23420072..23420076,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:23420072..23420076,+ | |||
|coexpression_cluster_id=C3358 | |coexpression_cluster_id=C3358 | ||
|description=CAGE_peak_at_chr13:23420072..23420076,+ | |description=CAGE_peak_at_chr13:23420072..23420076,+ | ||
|id=chr13:23420072..23420076,+ | |id=chr13:23420072..23420076,+ | ||
|ontology_enrichment_celltype=CL:0000153!2.05e-08!9;CL:0000447!2.05e-08!9;CL:0000214!7.28e-07!3;CL:0002178!8.62e-07!3 | |ontology_enrichment_celltype=CL:0000153!2.05e-08!9;CL:0000447!2.05e-08!9;CL:0000214!7.28e-07!3;CL:0002178!8.62e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000138;2.59e-12;6!CL:0000153;1.16e-08;9!CL:0000447;1.16e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.45e-12,6;CL:0000138,2.45e-12,6;CL:0000153,1.12e-08,9;CL:0000447,1.12e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.34e-66;1!UBERON:0003056;3.66e-23;3 | |||
|ontology_enrichment_disease=DOID:3371!3.16e-18!1;DOID:4549!3.16e-18!1;DOID:5861!3.16e-18!1;DOID:6496!3.16e-18!1;DOID:3119!2.20e-11!14;DOID:4929!1.03e-09!2;DOID:3493!1.44e-09!2 | |ontology_enrichment_disease=DOID:3371!3.16e-18!1;DOID:4549!3.16e-18!1;DOID:5861!3.16e-18!1;DOID:6496!3.16e-18!1;DOID:3119!2.20e-11!14;DOID:4929!1.03e-09!2;DOID:3493!1.44e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:3371;3.34e-66;1!DOID:4549;3.34e-66;1!DOID:5861;3.34e-66;1!DOID:6496;3.34e-66;1!DOID:201;2.59e-12;6!DOID:0060100;2.59e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.39e-66,1;DOID:4549,2.39e-66,1;DOID:5861,2.39e-66,1;DOID:6496,2.39e-66,1;DOID:201,2.45e-12,6;DOID:0060100,2.45e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0000941!3.75e-18!1;UBERON:0004904!3.75e-18!1;UBERON:0002464!3.75e-18!1;UBERON:0001021!3.75e-18!1;UBERON:0001785!3.75e-18!1;UBERON:0004913!4.44e-18!1;UBERON:0003703!4.44e-18!1;UBERON:0001174!4.44e-18!1;UBERON:0004914!4.44e-18!1;UBERON:0003714!9.46e-10!2;UBERON:0005162!9.46e-10!2;UBERON:0000122!9.46e-10!2;UBERON:0000945!2.55e-09!8;UBERON:0010039!2.55e-09!8;UBERON:0000010!2.46e-08!8;UBERON:0002418!6.14e-07!3;UBERON:0004755!6.14e-07!3;UBERON:0006915!7.28e-07!3;UBERON:0002018!7.28e-07!3;UBERON:0002217!7.28e-07!3;UBERON:0007616!7.28e-07!3;UBERON:0002240!7.70e-07!3 | |ontology_enrichment_uberon=UBERON:0000941!3.75e-18!1;UBERON:0004904!3.75e-18!1;UBERON:0002464!3.75e-18!1;UBERON:0001021!3.75e-18!1;UBERON:0001785!3.75e-18!1;UBERON:0004913!4.44e-18!1;UBERON:0003703!4.44e-18!1;UBERON:0001174!4.44e-18!1;UBERON:0004914!4.44e-18!1;UBERON:0003714!9.46e-10!2;UBERON:0005162!9.46e-10!2;UBERON:0000122!9.46e-10!2;UBERON:0000945!2.55e-09!8;UBERON:0010039!2.55e-09!8;UBERON:0000010!2.46e-08!8;UBERON:0002418!6.14e-07!3;UBERON:0004755!6.14e-07!3;UBERON:0006915!7.28e-07!3;UBERON:0002018!7.28e-07!3;UBERON:0002217!7.28e-07!3;UBERON:0007616!7.28e-07!3;UBERON:0002240!7.70e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.34e-66;1!UBERON:0001785;3.34e-66;1!UBERON:0002464;3.34e-66;1!UBERON:0004904;3.34e-66;1!UBERON:0001021;3.34e-66;1!UBERON:0003714;5.96e-34;2!UBERON:0005162;5.96e-34;2!UBERON:0000122;5.96e-34;2!UBERON:0002418;3.66e-23;3!UBERON:0004755;3.66e-23;3!UBERON:0000945;1.40e-14;5!UBERON:0010039;1.40e-14;5!UBERON:0000010;1.16e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,4.66e-66,1;UBERON:0001785,4.66e-66,1;UBERON:0002464,4.66e-66,1;UBERON:0004904,4.66e-66,1;UBERON:0001021,4.66e-66,1;UBERON:0003902,4.66e-66,1;UBERON:0005425,4.66e-66,1;UBERON:0003714,7.05e-34,2;UBERON:0005162,7.05e-34,2;UBERON:0000122,7.05e-34,2;UBERON:0002418,3.27e-23,3;UBERON:0004755,3.27e-23,3;UBERON:0001781,1.03e-17,4;UBERON:0000966,2.74e-12,6;UBERON:0005388,2.74e-12,6;UBERON:0001802,2.74e-12,6;UBERON:0000945,1.24e-09,8;UBERON:0010039,1.24e-09,8;UBERON:0000010,1.21e-08,8 | |||
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|short_description=p@chr13:23420072..23420076,+ | |short_description=p@chr13:23420072..23420076,+ | ||
}} | }} |
Latest revision as of 15:05, 24 July 2015
Short description: | p@chr13:23420072..23420076, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:23420072..23420076, + |
Coexpression cluster: | C3358_gastric_extraskeletal_optic_papillotubular_Synoviocyte_signet_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.45e-12 | 6 |
chondrocyte | 2.45e-12 | 6 |
GAG secreting cell | 1.12e-08 | 9 |
carbohydrate secreting cell | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 4.66e-66 | 1 |
cranial nerve | 4.66e-66 | 1 |
nerve trunk | 4.66e-66 | 1 |
nerve connecting eye with brain | 4.66e-66 | 1 |
nerve | 4.66e-66 | 1 |
retinal neural layer | 4.66e-66 | 1 |
presumptive neural retina | 4.66e-66 | 1 |
neural tissue | 7.05e-34 | 2 |
multi cell component structure | 7.05e-34 | 2 |
neuron projection bundle | 7.05e-34 | 2 |
cartilage tissue | 3.27e-23 | 3 |
skeletal tissue | 3.27e-23 | 3 |
layer of retina | 1.03e-17 | 4 |
retina | 2.74e-12 | 6 |
photoreceptor array | 2.74e-12 | 6 |
posterior segment of eyeball | 2.74e-12 | 6 |
stomach | 1.24e-09 | 8 |
food storage organ | 1.24e-09 | 8 |
peripheral nervous system | 1.21e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.39e-66 | 1 |
extraosseous chondrosarcoma | 2.39e-66 | 1 |
myxoid chondrosarcoma | 2.39e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 2.39e-66 | 1 |
connective tissue cancer | 2.45e-12 | 6 |
musculoskeletal system cancer | 2.45e-12 | 6 |