FFCP PHASE1:Hg19::chr17:47572647..47572662,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4804 | |EntrezGene=4804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7809 | |HGNC=7809 | ||
|TSSclassifier=strong | |||
|UniProt=P08138 | |UniProt=P08138 | ||
|association_with_transcript=0bp_to_ENST00000172229,NM_002507,uc002ioz.3_5end | |association_with_transcript=0bp_to_ENST00000172229,NM_002507,uc002ioz.3_5end | ||
|cluster_id=chr17:47572647..47572662,+ | |||
|coexpression_cluster_id=C397 | |coexpression_cluster_id=C397 | ||
|description=CAGE_peak_1_at_NGFR_5end | |description=CAGE_peak_1_at_NGFR_5end | ||
|id=chr17:47572647..47572662,+ | |id=chr17:47572647..47572662,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000188;4.71e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,4.52e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.05e-08;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.56e-25!115;UBERON:0000924!1.23e-16!173;UBERON:0006601!1.23e-16!173;UBERON:0001017!1.99e-16!82;UBERON:0000073!3.98e-16!94;UBERON:0001016!3.98e-16!94;UBERON:0005743!4.55e-15!86;UBERON:0004121!4.70e-15!169;UBERON:0001049!7.87e-14!57;UBERON:0005068!7.87e-14!57;UBERON:0006241!7.87e-14!57;UBERON:0007135!7.87e-14!57;UBERON:0000955!5.63e-13!69;UBERON:0006238!5.63e-13!69;UBERON:0002346!2.71e-12!90;UBERON:0002616!5.05e-12!59;UBERON:0000153!7.04e-12!129;UBERON:0007811!7.04e-12!129;UBERON:0000033!2.76e-11!123;UBERON:0003075!1.16e-10!86;UBERON:0007284!1.16e-10!86;UBERON:0000475!1.35e-09!365;UBERON:0000468!1.37e-08!659;UBERON:0000922!3.43e-08!612;UBERON:0003080!5.46e-08!42;UBERON:0003076!5.63e-08!15;UBERON:0003057!5.63e-08!15;UBERON:0002780!1.11e-07!41;UBERON:0001890!1.11e-07!41;UBERON:0006240!1.11e-07!41;UBERON:0000062!3.78e-07!511;UBERON:0004732!6.35e-07!13 | |ontology_enrichment_uberon=UBERON:0007023!2.56e-25!115;UBERON:0000924!1.23e-16!173;UBERON:0006601!1.23e-16!173;UBERON:0001017!1.99e-16!82;UBERON:0000073!3.98e-16!94;UBERON:0001016!3.98e-16!94;UBERON:0005743!4.55e-15!86;UBERON:0004121!4.70e-15!169;UBERON:0001049!7.87e-14!57;UBERON:0005068!7.87e-14!57;UBERON:0006241!7.87e-14!57;UBERON:0007135!7.87e-14!57;UBERON:0000955!5.63e-13!69;UBERON:0006238!5.63e-13!69;UBERON:0002346!2.71e-12!90;UBERON:0002616!5.05e-12!59;UBERON:0000153!7.04e-12!129;UBERON:0007811!7.04e-12!129;UBERON:0000033!2.76e-11!123;UBERON:0003075!1.16e-10!86;UBERON:0007284!1.16e-10!86;UBERON:0000475!1.35e-09!365;UBERON:0000468!1.37e-08!659;UBERON:0000922!3.43e-08!612;UBERON:0003080!5.46e-08!42;UBERON:0003076!5.63e-08!15;UBERON:0003057!5.63e-08!15;UBERON:0002780!1.11e-07!41;UBERON:0001890!1.11e-07!41;UBERON:0006240!1.11e-07!41;UBERON:0000062!3.78e-07!511;UBERON:0004732!6.35e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;7.38e-13;49!UBERON:0007023;4.25e-08;114!UBERON:0004732;5.73e-08;13!UBERON:0004733;2.60e-07;12!UBERON:0002028;2.60e-07;12!UBERON:0000073;4.27e-07;53!UBERON:0002616;4.27e-07;53!UBERON:0001134;5.43e-07;16!UBERON:0002036;5.43e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.49e-28,114;UBERON:0011216,2.25e-17,223;UBERON:0004121,1.40e-16,171;UBERON:0000924,1.40e-16,171;UBERON:0006601,1.40e-16,171;UBERON:0001016,6.03e-16,89;UBERON:0001017,3.03e-15,81;UBERON:0001049,2.63e-13,56;UBERON:0005068,2.63e-13,56;UBERON:0006241,2.63e-13,56;UBERON:0007135,2.63e-13,56;UBERON:0002346,5.24e-13,86;UBERON:0010371,1.26e-12,104;UBERON:0000073,1.07e-11,53;UBERON:0002616,1.07e-11,53;UBERON:0000955,2.21e-11,68;UBERON:0006238,2.21e-11,68;UBERON:0003075,4.04e-11,82;UBERON:0007284,4.04e-11,82;UBERON:0003076,3.09e-09,15;UBERON:0003057,3.09e-09,15;UBERON:0000922,3.35e-08,592;UBERON:0010314,5.56e-08,132;UBERON:0004732,5.58e-08,13;UBERON:0004733,2.54e-07,12;UBERON:0002028,2.54e-07,12;UBERON:0007277,2.54e-07,12;UBERON:0002780,7.70e-07,41;UBERON:0001890,7.70e-07,41;UBERON:0003080,7.70e-07,41;UBERON:0006240,7.70e-07,41 | |||
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|phase1_expression=17.622802789244,3.42560838225573,15.7868932587488,26.0190575718139,20.5602103436552,20.9361245784089,0,1.89515962028049,3.91778442299758,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,13.6664374465235,2.85600967741954,20.0611021745976,0.286235987131057,0.821246550437305,0.502170558379211,0.0764134057479513,0,0,0,0.767658796194425,0.154816123316076,2.75826367343678,1.50602959389125,9.61360426433648,0.154934401160603,0,0.587200878669695,0.553995408531877,0,0.217010870715852,0,0,0,0.290796477559129,0,0.242584061187816,0,0.411167888021826,0.929119112685311,1.1507695692886,0.768482119587302,0.47296445977717,0,0,0,0.752969358170419,1.09162460023138,0.449446968890169,1.53041946185451,0.641858054152187,0.639337125799041,0,0.199463657621632,1.27867425159808,0.580418477257168,0.56738522469114,2.4912889959823,1.00499466102697,0,0.434377689410233,3.02699751316684,0.736555271975129,1.26584954976354,0.633765858935825,0.212604299965044,0.628975936525128,0,0,0.16072558669708,0,0,0.730656615058536,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,1.32171328579026,0.560508562981536,2.89722493252585,0.196709770113833,1.57204305099666,0.411202997999018,0.167186495390678,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0.164437904603676,0,0,0.14828656316206,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.76791966692651,0,0.236777252044017,0,1.61285394579786,1.06976078313403,0.579297615531196,0,4.69490601792545,2.68511379871414,0,0,0.144846518960824,0.795285947051099,0,0.283604451492204,0,0,8.2516817563559,74.3162388116786,9.64039551239516,0,0,0,1.19245312152671,1.14398982156026,0.371457501329565,0,0,0,0.56530794192401,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66922267785295,0,0,0,0.286836620748814,0.354668382198357,0.560677600142307,2.1349799145941,3.94668077467456,1.8672662123986,0.67355336034844,0.490385709340376,8.32465852047123,18.43762958336,0.70296429550139,0,0,0,0,0.809364721840658,0.842704840213491,0.204154171254893,0.982674538494144,0.929932030581889,0,0,0,0,0.673344455816265,2.12701483782339,0,0,0.612975591598039,0,1.13432183160021,43.4122918367046,5.97960688691989,0.211931901159562,0,0.309157587715317,0,0.18611685633159,24.8101208394661,16.7591648877262,0,0,0.484938170456436,31.2408441414621,26.3970497356418,0,2.70565194428616,2.45471508531751,16.9214711279512,10.7336861394044,8.87949447753951,18.0100611447753,32.4459102198109,16.9054970086671,2.55484151353081,0,5.14592750554308,12.4321429217232,0,0,0.118306800039844,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0.738155454624648,126.217596423101,22.636570623227,39.6923520740963,1.26755034821831,7.86261773342101,57.3066209480962,0,3.19769940212095,0,0.329250856225877,5.62008766288098,3.71957197923034,10.5550827480724,0.977424915930974,0,0,7.65140672835507,0.234817388471643,0,0.462985512576611,0,2.37061319387782,2.57545848628462,0,0,0,0,1.51183915378974,1.13420077793909,19.7924335173295,3.48760726216754,26.4534048623996,14.7798971368783,0.088048434013226,3.52457796419313,1.8735593944205,4.03975786964416,3.6828778689458,179.916548437949,8.20522130470329,47.9002848863575,9.35730183600244,61.870669915847,2.5724378936752,0.336393253036082,21.3620433728307,0.1466765716419,0,67.9547247118577,0,0,0,0,0,0.266422179016099,1.00084595560703,0.542621605391443,0,0,4.26470338491055,0,0,0,0,0,0,0,0,0,12.8373214536647,3.32997005335432,0.821905290201534,5.37182889719687,2.80212859983818,0.591092280605782,1.50939302401662,1.28343036279748,5.59008173289419,10.4111883086097,2.31986643833309,1.84267891867784,1.91381625495949,0.749007023947182,0,0,0.36807447515742,1.50051156317903,0,0,0,0,0,0.902838299183157,0,2.0694614258501,0,0.553107505625109,0.0868836144680828,14.4892856522428,35.0006292287073,0,0.647142602455851,0.74709290462411,0.909382714338778,0,0,0,0.460385919864187,0.561320188866147,0.128139149255701,0,0.321707842287215,2.96836132889982,0.308419387605311,2.66342587969691,0.0821271560138091,0.519254429183621,0.232420756919918,3.98836183652353,2.6065841139427,3.03867263488458,0.114814448164607,1.0925470080403,0,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,21.0203663761353,7.05084879101244,4.7855509953941,0.574265537996172,1.30012049207304,0,75.0164773946866,13.0941324547448,24.867595305633,61.3372747556161,14.7165735469535,18.7071535149355,34.7724639857692,103.544257457156,1.4875642382488,2.88285101047659,1.40373983744043,3.33820676823315,0,0,0,0.308033580176089,0,0,0.18532421910392,0,0.744316738719335,0.316379424718726,0,0,0,0.318203247925937,0,1.43897966066652,0,0.235624804691373,0.202182481573316,0,0,1.95053495635836,0.243713489631284,0,0,0.141405431953713,0,0.551365343546124,0,0,0,6.55894752046633,0,0.92947049429925,0,0,0.0982490410131212,0,0.354761064070598,0.211107635297664,0.329294892959902,0,1.04980416073495,3.56021817084395,12.73574323518,0,20.7116361708914,2.58303223602738,0,3.99087138183008,3.90529780351831,0.507447609232169,0.764637207142375,0,0.238231775457789,0,0.6484733111927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| ||
|short_description=p1@NGFR | |short_description=p1@NGFR | ||
}} | }} |
Latest revision as of 21:07, 15 September 2015
Short description: | p1@NGFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NGFR_5end |
Coexpression cluster: | C397_mesenchymal_Myoblast_rhabdomyosarcoma_Hepatic_Melanocyte_astrocytoma_Skeletal |
Association with transcript: | 0bp_to_ENST00000172229, NM_002507, uc002ioz.3_5end |
EntrezGene: | NGFR |
HGNC: | 7809 |
UniProt: | P08138 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 4.52e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.49e-28 | 114 |
organ system subdivision | 2.25e-17 | 223 |
ectoderm-derived structure | 1.40e-16 | 171 |
ectoderm | 1.40e-16 | 171 |
presumptive ectoderm | 1.40e-16 | 171 |
nervous system | 6.03e-16 | 89 |
central nervous system | 3.03e-15 | 81 |
neural tube | 2.63e-13 | 56 |
neural rod | 2.63e-13 | 56 |
future spinal cord | 2.63e-13 | 56 |
neural keel | 2.63e-13 | 56 |
neurectoderm | 5.24e-13 | 86 |
ecto-epithelium | 1.26e-12 | 104 |
regional part of nervous system | 1.07e-11 | 53 |
regional part of brain | 1.07e-11 | 53 |
brain | 2.21e-11 | 68 |
future brain | 2.21e-11 | 68 |
neural plate | 4.04e-11 | 82 |
presumptive neural plate | 4.04e-11 | 82 |
posterior neural tube | 3.09e-09 | 15 |
chordal neural plate | 3.09e-09 | 15 |
embryo | 3.35e-08 | 592 |
structure with developmental contribution from neural crest | 5.56e-08 | 132 |
segmental subdivision of nervous system | 5.58e-08 | 13 |
segmental subdivision of hindbrain | 2.54e-07 | 12 |
hindbrain | 2.54e-07 | 12 |
presumptive hindbrain | 2.54e-07 | 12 |
regional part of forebrain | 7.70e-07 | 41 |
forebrain | 7.70e-07 | 41 |
anterior neural tube | 7.70e-07 | 41 |
future forebrain | 7.70e-07 | 41 |