FFCP PHASE1:Hg19::chr1:89521768..89521774,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2633 | |EntrezGene=2633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4182 | |HGNC=4182 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-26bp_to_ENST00000468959_5end | |association_with_transcript=-26bp_to_ENST00000468959_5end | ||
|cluster_id=chr1:89521768..89521774,- | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_5_at_GBP1_5end | |description=CAGE_peak_5_at_GBP1_5end | ||
|id=chr1:89521768..89521774,- | |id=chr1:89521768..89521774,- | ||
|ontology_enrichment_celltype=CL:0002057!4.50e-14!42;CL:0000860!1.06e-13!45;CL:0002194!1.17e-10!63;CL:0000576!1.17e-10!63;CL:0000040!1.17e-10!63;CL:0000559!1.17e-10!63;CL:0002009!2.59e-10!65;CL:0000557!4.69e-08!71;CL:0000766!4.79e-08!76;CL:0000839!5.82e-08!70 | |ontology_enrichment_celltype=CL:0002057!4.50e-14!42;CL:0000860!1.06e-13!45;CL:0002194!1.17e-10!63;CL:0000576!1.17e-10!63;CL:0000040!1.17e-10!63;CL:0000559!1.17e-10!63;CL:0002009!2.59e-10!65;CL:0000557!4.69e-08!71;CL:0000766!4.79e-08!76;CL:0000839!5.82e-08!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.60e-30;33!CL:0002057;1.60e-30;33!CL:0000473;1.82e-23;39!CL:0000234;1.82e-23;39!CL:0000576;4.04e-13;48!CL:0000766;3.24e-08;69!CL:0000135;1.65e-07;3!CL:0000388;1.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.79e-25,42;CL:0002057,1.79e-25,42;CL:0000473,1.18e-23,48;CL:0000234,1.18e-23,48;CL:0002194,1.43e-17,59;CL:0000576,1.43e-17,59;CL:0000040,1.43e-17,59;CL:0000559,1.43e-17,59;CL:0002009,8.60e-17,61;CL:0000766,3.55e-16,72;CL:0000839,4.74e-15,66;CL:0000557,9.83e-15,67;CL:0000763,1.29e-08,108;CL:0000049,1.29e-08,108;CL:0000135,8.46e-08,3;CL:0000388,8.46e-08,3;CL:0002087,7.19e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;9.08e-20;42 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.29e-09!167;UBERON:0004765!2.10e-07!101;UBERON:0001434!2.10e-07!101;UBERON:0001474!2.78e-07!86;UBERON:0002390!3.55e-07!102;UBERON:0003061!3.55e-07!102;UBERON:0002371!4.83e-07!80 | |ontology_enrichment_uberon=UBERON:0002204!3.29e-09!167;UBERON:0004765!2.10e-07!101;UBERON:0001434!2.10e-07!101;UBERON:0001474!2.78e-07!86;UBERON:0002390!3.55e-07!102;UBERON:0003061!3.55e-07!102;UBERON:0002371!4.83e-07!80 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.65e-07;3!UBERON:0000043;1.65e-07;3!UBERON:0007845;1.65e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.61e-13,90;UBERON:0002371,2.00e-13,76;UBERON:0001474,4.33e-13,82;UBERON:0001434,1.33e-12,100;UBERON:0002390,5.13e-12,98;UBERON:0003061,5.13e-12,98;UBERON:0002204,1.11e-11,167;UBERON:0002193,3.10e-11,108;UBERON:0002405,7.50e-11,93;UBERON:0007846,8.46e-08,3;UBERON:0000043,8.46e-08,3;UBERON:0007845,8.46e-08,3 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0,0,0,0,0,0,0,1.34465029290355,1.20538905604795,0.730310090387373,0,0,0,0,0.286235987131057,0,0.502170558379211,0.229240217243854,0.328402357799783,0.157421562627358,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0.434021741431704,0,0,0,0.436194716338694,0,0,1.16214518452842,0,0.619412741790207,72.2107904728598,34.3255346748995,45.8775525983855,2.06847408441971,1.93645405075148,2.70852973188684,1.31769637679823,0.272906150057846,0.898893937780338,7.03992952453076,0.320929027076094,5.75403413219137,26.3881040149373,24.1351025722175,28.1308335351578,26.6992499538297,6.24123747160254,3.11411124497787,47.2347490682677,43.2830822288767,21.9360733152168,19.9781835869012,4.05105399586321,9.49387162322653,0.633765858935825,0.425208599930087,0.838634582033504,0.112328631146495,0.150176892841506,0.16072558669708,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0.32592226663359,0.473447805734733,0,0.668462741311041,0.294605907474837,0,2.70803863765016,1.15282187753108,1.69077151827842,1.64437904603676,1.10540007114339,0,0.741432815810302,0.267540828089713,0,0.339928028092699,0.766440987203842,0.68725489096526,1.26509846009751,0,0,0,0.150575119077773,0.255973222308837,0,0.473554504088034,0,0.604820229674197,0.267440195783507,0.144824403882799,0,0,0.12786256184353,0,0,0.144846518960824,0,0.973269740605272,0.567208902984407,0.886917589850256,0.43917392846563,0,0,0.370784442784429,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,0,0,0,0.402829317109147,0,0.732186172644509,0.735326160691737,0,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.886413581652058,0.132409180813219,0.860509862246441,0,1.12135520028461,0,0.24666754841716,0,0.404132016209064,0.163461903113459,0,0,0,0.312160076830321,0,0,0.23486899728753,0,0,0,0.122834317311768,0,1.18800285728205,0.989067717114227,0,0,0.168336113954066,0,0,0.438977620880838,0.612975591598039,0.150238058906597,0.226864366320042,0.717558542755448,0.85422955527427,0.635795703478686,0.300091096084402,0.206105058476878,0.772921620136887,0.37223371266318,0,0.194874010322397,0.252433774244115,0.368199594569197,0.484938170456436,0.355009592516614,0.201504196455281,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,1.56449532329816,6.43240938192885,0,2.78620756819187,0.721879481669586,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,1.18157981336281,0,0,0.171567810298526,0.109750285408626,0,0.201057944823262,0.185176890317059,0,0,1.44331342025273,0.115930404975077,0.234817388471643,0.721832238805369,0,1.52203321787679,0,0,0.246217006087397,0.702012795417713,0.148631162288728,0,1.34385702559088,0.425325291727159,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.690605505112,0.531876233169741,0,0,0,0,0.714889968290738,0.542621605391443,0,0,0.710783897485092,0,0.602878754119172,0,2.49932477955143,0,0,2.10833939483032,0.479249710983165,0,1.42636905040718,0,0.410952645100767,0.179060963239896,0.112085143993527,0,0.431255149719035,0.385029108839245,0,0,0,0,0.637938751653163,2.24702107184155,2.99161459204025,0.414415513436035,0.24538298343828,1.00034104211935,0.271265023699736,1.45579603071565,5.17444067511769,1.10391690523754,0.468565659970853,0,0,0,0,0,0.521301686808497,0,0,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0.841980283299221,0.128139149255701,0.511707249066704,0.64341568457443,0,0.771048469013278,0.532685175939381,0.492762936082855,2.07701771673448,0.813472649219715,0,0.802025881213139,0.184161977871793,0.459257792658427,1.45672934405374,1.04899531967539,0,0.15403067420883,0,0,0.105551628892876,0,0,1.51141141271498,0,0,0,0,0,0,0,0,0,0,0,0,0.915694648183434,0.165018999841176,0,0.650060246036521,0,0.096670718292122,0.616194468458578,0.460511024178389,0.275673144969061,0.537101224341368,0.725083469571143,0.255679882248303,0.801288320820636,0,0,0,0.10115778085555,0,0.31481234683064,0,0.924100740528266,0,0,0,0.286249773483982,0.372158369359667,0.316379424718726,0.762520775695299,0,2.99557291623744,0,0,0.359744915166629,0,0.471249609382746,0.202182481573316,0,0.421258456238981,0,6.82397770967596,0,0.682499557039929,1.1312434556297,0,0,1.32687795048244,0.876901770507525,0,0,0,0.30982349809975,0,0.143411352204052,0.392996164052485,0,0.354761064070598,0.422215270595328,3.29294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,1.13929437434833,0.238231775457789,0,0.648473311192717,0,1.58625035258854,0,0,0.490080431962063,0.185803175125719,0,0,0.797131363644112,0.59873811429845,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.222617410045812,0.16480387422676,0,0.19924798825107,0.552567831062295,0,0.102268682502155,0,0,0.269605053441981,0,0,0.0986434056369336,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.868124974666461,0,0.4823857545016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| ||
|short_description=p5@GBP1 | |short_description=p5@GBP1 | ||
}} | }} |
Latest revision as of 16:26, 19 September 2015
Short description: | p5@GBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GBP1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -26bp_to_ENST00000468959_5end |
EntrezGene: | GBP1 |
HGNC: | 4182 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.79e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-25 | 42 |
defensive cell | 1.18e-23 | 48 |
phagocyte | 1.18e-23 | 48 |
monopoietic cell | 1.43e-17 | 59 |
monocyte | 1.43e-17 | 59 |
monoblast | 1.43e-17 | 59 |
promonocyte | 1.43e-17 | 59 |
macrophage dendritic cell progenitor | 8.60e-17 | 61 |
myeloid leukocyte | 3.55e-16 | 72 |
myeloid lineage restricted progenitor cell | 4.74e-15 | 66 |
granulocyte monocyte progenitor cell | 9.83e-15 | 67 |
myeloid cell | 1.29e-08 | 108 |
common myeloid progenitor | 1.29e-08 | 108 |
fibrocyte | 8.46e-08 | 3 |
tendon cell | 8.46e-08 | 3 |
nongranular leukocyte | 7.19e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.61e-13 | 90 |
bone marrow | 2.00e-13 | 76 |
bone element | 4.33e-13 | 82 |
skeletal system | 1.33e-12 | 100 |
hematopoietic system | 5.13e-12 | 98 |
blood island | 5.13e-12 | 98 |
musculoskeletal system | 1.11e-11 | 167 |
hemolymphoid system | 3.10e-11 | 108 |
immune system | 7.50e-11 | 93 |
dense regular connective tissue | 8.46e-08 | 3 |
tendon | 8.46e-08 | 3 |
regular connective tissue | 8.46e-08 | 3 |